EWM23874.1, cds6809 (CDS) Nannochloropsis gaditana

Overview
NameEWM23874.1
Unique Namecds6809
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:589492..589624 -
Alignment locationCM002469.1:589101..589280 -
Alignment locationCM002469.1:588022..588881 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23874.1
ProductAdaptin ear-binding coat-associated protein 1 NECAP-1
Orig transcript idgnl|cribi|Naga_100202g4.199.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:589492..589624 -
CM002469.1supercontigCM002469.1:589101..589280 -
CM002469.1supercontigCM002469.1:588022..588881 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006897endocytosis
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR011993PH-like_dom
IPR012466NECAP-1
Homology
BLAST of EWM23874.1 vs. NCBI_GenBank
Match: gi|585105150|gb|EWM23874.1| (Adaptin ear-binding coat-associated protein 1 NECAP-1 [Nannochloropsis gaditana])

HSP 1 Score: 783.482 bits (2022), Expect = 0.000e+0
Identity = 390/390 (100.00%), Postives = 390/390 (100.00%), Query Frame = 0
Query:    1 MRIFFFNKLPLYDRSPQENLGGRDAAKYSPSTVKILHAMASHAEEDAVERTLCQIRSVHVFKIPPRTSAGGYRASDWKDEVWQGAVKIVQKGLDAAIVLTDPKTGSLFAMSPIKEGSVERCVDSSRYFVLKVQNAAGKHAFIGVAFDEREQAFDFNVAIQEYEKDKEREERLRTGVGAGGVDSMGAGIPKRDLSLKEGEKISIKLPTRQGGERRPRGIGKESSGNGVLPPPPGSCRGGGGLLAPPPSTGSGGGKVYGGAAAHDDFFRGTGSLAAGPPPRKEDGTESSGPLPSVSAHRSPATPAPSGFPDDFGGFVAPSNPPSSSPSPAATRFPTAFPIPRAPVSGHGAGKSCPFDGLSALGDDLASQSAPWGAKSNTSNSDPFADLLPFK 390
            MRIFFFNKLPLYDRSPQENLGGRDAAKYSPSTVKILHAMASHAEEDAVERTLCQIRSVHVFKIPPRTSAGGYRASDWKDEVWQGAVKIVQKGLDAAIVLTDPKTGSLFAMSPIKEGSVERCVDSSRYFVLKVQNAAGKHAFIGVAFDEREQAFDFNVAIQEYEKDKEREERLRTGVGAGGVDSMGAGIPKRDLSLKEGEKISIKLPTRQGGERRPRGIGKESSGNGVLPPPPGSCRGGGGLLAPPPSTGSGGGKVYGGAAAHDDFFRGTGSLAAGPPPRKEDGTESSGPLPSVSAHRSPATPAPSGFPDDFGGFVAPSNPPSSSPSPAATRFPTAFPIPRAPVSGHGAGKSCPFDGLSALGDDLASQSAPWGAKSNTSNSDPFADLLPFK
Sbjct:    1 MRIFFFNKLPLYDRSPQENLGGRDAAKYSPSTVKILHAMASHAEEDAVERTLCQIRSVHVFKIPPRTSAGGYRASDWKDEVWQGAVKIVQKGLDAAIVLTDPKTGSLFAMSPIKEGSVERCVDSSRYFVLKVQNAAGKHAFIGVAFDEREQAFDFNVAIQEYEKDKEREERLRTGVGAGGVDSMGAGIPKRDLSLKEGEKISIKLPTRQGGERRPRGIGKESSGNGVLPPPPGSCRGGGGLLAPPPSTGSGGGKVYGGAAAHDDFFRGTGSLAAGPPPRKEDGTESSGPLPSVSAHRSPATPAPSGFPDDFGGFVAPSNPPSSSPSPAATRFPTAFPIPRAPVSGHGAGKSCPFDGLSALGDDLASQSAPWGAKSNTSNSDPFADLLPFK 390          
BLAST of EWM23874.1 vs. NCBI_GenBank
Match: gi|553183333|ref|XP_005853878.1| (hypothetical protein NGA_0437400 [Nannochloropsis gaditana CCMP526] >gi|422295186|gb|EKU22485.1| hypothetical protein NGA_0437400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 235.343 bits (599), Expect = 1.035e-73
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0
Query:   39 MASHAEEDAVERTLCQIRSVHVFKIPPRTSAGGYRASDWKDEVWQGAVKIVQKGLDAAIVLTDPKTGSLFAMSPIKEGSVERCVDSSRYFVLKVQNAAGKHAFIGVAFDER 149
            MASHAEEDAVERTLCQIRSVHVFKIPPRTSAGGYRASDWKDEVWQGAVKIVQKGLDAAIVLTDPKTGSLFAMSPIKEGSVERCVDSSRYFVLKVQNAAGKHAFIGVAFDER
Sbjct:    1 MASHAEEDAVERTLCQIRSVHVFKIPPRTSAGGYRASDWKDEVWQGAVKIVQKGLDAAIVLTDPKTGSLFAMSPIKEGSVERCVDSSRYFVLKVQNAAGKHAFIGVAFDER 111          
BLAST of EWM23874.1 vs. NCBI_GenBank
Match: gi|219112201|ref|XP_002177852.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410737|gb|EEC50666.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 175.637 bits (444), Expect = 2.891e-50
Identity = 80/160 (50.00%), Postives = 113/160 (70.62%), Query Frame = 0
Query:   46 DAVERTLCQIRSVHVFKIPPRTSAGGYRASDWKDEVWQGAVKIVQKGLDAAIVLTDPKTGSLFAMSPIKEGSVERCVDSSRYFVLKVQNAAGKHAFIGVAFDEREQAFDFNVAIQEYEKDKEREERLRTGVGAGGVDSMGAGIPKRDLSLKEGEKISIKL 205
            + +ER  C I   HVFK+PPR +AGG+R +DW  EVWQG +K+V++G    I+LTD  T ++FA+ P+KEG+V+RCVDSSRYFVL+V+NAAG+H FIG+AF+ER  AFDFN ++++  ++KE E     G  +G         P +D S+K+GEKI I +
Sbjct:    4 EVIERVRCVIPDAHVFKLPPRQTAGGWRGADWDQEVWQGTLKVVERGALTVILLTDKTTHAIFAVCPVKEGAVDRCVDSSRYFVLRVENAAGRHMFIGLAFNERNDAFDFNTSLEDSRREKEAEANPEEGTDSG---------PPKDYSMKDGEKIHISV 154          
BLAST of EWM23874.1 vs. NCBI_GenBank
Match: gi|299116365|emb|CBN74630.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 178.718 bits (452), Expect = 1.211e-49
Identity = 106/261 (40.61%), Postives = 147/261 (56.32%), Query Frame = 0
Query:   39 MASHAEEDAVERTLCQIRSVHVFKIPPRTSAGGYRASDWKDEVWQGAVKIVQKGLDAAIVLTDPKTGSLFAMSPIKEGSVERCVDSSRYFVLKVQNAAGKHAFIGVAFDEREQAFDFNVAIQEYEKDKEREERLR-----TGVGAGGVDSMGAGIPKRDLSLKEGEKISIKLPTRQGGERRPRGIG--------KESSGNGVLPPP---PGSCRGGGGLLAPPPSTGSGGGKVYGGAAAHDDFFRGTGSLAAGPPPRKEDG 283
            MA  AE++ VE TL QI+  ++F++PPR  A G+ A+D   ++W G +++VQ+G +AAI+L D + G LFAM  + +G+VER  DSSRYFV+K+QNA G+HAF+G+AFD+R QAFDFNVA+QE++KD ER  +L+      G   G      A  PK DLSLK+GEKI I +    GG     G G          SSG   L       G  R    L +    +  G    +    ++  FF G G+    P  +K  G
Sbjct:    1 MAGLAEDEIVEHTLTQIQECYLFELPPRVRAQGWLAADMTKQMWTGRMRVVQRGQEAAIMLVDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDIERSTKLKEDGQGGGDSGGDGGKAAAATPKVDLSLKQGEKIKISI----GGGSSKVGAGGVGMMEVVTSSSGGVALCAACALSGGYRTAAALCSREECSSCGRHNTHAHVLSYIPFFWGGGAREINPRVKKNVG 257          
BLAST of EWM23874.1 vs. NCBI_GenBank
Match: gi|1210525688|dbj|GAX15551.1| (hypothetical protein FisN_6Hh151 [Fistulifera solaris])

HSP 1 Score: 174.866 bits (442), Expect = 2.841e-49
Identity = 81/167 (48.50%), Postives = 115/167 (68.86%), Query Frame = 0
Query:   39 MASHAEEDAVERTLCQIRSVHVFKIPPRTSAGGYRASDWKDEVWQGAVKIVQKGLDAAIVLTDPKTGSLFAMSPIKEGSVERCVDSSRYFVLKVQNAAGKHAFIGVAFDEREQAFDFNVAIQEYEKDKEREERLRTGVGAGGVDSMGAGIPKRDLSLKEGEKISIKL 205
            + S  + + +ER  C I   H+FK+PPR +AGG+R +DW  EVWQG +K+V++G    I+L DPK  S+FA+ P+ +G+V+RCVDSSRYFVLKV+NA GKH F+G+AF+ER  AFDFN A+++  ++KE E+ +           +  G PK D S+KEGEKI I +
Sbjct:   18 LESLKDLEVIERVRCTIPDAHIFKLPPRPTAGGWRGADWDKEVWQGTLKVVERGDLTVILLVDPKKNSIFAVCPVSDGAVDRCVDSSRYFVLKVENADGKHLFVGMAFNERNDAFDFNTALEDARREKEVEQNMA---------KLDIGEPK-DYSIKEGEKIHISV 174          
BLAST of EWM23874.1 vs. NCBI_GenBank
Match: gi|1210532042|dbj|GAX09470.1| (hypothetical protein FisN_6Lh151 [Fistulifera solaris])

HSP 1 Score: 169.474 bits (428), Expect = 2.610e-47
Identity = 79/167 (47.31%), Postives = 114/167 (68.26%), Query Frame = 0
Query:   39 MASHAEEDAVERTLCQIRSVHVFKIPPRTSAGGYRASDWKDEVWQGAVKIVQKGLDAAIVLTDPKTGSLFAMSPIKEGSVERCVDSSRYFVLKVQNAAGKHAFIGVAFDEREQAFDFNVAIQEYEKDKEREERLRTGVGAGGVDSMGAGIPKRDLSLKEGEKISIKL 205
            + S  + + +ER  C I   H+FK+PPR +AGG+R +DW  EVWQG +K+V++G    I+L D K  S+FA+ P+ +G+V+RCVDSSRYFVLKV++A GKH F+G+AF+ER  AFDFN A+++  ++KE E+ +           +  G PK D S+KEGEKI I +
Sbjct:   18 LESLKDLEVIERVRCTIPDAHIFKLPPRPTAGGWRGADWDKEVWQGTLKVVERGDLTVILLLDSKNNSIFAVCPVSDGAVDRCVDSSRYFVLKVESADGKHLFVGMAFNERNDAFDFNTALEDARREKEVEQNMA---------KLDIGEPK-DYSIKEGEKIHISV 174          
BLAST of EWM23874.1 vs. NCBI_GenBank
Match: gi|1072227648|gb|OEU12387.1| (DUF1681-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 170.244 bits (430), Expect = 4.707e-47
Identity = 75/172 (43.60%), Postives = 115/172 (66.86%), Query Frame = 0
Query:   39 MASHAEEDAVERTLCQIRSVHVFKIPPRTSAGGYRASDWKDEVWQGAVKIVQKGLDAAIVLTDPKTGSLFAMSPIKEGSVERCVDSSRYFVLKVQNAAGKHAFIGVAFDEREQAFDFNVAIQEYEKDKEREERLRTGVGAGGVDSMGAGIPKRDLSLKEGEKISIKLPTRQG 210
            M S   +D +ER  C I+  HVFK+PPR ++GG+R +DW+DEVWQG VK+V++     ++L D  +G +FA+ PIK+G+V+RCVDSSRYFVLK++N  G+H F+GVAF+ER  +FDFN ++++ ++                + +    +P++D S+KEGEKI +K+    G
Sbjct:   42 MKSLQNKDVIERVRCVIKDAHVFKLPPRPTSGGWRGADWRDEVWQGTVKVVERDEMTLVLLVDKVSGDVFAVCPIKDGAVDRCVDSSRYFVLKIENDNGRHMFVGVAFNERNDSFDFNTSLEDAKR--------ERAAAKAPIQNKIPNLPEKDYSIKEGEKIHVKIKNISG 205          
BLAST of EWM23874.1 vs. NCBI_GenBank
Match: gi|1179510280|ref|XP_020677804.1| (uncharacterized protein At1g03900 [Dendrobium catenatum] >gi|1179510283|ref|XP_020677805.1| uncharacterized protein At1g03900 [Dendrobium catenatum])

HSP 1 Score: 160.999 bits (406), Expect = 3.453e-43
Identity = 108/289 (37.37%), Postives = 151/289 (52.25%), Query Frame = 0
Query:   41 SHAEEDAVERTLCQIRSVHVFKIPPRTSAGGYRASDW--KDEVWQGAVKIVQKGLDAAIVLTDPKTGSLFAMSPI----KEGSVERCVDSSRYFVLKVQNAAGKHAFIGVAFDEREQAFDFNVAIQEYEKDKEREERLRTGVGAGGVDSMGAGIPKRDLSLKEGEKISIKLPTRQGGERRPRGIGKESSGNGVLPP-----PPGSCRGGGGLLAPPPSTGSGGGKVYG------GAAAHDDFFRGTGSLAAGPPPRK-----EDGTESSGPLPSVSAHRSPATPAPSGF 307
            S  EE+A E TL  +R V VFKIPPR+++GGY+  +W   D++W G +++V  G    I L DP +G LFA   +    +E SVE  +DSSRYFVLK+++  GKHAFIG+ F+ER +AFDFNVA+ ++EK   RE   +   G  G +S     P  +  LKEGE I I + +            K SSG G+L          + +  G LLAPPP   SGGGK+           A      G+ +L A    R+      D ++    LPS ++   P +   SG+
Sbjct:    2 SSIEEEAFEHTLLVVREVSVFKIPPRSTSGGYKCGEWLQSDKIWSGRLRVVSCGDRCEIRLEDPSSGELFAACFVLPGHRESSVETVLDSSRYFVLKIEDGRGKHAFIGLGFNERNEAFDFNVALSDHEKYLRREHE-KESDGVEGDESSIDIHPAVNHRLKEGETIRINVKS------------KPSSGTGMLSAAGMSGAASNTKKPGALLAPPP---SGGGKMRSPLPPPPNDPAVTKMHSGSSALMANESTRRSADPLSDLSQLERSLPSTNSTVHPTSTTSSGW 274          
BLAST of EWM23874.1 vs. NCBI_GenBank
Match: gi|1175850817|ref|XP_020578978.1| (uncharacterized protein At1g03900 [Phalaenopsis equestris])

HSP 1 Score: 159.073 bits (401), Expect = 1.732e-42
Identity = 106/271 (39.11%), Postives = 144/271 (53.14%), Query Frame = 0
Query:   41 SHAEEDAVERTLCQIRSVHVFKIPPRTSAGGYRASDW--KDEVWQGAVKIVQKGLDAAIVLTDPKTGSLFAMSPI----KEGSVERCVDSSRYFVLKVQNAAGKHAFIGVAFDEREQAFDFNVAIQEYEKDKEREERLRTGVGAGGVDSMGAGIPKRDLSLKEGEKISIKLPTRQGGERRPRGIGKESSGNGVLPPP-----PGSCRGGGGLLAPPPSTGSGGGKVYG------GAAAHDDFFRGTGSLAAGPPPRKEDGTESSGPLPSVS 294
            S  EE+A E TL  +R V VFKIPPR+++GGY+  +W   D++W G +++V  G    I L DP TG LFA   +    +E SVE  +DSSRYFVL++++  GKHAFIG+ F+ER +AFDFNVA+ ++EK  +RE   +   G  G +S     P  +  LKEGE I I + +            K SSG G+L          S +  G LL PPP   SGG K+           A      G+G+L A      E  T S+ PL  +S
