rna6779, rna6779 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6779
Unique Name	rna6779
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1964
Alignment location	CM002469.1:485881..486958 -

Link to JBrowse

Properties


Property Name	Value
Product	beta-hydroxyacyl-acp dehydratase precursor
Orig transcript id	gnl\|cribi\|Naga_100113g7.9970.mrna
Orig protein id	gnl\|cribi\|Naga_100113g7.9970
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:485881..486958 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100113g7	gene6553	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6779	rna6779-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23904.1	cds6763	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:485881..486958-
coding sequence from alignment at CM002469.1:485881..486958-

mRNA sequence

>rna6779 ID=rna6779|Name=rna6779|organism=Nannochloropsis gaditana|type=mRNA|length=1964bp
GGCCAATTCTAGGTGTGCGGCAAATGGATGCGGGACTACAGTGTAGTAGT
CGGATGGTGTGGGGTTTTCTTGCTACGAGGGCTCCGGCGGAGGACTGCTT
GCGTGCTCGTATCTGTCATGGAGAGATCGTGTCGGGTCACCACGGACTGT
GGGTTGGATGATGGCGCACGAACGAGAGCGCCGCTGTATGTATAGTACGT
CTTCAAATGGATATGCACGCTTACAGGCCCTTTACTTCCATTTCACCTAC
AAGATGATGTGTTAGCTTGATCTTGGCAGAGTGTGAGTGAGCTTTGATTG
CTTGGCAGTGTGCATCTACATCTCTTGCCTTTCCTTCCACAACATGAGCA
GGGACATCATGACCGTTGGTGACGGATTTTACCTTCGGTACTACGTGGGA
CACAAGGGGAAATTTGGGCACGAATTCATGGAATTCGAAATTAATCCCTC
GGGTCTTTTGAGGTACGCCAATAACTCTAAATACAAGAACGCCAAGATGA
TCCGGAAACAAGTATACCTTTCTCAAACTGTACTGAGCGAATTTCAACGC
ATCGTTGAGGAGTCCCAGATCGTGGCGGAAGATGATAAAGATTGGCCGGA
ACCAGACCGGGTCGGGAAGCAGGAGCTGGAGGTCCGTCTCGGAGAATCCC
ACATCCGCTTTACCTGCGCCAAGATTGGATCGCTCCTGGATGTGCAGGAC
AGCAAAGATCCTGAAGGCCTGAGGATATTTTATTATCTCGTTCAAGATTT
GCGGTGCCTCCTCTTCTCATTAATCGGTCTGCATTTCAAGATCAAGCCTA
TCCCTACCTGAGGCCTGCTCAGGCTATCCGTCAAGTCACAGGAAATGCGA
CTGAGTTTGTTGTATTGATGCGAGAGTACCGGGCTCAGACGGTCTACAAG
GTAAAATGAAAAGCAAAATAGAAAACAGAGCCTCCGCCCAAGCGACACAT
CGTCCGCGAGATAGAATGGGATGTTAACTTCCTTTTTTTAAAACGCTTTG
GGAGACCTTTCGCGCAAAAAGAGAACTTGAAAGGAGTTTGGAATGACCTA
CAACACACACAATAACACGTCTTGACGTCAGGCCGAGATTCACGCAAGCA
CAGCCTTCAGGAGAAATGAAGAAAATATCGCAGATGATTCATCACATGTG
CATACATCTTCGACTGGTTTGTGTAGGCTATGACCATTTGCCGGAGTACA
TGCCAACATAGACTAACACATAAAGACACACAGGGGGAGAAAGGAAGACG
TATGACGACTTTCGCTCAAGCATTTGGGTGGATCACGACACAATGAGAAA
CACGTGGCACAGACGCCGCCCCTATACGGGCCACGCACACGCAGTGATTC
TTGTTGTAATCTCATCGATGTTGCATTCTCACATGAGAAAGGAACGGCAC
ACAGCTGCTATATCCTCGGGCGAATTACCAGCGATGACACCACCTCCTGT
CGCCTGCCGCTGTCCCATTGCTCCTCCTGCTCACTTGGACAGGGCAAAAG
TCATCTCCTACCGAGTTATTTCAAAAAAGGGCCAGATAGCATTACAAGAT
GCAATGTGTAACCATATGGTGCGCATGAGAGAAAATTACGGACGTTAAGT
GAGACACGACACACCGACACACACATATCTAAAGCTTACACATTTGCACA
CGCGTTTTCACATTGATGCCCCACCTCCTGGAGCTCGTACCTTGATTTCG
ACGGCCACGTCGCCATCGACGTACGCCTTCCCCTTCAGCTTGGCTATGCC
AAACGACTCCATGAACTTGACCAGTTCCACCTCCATGACCAGAGTGTCCC
CCGGCACCACAGGCTTTCGAAATTTGACCCCATCGATACCTGTGGGTCAT
TTTGCCGGTAGAACGGCCCAATGTATCCTGAGAACGCACGCCAGGACCCT
CAAAAGGTCGTCCGAGGGGCATCCCTGCAAGGCCCTGCACGCCACGCAGT
CATAACCTCATGCG

protein sequence of rna6779

>rna6779-protein ID=rna6779-protein|Name=rna6779|organism=Nannochloropsis gaditana|type=polypeptide|length=202bp
MHLLAALVALPAMCTAFVVPLPSAPKHAVRMMADGDAAGAEWRGGQAASA
VSKDLKTLLTNENVASILPHRYPFLLVDKVIEMEPGKKAVGIKQITANEP
QFTGHFPERPIMPGVLMVEAMAQLSGVLCLQPPVSDGKGLFFFAGIDGVK
FRKPVVPGDTLVMEVELVKFMESFGIAKLKGKAYVDGDVAVEIKEMTFAL
SK

mRNA from alignment at CM002469.1:485881..486958-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6779 ID=rna6779|Name=rna6779|organism=Nannochloropsis gaditana|type=mRNA|length=1078bp|location=Sequence derived from alignment at CM002469.1:485881..486958- (Nannochloropsis gaditana)
ATGCATCTTCTAGCCGCACTCGTGGCCCTGCCCGCCATGTGCACTGCTTT
TGTCGTTCCGCTACCGTCAGCTCCGAAGGTAAGGCGTTCGAGGTTTCAGC
ATCTGGACTCAGGTCTACCTCAGGGCTCCTTCACGATGTTCGTTTCCCTT
CTTTACACACGTCCAACAGCATGCCGTACGAATGATGGCTGATGGTGACG
CAGCTGGTGCTGAGTGGCGGGGTGGTCAAGCGGCGTCAGCTGTATCGAAG
GATCTGAAAACGCTGCTGACGAACGAGAATGTCGCGTCGATTTTGCCTCA
CCGATACCCCTTCTTGCTGGTGGATAAAGTGATTGAAATGGAGCCGGGGA
AGAAAGCTGTGGGTATCAAGCAAATAACGGCAAATGAACCGCAGTTTACA
GGTCATTTCCCAGAGCGACCAATCATGCCCGGAGTCCTTATGGTGGAGGC
CATGGCTCAGCTCTCAGGCGTGCTCTGCTTGCAGCCTCCTGTCTCTGACG
GCAAAGGTCTCTTCTTTTTTGCCGGTACGTGACACACCAATCAAAAACCA
TCTGAAGGAAAGGACTTCGATACAAGGAAAGTGTATGTGATGCTCGCATG
AGGTTATGACTGCGTGGCGTGCAGGGCCTTGCAGGGATGCCCCTCGGACG
ACCTTTTGAGGGTCCTGGCGTGCGTTCTCAGGATACATTGGGCCGTTCTA
CCGGCAAAATGACCCACAGGTATCGATGGGGTCAAATTTCGAAAGCCTGT
GGTGCCGGGGGACACTCTGGTCATGGAGGTGGAACTGGTCAAGTTCATGG
AGTCGTTTGGCATAGCCAAGCTGAAGGGGAAGGCGTACGTCGATGGCGAC
GTGGCCGTCGAAATCAAGGTACGAGCTCCAGGAGGTGGGGCATCAATGTG
AAAACGCGTGTGCAAATGTGTAAGCTTTAGATATGTGTGTGTCGGTGTGT
CGTGTCTCACTTAACGTCCGTAATTTTCTCTCATGCGCACCATATGGTTA
CACATTGCATCTTGTAATGCTATCTGGCCCTTTTTTGAAATAACTCGGTA
GGAGATGACTTTTGCCCTGTCCAAGTGA

Coding sequence (CDS) from alignment at CM002469.1:485881..486958-

>rna6779 ID=rna6779|Name=rna6779|organism=Nannochloropsis gaditana|type=CDS|length=2436bp|location=Sequence derived from alignment at CM002469.1:485881..486958- (Nannochloropsis gaditana)
GAGATGACTTTTGCCCTGTCCAAGTGAGTATCGATGGGGTCAAATTTCGA
AAGCCTGTGGTGCCGGGGGACACTCTGGTCATGGAGGTGGAACTGGTCAA
GTTCATGGAGTCGTTTGGCATAGCCAAGCTGAAGGGGAAGGCGTACGTCG
ATGGCGACGTGGCCGTCGAAATCAAGCATGCCGTACGAATGATGGCTGAT
GGTGACGCAGCTGGTGCTGAGTGGCGGGGTGGTCAAGCGGCGTCAGCTGT
ATCGAAGGATCTGAAAACGCTGCTGACGAACGAGAATGTCGCGTCGATTT
TGCCTCACCGATACCCCTTCTTGCTGGTGGATAAAGTGATTGAAATGGAG
CCGGGGAAGAAAGCTGTGGGTATCAAGCAAATAACGGCAAATGAACCGCA
GTTTACAGGTCATTTCCCAGAGCGACCAATCATGCCCGGAGTCCTTATGG
TGGAGGCCATGGCTCAGCTCTCAGGCGTGCTCTGCTTGCAGCCTCCTGTC
TCTGACGGCAAAGGTCTCTTCTTTTTTGCCGATGCATCTTCTAGCCGCAC
TCGTGGCCCTGCCCGCCATGTGCACTGCTTTTGTCGTTCCGCTACCGTCA
GCTCCGAAGGAGATGACTTTTGCCCTGTCCAAGTGAGTATCGATGGGGTC
AAATTTCGAAAGCCTGTGGTGCCGGGGGACACTCTGGTCATGGAGGTGGA
ACTGGTCAAGTTCATGGAGTCGTTTGGCATAGCCAAGCTGAAGGGGAAGG
CGTACGTCGATGGCGACGTGGCCGTCGAAATCAAGCATGCCGTACGAATG
ATGGCTGATGGTGACGCAGCTGGTGCTGAGTGGCGGGGTGGTCAAGCGGC
GTCAGCTGTATCGAAGGATCTGAAAACGCTGCTGACGAACGAGAATGTCG
CGTCGATTTTGCCTCACCGATACCCCTTCTTGCTGGTGGATAAAGTGATT
GAAATGGAGCCGGGGAAGAAAGCTGTGGGTATCAAGCAAATAACGGCAAA
TGAACCGCAGTTTACAGGTCATTTCCCAGAGCGACCAATCATGCCCGGAG
TCCTTATGGTGGAGGCCATGGCTCAGCTCTCAGGCGTGCTCTGCTTGCAG
CCTCCTGTCTCTGACGGCAAAGGTCTCTTCTTTTTTGCCGATGCATCTTC
TAGCCGCACTCGTGGCCCTGCCCGCCATGTGCACTGCTTTTGTCGTTCCG
CTACCGTCAGCTCCGAAGGAGATGACTTTTGCCCTGTCCAAGTGAGTATC
GATGGGGTCAAATTTCGAAAGCCTGTGGTGCCGGGGGACACTCTGGTCAT
GGAGGTGGAACTGGTCAAGTTCATGGAGTCGTTTGGCATAGCCAAGCTGA
AGGGGAAGGCGTACGTCGATGGCGACGTGGCCGTCGAAATCAAGCATGCC
GTACGAATGATGGCTGATGGTGACGCAGCTGGTGCTGAGTGGCGGGGTGG
TCAAGCGGCGTCAGCTGTATCGAAGGATCTGAAAACGCTGCTGACGAACG
AGAATGTCGCGTCGATTTTGCCTCACCGATACCCCTTCTTGCTGGTGGAT
AAAGTGATTGAAATGGAGCCGGGGAAGAAAGCTGTGGGTATCAAGCAAAT
AACGGCAAATGAACCGCAGTTTACAGGTCATTTCCCAGAGCGACCAATCA
TGCCCGGAGTCCTTATGGTGGAGGCCATGGCTCAGCTCTCAGGCGTGCTC
TGCTTGCAGCCTCCTGTCTCTGACGGCAAAGGTCTCTTCTTTTTTGCCGA
TGCATCTTCTAGCCGCACTCGTGGCCCTGCCCGCCATGTGCACTGCTTTT
GTCGTTCCGCTACCGTCAGCTCCGAAGGAGATGACTTTTGCCCTGTCCAA
GTGAGTATCGATGGGGTCAAATTTCGAAAGCCTGTGGTGCCGGGGGACAC
TCTGGTCATGGAGGTGGAACTGGTCAAGTTCATGGAGTCGTTTGGCATAG
CCAAGCTGAAGGGGAAGGCGTACGTCGATGGCGACGTGGCCGTCGAAATC
AAGCATGCCGTACGAATGATGGCTGATGGTGACGCAGCTGGTGCTGAGTG
GCGGGGTGGTCAAGCGGCGTCAGCTGTATCGAAGGATCTGAAAACGCTGC
TGACGAACGAGAATGTCGCGTCGATTTTGCCTCACCGATACCCCTTCTTG
CTGGTGGATAAAGTGATTGAAATGGAGCCGGGGAAGAAAGCTGTGGGTAT
CAAGCAAATAACGGCAAATGAACCGCAGTTTACAGGTCATTTCCCAGAGC
GACCAATCATGCCCGGAGTCCTTATGGTGGAGGCCATGGCTCAGCTCTCA
GGCGTGCTCTGCTTGCAGCCTCCTGTCTCTGACGGCAAAGGTCTCTTCTT
TTTTGCCGATGCATCTTCTAGCCGCACTCGTGGCCCTGCCCGCCATGTGC
ACTGCTTTTGTCGTTCCGCTACCGTCAGCTCCGAAG

Synonyms

Publications