EWM23882.1, cds6780 (CDS) Nannochloropsis gaditana

Overview
NameEWM23882.1
Unique Namecds6780
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:524185..524889 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23882.1
ProductTranscription factor IIIC, putative zinc-finger
Orig transcript idgnl|cribi|Naga_100161g1.9651.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:524185..524889 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR024764TFIIIC_Znf
Homology
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BLAST of EWM23882.1 vs. NCBI_GenBank
Match: gi|585105163|gb|EWM23882.1| (Transcription factor IIIC, putative zinc-finger [Nannochloropsis gaditana])

HSP 1 Score: 481.485 bits (1238), Expect = 5.648e-172
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0 
Query:    1 MDRPPSVWHALHAMCTHMSRKFFGEAIGYLEEYARLLLMARIHLTAAYVDRSFEKLLAEEGGRRRIFSRAERQIARAMTRWVRANLVFLQELDRPQGSGGVTWESLAGQVEALSGQPEGGNEGGEEEEEERCVICDGAMLSDEMRNFTGTCVRGHAVGRCMETFMLIRSSEVWECPLCNSMAAPSRASLGQEGEIFENETSTGVLLERPSWLKPWHTRGMTCLYCNVPCRLANT 234
            MDRPPSVWHALHAMCTHMSRKFFGEAIGYLEEYARLLLMARIHLTAAYVDRSFEKLLAEEGGRRRIFSRAERQIARAMTRWVRANLVFLQELDRPQGSGGVTWESLAGQVEALSGQPEGGNEGGEEEEEERCVICDGAMLSDEMRNFTGTCVRGHAVGRCMETFMLIRSSEVWECPLCNSMAAPSRASLGQEGEIFENETSTGVLLERPSWLKPWHTRGMTCLYCNVPCRLANT
Sbjct:    1 MDRPPSVWHALHAMCTHMSRKFFGEAIGYLEEYARLLLMARIHLTAAYVDRSFEKLLAEEGGRRRIFSRAERQIARAMTRWVRANLVFLQELDRPQGSGGVTWESLAGQVEALSGQPEGGNEGGEEEEEERCVICDGAMLSDEMRNFTGTCVRGHAVGRCMETFMLIRSSEVWECPLCNSMAAPSRASLGQEGEIFENETSTGVLLERPSWLKPWHTRGMTCLYCNVPCRLANT 234
The following BLAST results are available for this feature:
BLAST of EWM23882.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105163|gb|EWM23882.1|5.648e-172100.00Transcription factor IIIC, putative zinc-finger [N... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6796rna6796Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications