rna6796, rna6796 (mRNA) Nannochloropsis gaditana

Overview
Namerna6796
Unique Namerna6796
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1615
Alignment locationCM002469.1:524185..525017 +

Link to JBrowse

Properties
Property NameValue
ProductTranscription factor IIIC, putative zinc-finger
Orig transcript idgnl|cribi|Naga_100161g1.9651.mrna
Orig protein idgnl|cribi|Naga_100161g1.9651
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:524185..525017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100161g1gene6570Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6796rna6796-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23882.1cds6780Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6796 ID=rna6796|Name=rna6796|organism=Nannochloropsis gaditana|type=mRNA|length=1615bp
CAGGCGCCCGTCCGCTGCCCATCGTATGGCATCAGGATGCTGTAGCGTAT
CGTACAAAACGAGCTTTTGCTCCAGACACGAGCACGGGGCACGGGCTGCT
GGCGGAAGGGACGGTTGGTCCATGCGGTACCTTGATGAGGACAAACCAGC
CCCCCCGATGGGGAAGACAGGCTACGAAACGGTATCACGGTAGGCCAGCT
AATGTCTGTGTAGATTGAGCGGGCATGAAAGGATCATGAGCTCACAAAGC
AGACCAAATGACGGCACAATCTACCAAGCTCAGCGACCTCCCCTCCTGGG
TACCTCCTCTCCTCCTTTTACCATGGCTAAATCATCACCAACGACTCACA
CATGACCGGAAGCACAAAATGGGGATCGTCACACGTTTTCCTAAGGATAT
GGCCACATTCTGGGCCCTTTGACATTTGATTCTGACTTGGTCGGGGTAAC
GTGTCTCACGCGATTCGTCTTCTCCCCCACCCTCATACTCATAGGGGTAT
ACGCCTGCATTCTTACCCCGCATTTTCTAACATCGTCTCCCGTTTTTCGA
AATGCGAGTCTGCGTCTTTGCATCCTCAAGCTCACTTACACCGGAGCCAT
ATCTCAAGGTGGCACGTGAGTTGGGGGAGGAGATAGCCAAGGCGCAGTAC
CTCTGCATCAATGGCGGAGGCAAAAACGGGTGTATGGGTGCCTTGAATGA
GGGGGCGCGGGCCGGTGGAGGCAAGATCAAGACGGTCATCCACGGAAAGT
GGGTGATAGACAAGATGGAGTTCGAGGACGTGGACGAGCTCGTGATCGCC
CAGGGCAACAATCTGCAGGAACGGAAGCGTTTGTTGTGGGAGACCTGTGA
CTGTGTGATAGTCTTGCCCGGCGGGACAGGGACGTGGGACGAATTAATGG
AGGTGGCCTGCCACAATTCTGTGGGTTTCGGGAAAATCCCCATCACCCTC
GTCAATGTGGATGGCTTTTACGACGGCATTATCCAGCAGGTGGCGCGGGC
AGCCCGGGATAAAATCCTGTATGCCACCCCTGACGACACCATGCACGTGG
AGACAACTGCTCAAGGCGCTCTGTCCTGGTGCGCAAAGCGGGTGCAAGCC
CAACGGGAGGCTGGAGGTGCTCTAGGGGGCGACGCCCTGGTTTTGCAAGG
ACGAACCAGGACGTTTATCTTCCAGCGGCGGCACTCCTTTTTGGTCGGTC
TGGTGCTTGGCTTTGCAGGCGCGATCTTGACGGTGGGAGAGGCAGCCTTA
CTCAATCGATTCTGGAGGAAACGTCAGGCTGGAAGGCACTTCTAGATAGA
CTTTTAGAGAGCGCGAACTCTCAATAGGTCTAGCGGGTGAAGAATGTGAA
GGTGTCATTTATGGGCTAGCAACTTTAAAGCATGTACACCTAGAAGGAAC
GACTTGCGCTCCAACGGGAGGGACTGCCCTCGTTTAGTCAGTCCCGTTTT
AATTTAGGTCCCTTTTTTCCTTTTTCGAACATTTTTCCTCAATTATCAGA
GGTTCTGTGTGGTACGAAGACCGCCTGCAACCAAAAAATCGCATGAGACG
ACCGGCGTCATCTTCCAGCACGCTAGAAACGTCGCGATGAGAGTTCAAAG
AGCGCGAATACGAAG
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protein sequence of rna6796

>rna6796-protein ID=rna6796-protein|Name=rna6796|organism=Nannochloropsis gaditana|type=polypeptide|length=234bp
MDRPPSVWHALHAMCTHMSRKFFGEAIGYLEEYARLLLMARIHLTAAYVD
RSFEKLLAEEGGRRRIFSRAERQIARAMTRWVRANLVFLQELDRPQGSGG
VTWESLAGQVEALSGQPEGGNEGGEEEEEERCVICDGAMLSDEMRNFTGT
CVRGHAVGRCMETFMLIRSSEVWECPLCNSMAAPSRASLGQEGEIFENET
STGVLLERPSWLKPWHTRGMTCLYCNVPCRLANT
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mRNA from alignment at CM002469.1:524185..525017+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6796 ID=rna6796|Name=rna6796|organism=Nannochloropsis gaditana|type=mRNA|length=833bp|location=Sequence derived from alignment at CM002469.1:524185..525017+ (Nannochloropsis gaditana)
atgGACAGGCCGCCCAGCGTCTGGCATGCCTTGCATGCCATGTGTACCCA
CATGTCTCGGAAGTTCTTTGGCGAGGCAATAGGGTACCTGGAGGAGTATG
CACGCCTGCTCTTAATGGCTCGGATTCATCTGACGGCCGCATACGTGGAC
CGGAGCTTCGAGAAACtgctggcagaggagggagggaggaggcgaattTT
CTCCCGGGCGGAGCGACAGATCGCAAGGGCCATGACGCGGTGGGTGCGAG
CGAATCTTGTGTTTCTGCAGGAGTTGGATCGACCCCAGGGCTCGGGGGGA
GTGACATGGGAGTCTCTGGCCGGTCAGGTGGAGGCACTTAGTGGAcagcc
cgagggagggaacgaggggggggaggaggaggaggaggagagatgcGTGA
TCTGCGACGGCGCTATGTTGTCGGACGAGATGAGGAATTTTACGGGAACC
TGTGTCCGCGGGCATGCGGTGGGGAGGTGCATGGAGACCTTCATGCTGAT
TCGCTCTTCCGAGGTCTGGGAGTGCCCCCTATGCAATTCCATGGCTGCCC
CCTCGCGCGCCTCGCTGGGACAAGAGGGGGAGATATTCGAGAACGAGACG
TCCACAGGGGTACTGCTGGAGCGGCCATCCTGGCTGAAACCCTGGCATAC
CCGTGGCATGACTTGTCTCTACTGCAATGTTCCTTGTCGGCTGGCGAACA
CGTGATATGCAGGGTCGGGAGGGTACATTGCGTACGTTTTTCGGGGTTCC
CGGGCGCTCGCATCAAACAAAGCAATAAATGTAGAGCACGCACATCAAGA
AGACCGCTGTGCGTGATTATGAATGTACAAATC
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Coding sequence (CDS) from alignment at CM002469.1:524185..525017+

>rna6796 ID=rna6796|Name=rna6796|organism=Nannochloropsis gaditana|type=CDS|length=705bp|location=Sequence derived from alignment at CM002469.1:524185..525017+ (Nannochloropsis gaditana)
atgGACAGGCCGCCCAGCGTCTGGCATGCCTTGCATGCCATGTGTACCCA
CATGTCTCGGAAGTTCTTTGGCGAGGCAATAGGGTACCTGGAGGAGTATG
CACGCCTGCTCTTAATGGCTCGGATTCATCTGACGGCCGCATACGTGGAC
CGGAGCTTCGAGAAACtgctggcagaggagggagggaggaggcgaattTT
CTCCCGGGCGGAGCGACAGATCGCAAGGGCCATGACGCGGTGGGTGCGAG
CGAATCTTGTGTTTCTGCAGGAGTTGGATCGACCCCAGGGCTCGGGGGGA
GTGACATGGGAGTCTCTGGCCGGTCAGGTGGAGGCACTTAGTGGAcagcc
cgagggagggaacgaggggggggaggaggaggaggaggagagatgcGTGA
TCTGCGACGGCGCTATGTTGTCGGACGAGATGAGGAATTTTACGGGAACC
TGTGTCCGCGGGCATGCGGTGGGGAGGTGCATGGAGACCTTCATGCTGAT
TCGCTCTTCCGAGGTCTGGGAGTGCCCCCTATGCAATTCCATGGCTGCCC
CCTCGCGCGCCTCGCTGGGACAAGAGGGGGAGATATTCGAGAACGAGACG
TCCACAGGGGTACTGCTGGAGCGGCCATCCTGGCTGAAACCCTGGCATAC
CCGTGGCATGACTTGTCTCTACTGCAATGTTCCTTGTCGGCTGGCGAACA
CGTGA
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Synonyms
Publications