Sbjct:    2 SSIEEEAFEHTLLVVREVSVFKIPPRSTSGGYKCGEWLQSDKIWSGRLRVVSCGDRCEIRLEDPSTGELFAACFVLPGQREISVETVLDSSRYFVLRIEDGRGKHAFIGLGFNERNEAFDFNVALSDHEKYSKREHE-KESDGVEGDESSIDIHPAVNHRLKEGETIRINVKS------------KPSSGTGMLSAAGMSGGASSTKKSGALLVPPP---SGGAKLRSPLPPPPNDPAVSRMHSGSGALVA-----NESTTSSADPLSDLS 251          
BLAST of EWM23874.1 vs. NCBI_GenBank
Match: gi|661892599|emb|CDP03757.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 157.532 bits (397), Expect = 8.368e-42
Identity = 93/225 (41.33%), Postives = 126/225 (56.00%), Query Frame = 0
Query:   39 MASHAEEDAVERTLCQIRSVHVFKIPPRTSAGGYRASDW--KDEVWQGAVKIVQKGLDAAIVLTDPKTGSLFAMSPI----KEGSVERCVDSSRYFVLKVQNAAGKHAFIGVAFDEREQAFDFNVAIQEYEKDKEREERLRTG--VGAGGVDSMGAGIPKRDLSLKEGEKISIKLPTRQGGERRPRGIGKESSGNGVLPPP------PGSCRGGGGLLAPPPSTG 249
            M+   +E++ E TL  +R V V+KIPPR+++GGY+  +W   D++W G +++V       I L DP +G LFA   I    +E SVE  +DSSRYFVLK+++  GKHAFIG+ F+ER +AFDFNVA+ ++EK   RE    TG   G G  DS     P  +  LKEGE I I +              K SSG G+L         PG+ +     LAPPPS G
Sbjct:    1 MSFEDDEESFEHTLLVVREVSVYKIPPRSTSGGYKCGEWLQSDKIWSGRLRVVSCNTRCEIRLEDPNSGELFAACFINPGQRENSVEPALDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRREHEKETGGAAGEGSDDSHIDIHPAVNHRLKEGETIRINVKN------------KPSSGTGMLSAAGMSSGHPGTVKAKTLSLAPPPSGG 213          
The following BLAST results are available for this feature:
BLAST of EWM23874.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105150|gb|EWM23874.1|0.000e+0100.00Adaptin ear-binding coat-associated protein 1 NECA... [more]
gi|553183333|ref|XP_005853878.1|1.035e-73100.00hypothetical protein NGA_0437400 [Nannochloropsis ... [more]
gi|219112201|ref|XP_002177852.1|2.891e-5050.00predicted protein, partial [Phaeodactylum tricornu... [more]
gi|299116365|emb|CBN74630.1|1.211e-4940.61conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210525688|dbj|GAX15551.1|2.841e-4948.50hypothetical protein FisN_6Hh151 [Fistulifera sola... [more]
gi|1210532042|dbj|GAX09470.1|2.610e-4747.31hypothetical protein FisN_6Lh151 [Fistulifera sola... [more]
gi|1072227648|gb|OEU12387.1|4.707e-4743.60DUF1681-domain-containing protein [Fragilariopsis ... [more]
gi|1179510280|ref|XP_020677804.1|3.453e-4337.37uncharacterized protein At1g03900 [Dendrobium cate... [more]
gi|1175850817|ref|XP_020578978.1|1.732e-4239.11uncharacterized protein At1g03900 [Phalaenopsis eq... [more]
gi|661892599|emb|CDP03757.1|8.368e-4241.33unnamed protein product [Coffea canephora][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6825rna6825Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications