rna6825, rna6825 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6825
Unique Name	rna6825
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1064
Alignment location	CM002469.1:587680..589735 -

Link to JBrowse

Properties


Property Name	Value
Product	Adaptin ear-binding coat-associated protein 1 NECAP-1
Orig transcript id	gnl\|cribi\|Naga_100202g4.199.mrna
Orig protein id	gnl\|cribi\|Naga_100202g4.199
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:587680..589735 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100202g4	gene6597	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6825	rna6825-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23874.1	cds6809	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:587680..589735-
coding sequence from alignment at CM002469.1:587680..589735-

mRNA sequence

>rna6825 ID=rna6825|Name=rna6825|organism=Nannochloropsis gaditana|type=mRNA|length=1064bp
TGCAGATACTTCTCATGTTAAAAGTCTGCCGTGGTATTCACAATTCATCA
TTCCGGAGAACGTTCCTCCACAAGCTGCGCTACTAGCTTTATTAGGGCTT
GGATGCAAAGCTCAGGCATCCTCTCCGTCCAAAAGAATGGTGAAAAGTTA
GCTGACCACATGAAAGGAGTCGCTGCATTCCAAAACCTGCTGGCCTCAGC
CAGGCATATCGTAATACTAACAGGAGCCGGCATAAGTGCGGAGAGTGGTA
TACCTACATTTCGCGGCGATGGAGGGCTATGGCGGACATACGAGGCGCAA
GAATTGGCGACTCCCGACGCGTTTCGGAAGAACCCTTCACTCGTTTGGGA
ATTTTATCATTACCGTCGCGAAGTGGTAGCAAAGTGCCAGCCCAATGTCG
GACATTTTGCCTTAGCCGCTCTTCAACGGAAATTGACGTTGCAAGGGAAG
CGAATGGATGTCATCACGCAAAACATTGATCGATTGCACCAAGCCGCCGG
GAGCACGGACGTTGTTGAACTTCATGGATCTTTATGGCTTCTCAAGGCGG
TTGACGAACCCGGCTTCGTCGAAGATGGGGTAAAAGTTTGGGAAGACCGG
TCGATGCCTGTGGCGCCCTGCTTCGCCGGGAAATGTCAGCCCGACCCCCA
CATCCGCAGCTCGGACATTCCAACGTCGGCACTCCCGCACACCAGGAACG
AACAGAAGCTATTGAGGCCTGCAGTAGTATGGTTCAACGAAGGGCTGGAC
CCTCGGGTCCTTACGGGCGCCTACGAGCTTTTGAATGCGTGCGACCTTCT
CCTGGTGGTGGGCACCAGCTCCGTCGTCTACCCTGCGGCATCTTTCGCCC
CCTTGGTCGCAGAGGCAGGGAAGCCTGTGGTGGAAGTTAACTTGGACCCG
ACGGATCATTCCAATATTTGCAGGCTGGCATTCCAGGGAAAAGCCGGCGA
AATCTTGCCGGTATTGCTGGGCGTGGAGGAGGAGGTTACCGGATTGGTTC
AGGACTGGGCGGGAAAGACGACAAATACTAGGACCCCTCCAAAGAATTAA
ATAGAAGGGACATA

protein sequence of rna6825

>rna6825-protein ID=rna6825-protein|Name=rna6825|organism=Nannochloropsis gaditana|type=polypeptide|length=390bp
MRIFFFNKLPLYDRSPQENLGGRDAAKYSPSTVKILHAMASHAEEDAVER
TLCQIRSVHVFKIPPRTSAGGYRASDWKDEVWQGAVKIVQKGLDAAIVLT
DPKTGSLFAMSPIKEGSVERCVDSSRYFVLKVQNAAGKHAFIGVAFDERE
QAFDFNVAIQEYEKDKEREERLRTGVGAGGVDSMGAGIPKRDLSLKEGEK
ISIKLPTRQGGERRPRGIGKESSGNGVLPPPPGSCRGGGGLLAPPPSTGS
GGGKVYGGAAAHDDFFRGTGSLAAGPPPRKEDGTESSGPLPSVSAHRSPA
TPAPSGFPDDFGGFVAPSNPPSSSPSPAATRFPTAFPIPRAPVSGHGAGK
SCPFDGLSALGDDLASQSAPWGAKSNTSNSDPFADLLPFK

mRNA from alignment at CM002469.1:587680..589735-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6825 ID=rna6825|Name=rna6825|organism=Nannochloropsis gaditana|type=mRNA|length=2056bp|location=Sequence derived from alignment at CM002469.1:587680..589735- (Nannochloropsis gaditana)
CCTTTGTCCCGATACGACATAAAATCCCACGCCGAGGCACGCATGTTCTT
GTTCTTTCCACTCTCGGGGCAGATGTGTACTTTTTTAAAGCGTGGCCGTT
TCGCTTTGTGAATGCGTATCTTTTTTTTTAACAAGCTTCCTCTCTACGAC
CGATCCCCACAGGAAAACCTGGGAGGGAGGGACGCAGCCAAATACTCTCC
TAGTACAGTCAAAATATTGCACGCCATGGCTTCTCACGCAGAAGGTATGT
GTCTGCGTGTCATTTATCTCTTTATCACCACTCTAGCCTTTCATGACTCT
CGAAAAAAAAATGCTCGCGACAAAATAGAGGCTCCTTGATATCCCCTCGT
GCCCCCTGTGTTCTATCCCCCTAAGGAAAGCTACAGTCCCGGGTACTGTT
CTTGTTTTTTCTACATTCTCACACCGGATGACGTGCTTACCTATCTTGTA
CGCAGAGGACGCCGTCGAGCGCACCCTCTGCCAGATCCGATCAGTGCATG
TGTTCAAGATCCCCCCTCGAACGAGCGCAGGAGGGTACCGAGCCTCTGAC
TGGAAAGACGAGGTGTGGCAAGGTGCTGTTAAGATTGTTCAAAAAGGACT
GGACGCTGCGATCGTTCTAACGGATCCCAAGACTGGTAAGGACACCGTGG
TTTGTCTTTCGTTTCGCTTTTGCCGCTGTCTTATATTCCTCTCGGCCTCC
TGTGTTTCTTAGTCCGTGACTCTTTCATTTTTCTCCTCCACTCCCGTGAT
TTCCATGTTTTTCAAGATGTCGGAAGACGCTCGAAGAATGATGTATTAAG
CGTGCATAATTTTATATTTGATTTTTGCTACCTTTCCCCCCTCGTACGTG
CCAGGCTCTCTCTTTGCCATGTCGCCTATCAAAGAGGGTTCCGTGGAACG
TTGCGTAGATTCGAGCCGTTACTTTGTTCTGAAGGTTCAAAACGCTGCGG
GCAAGCATGCCTTCATCGGTGTCGCCTTCGATGAACGGGAGCAAGCCTTC
GATTTCAACGTGGCGATCCAGGAGTACGAGAAAGACAAAGAGCGGGAAGA
GCGGCTGAGGACAGGCGTGGGCGCGGGCGGAGTGGATTCCATGGGAGCTG
GCATCCCAAAGCGGGACTTAAGCCTGAAGGAGGGCGAAAAAATCTCGATC
AAGCTACCGACACGCCAAGGCGGGGAGCGGAGGCCACGCGGAATCGGGAA
AGAGTCCAGCGGGAACGGAGTGCTACCGCCCCCTCCAGGGTCTTGTCGGG
GGGGAGGAGGGTTGCTGGCACCACCACCCTCGACGGGTTCCGGGGGGGGG
AAAGTGTATGGAGGGGCTGCGGCACATGACGATTTTTTCCGCGGCACGGG
GAGCCTAGCGGCGGGCCCGCCCCCTCGGAAAGAGGACGGCACCGAGTCCT
CCGGGCCGCTGCCATCCGTTTCCGCCCATCGGTCTCCTGCTACGCCCGCG
CCGTCGGGTTTCCCCGATGACTTTGGAGGCTTTGTGGCTCCCAGTAACCC
GCCTTCCTCCTCCCCCTCCCCCGCCGCAACCCGCTTTCCCACCGCCTTTC
CTATTCCTCGCGCCCCGGTCTCGGGCCACGGCGCGGGGAAGTCCTGCCCC
TTCGACGGTCTCAGTGCCCTGGGTGACGACTTGGCCTCTCAATCGGCCCC
GTGGGGCGCCAAGAGTAACACTTCCAACAGCGATCCTTTCGCGGACCTGC
TGCCGTTCAAGTAAGGGAGGGGTTTTCAACCGGCGAGCGGCAAAGAAGAG
AAAGCTAGCGGCAGTACACGACCGCGACATGCCGGAGGCTGGCGGCGGTC
TTGACATCCTGTGTGTCATTAATGTGAATGCTTTGTTTATTTAGGTTATG
GTGCTGTATGTTGTGTTGCCAAGGAAGGCGATGGAATTGAAAAGCTTGGG
AAAAGACCGTGTCTCTCGCGTCACGAGTTAGGGATGAGCGCATGCTGTAC
AAGAATGTGGAAGAACGTAAATACACGACAAAGGTAGCGCTGACATTGTC
TATCATGTGAAATATGTCCCTTCTATTTAATTCTTTGGAGGGGTCCTAGT
ATTTGT

Coding sequence (CDS) from alignment at CM002469.1:587680..589735-

>rna6825 ID=rna6825|Name=rna6825|organism=Nannochloropsis gaditana|type=CDS|length=3519bp|location=Sequence derived from alignment at CM002469.1:587680..589735- (Nannochloropsis gaditana)
GCTCTCTCTTTGCCATGTCGCCTATCAAAGAGGGTTCCGTGGAACGTTGC
GTAGATTCGAGCCGTTACTTTGTTCTGAAGGTTCAAAACGCTGCGGGCAA
GCATGCCTTCATCGGTGTCGCCTTCGATGAACGGGAGCAAGCCTTCGATT
TCAACGTGGCGATCCAGGAGTACGAGAAAGACAAAGAGCGGGAAGAGCGG
CTGAGGACAGGCGTGGGCGCGGGCGGAGTGGATTCCATGGGAGCTGGCAT
CCCAAAGCGGGACTTAAGCCTGAAGGAGGGCGAAAAAATCTCGATCAAGC
TACCGACACGCCAAGGCGGGGAGCGGAGGCCACGCGGAATCGGGAAAGAG
TCCAGCGGGAACGGAGTGCTACCGCCCCCTCCAGGGTCTTGTCGGGGGGG
AGGAGGGTTGCTGGCACCACCACCCTCGACGGGTTCCGGGGGGGGGAAAG
TGTATGGAGGGGCTGCGGCACATGACGATTTTTTCCGCGGCACGGGGAGC
CTAGCGGCGGGCCCGCCCCCTCGGAAAGAGGACGGCACCGAGTCCTCCGG
GCCGCTGCCATCCGTTTCCGCCCATCGGTCTCCTGCTACGCCCGCGCCGT
CGGGTTTCCCCGATGACTTTGGAGGCTTTGTGGCTCCCAGTAACCCGCCT
TCCTCCTCCCCCTCCCCCGCCGCAACCCGCTTTCCCACCGCCTTTCCTAT
TCCTCGCGCCCCGGTCTCGGGCCACGGCGCGGGGAAGTCCTGCCCCTTCG
ACGGTCTCAGTGCCCTGGGTGACGACTTGGCCTCTCAATCGGCCCCGTGG
GGCGCCAAGAGTAACACTTCCAACAGCGATCCTTTCGCGGACCTGCTGCC
GTTCAAGTAAAGGACGCCGTCGAGCGCACCCTCTGCCAGATCCGATCAGT
GCATGTGTTCAAGATCCCCCCTCGAACGAGCGCAGGAGGGTACCGAGCCT
CTGACTGGAAAGACGAGGTGTGGCAAGGTGCTGTTAAGATTGTTCAAAAA
GGACTGGACGCTGCGATCGTTCTAACGGATCCCAAGACTGATGCGTATCT
TTTTTTTTAACAAGCTTCCTCTCTACGACCGATCCCCACAGGAAAACCTG
GGAGGGAGGGACGCAGCCAAATACTCTCCTAGTACAGTCAAAATATTGCA
CGCCATGGCTTCTCACGCAGAAGGCTCTCTCTTTGCCATGTCGCCTATCA
AAGAGGGTTCCGTGGAACGTTGCGTAGATTCGAGCCGTTACTTTGTTCTG
AAGGTTCAAAACGCTGCGGGCAAGCATGCCTTCATCGGTGTCGCCTTCGA
TGAACGGGAGCAAGCCTTCGATTTCAACGTGGCGATCCAGGAGTACGAGA
AAGACAAAGAGCGGGAAGAGCGGCTGAGGACAGGCGTGGGCGCGGGCGGA
GTGGATTCCATGGGAGCTGGCATCCCAAAGCGGGACTTAAGCCTGAAGGA
GGGCGAAAAAATCTCGATCAAGCTACCGACACGCCAAGGCGGGGAGCGGA
GGCCACGCGGAATCGGGAAAGAGTCCAGCGGGAACGGAGTGCTACCGCCC
CCTCCAGGGTCTTGTCGGGGGGGAGGAGGGTTGCTGGCACCACCACCCTC
GACGGGTTCCGGGGGGGGGAAAGTGTATGGAGGGGCTGCGGCACATGACG
ATTTTTTCCGCGGCACGGGGAGCCTAGCGGCGGGCCCGCCCCCTCGGAAA
GAGGACGGCACCGAGTCCTCCGGGCCGCTGCCATCCGTTTCCGCCCATCG
GTCTCCTGCTACGCCCGCGCCGTCGGGTTTCCCCGATGACTTTGGAGGCT
TTGTGGCTCCCAGTAACCCGCCTTCCTCCTCCCCCTCCCCCGCCGCAACC
CGCTTTCCCACCGCCTTTCCTATTCCTCGCGCCCCGGTCTCGGGCCACGG
CGCGGGGAAGTCCTGCCCCTTCGACGGTCTCAGTGCCCTGGGTGACGACT
TGGCCTCTCAATCGGCCCCGTGGGGCGCCAAGAGTAACACTTCCAACAGC
GATCCTTTCGCGGACCTGCTGCCGTTCAAGTAAAGGACGCCGTCGAGCGC
ACCCTCTGCCAGATCCGATCAGTGCATGTGTTCAAGATCCCCCCTCGAAC
GAGCGCAGGAGGGTACCGAGCCTCTGACTGGAAAGACGAGGTGTGGCAAG
GTGCTGTTAAGATTGTTCAAAAAGGACTGGACGCTGCGATCGTTCTAACG
GATCCCAAGACTGATGCGTATCTTTTTTTTTAACAAGCTTCCTCTCTACG
ACCGATCCCCACAGGAAAACCTGGGAGGGAGGGACGCAGCCAAATACTCT
CCTAGTACAGTCAAAATATTGCACGCCATGGCTTCTCACGCAGAAGGCTC
TCTCTTTGCCATGTCGCCTATCAAAGAGGGTTCCGTGGAACGTTGCGTAG
ATTCGAGCCGTTACTTTGTTCTGAAGGTTCAAAACGCTGCGGGCAAGCAT
GCCTTCATCGGTGTCGCCTTCGATGAACGGGAGCAAGCCTTCGATTTCAA
CGTGGCGATCCAGGAGTACGAGAAAGACAAAGAGCGGGAAGAGCGGCTGA
GGACAGGCGTGGGCGCGGGCGGAGTGGATTCCATGGGAGCTGGCATCCCA
AAGCGGGACTTAAGCCTGAAGGAGGGCGAAAAAATCTCGATCAAGCTACC
GACACGCCAAGGCGGGGAGCGGAGGCCACGCGGAATCGGGAAAGAGTCCA
GCGGGAACGGAGTGCTACCGCCCCCTCCAGGGTCTTGTCGGGGGGGAGGA
GGGTTGCTGGCACCACCACCCTCGACGGGTTCCGGGGGGGGGAAAGTGTA
TGGAGGGGCTGCGGCACATGACGATTTTTTCCGCGGCACGGGGAGCCTAG
CGGCGGGCCCGCCCCCTCGGAAAGAGGACGGCACCGAGTCCTCCGGGCCG
CTGCCATCCGTTTCCGCCCATCGGTCTCCTGCTACGCCCGCGCCGTCGGG
TTTCCCCGATGACTTTGGAGGCTTTGTGGCTCCCAGTAACCCGCCTTCCT
CCTCCCCCTCCCCCGCCGCAACCCGCTTTCCCACCGCCTTTCCTATTCCT
CGCGCCCCGGTCTCGGGCCACGGCGCGGGGAAGTCCTGCCCCTTCGACGG
TCTCAGTGCCCTGGGTGACGACTTGGCCTCTCAATCGGCCCCGTGGGGCG
CCAAGAGTAACACTTCCAACAGCGATCCTTTCGCGGACCTGCTGCCGTTC
AAGTAAAGGACGCCGTCGAGCGCACCCTCTGCCAGATCCGATCAGTGCAT
GTGTTCAAGATCCCCCCTCGAACGAGCGCAGGAGGGTACCGAGCCTCTGA
CTGGAAAGACGAGGTGTGGCAAGGTGCTGTTAAGATTGTTCAAAAAGGAC
TGGACGCTGCGATCGTTCTAACGGATCCCAAGACTGATGCGTATCTTTTT
TTTTAACAAGCTTCCTCTCTACGACCGATCCCCACAGGAAAACCTGGGAG
GGAGGGACGCAGCCAAATACTCTCCTAGTACAGTCAAAATATTGCACGCC
ATGGCTTCTCACGCAGAAG

Synonyms

Publications