EWM23904.1, cds6763 (CDS) Nannochloropsis gaditana

Overview
NameEWM23904.1
Unique Namecds6763
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:486881..486958 -
Alignment locationCM002469.1:486435..486789 -
Alignment locationCM002469.1:486091..486239 -
Alignment locationCM002469.1:485881..485907 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23904.1
Productbeta-hydroxyacyl-acp dehydratase precursor
Orig transcript idgnl|cribi|Naga_100113g7.9970.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:486881..486958 -
CM002469.1supercontigCM002469.1:486435..486789 -
CM002469.1supercontigCM002469.1:486091..486239 -
CM002469.1supercontigCM002469.1:485881..485907 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
GO:0006633fatty acid biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016836hydro-lyase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR010084FabZ
IPR013114FabA_FabZ
IPR029069HotDog_dom
Homology
BLAST of EWM23904.1 vs. NCBI_GenBank
Match: gi|585105186|gb|EWM23904.1| (beta-hydroxyacyl-acp dehydratase precursor [Nannochloropsis gaditana])

HSP 1 Score: 407.527 bits (1046), Expect = 7.320e-144
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0
Query:    1 MHLLAALVALPAMCTAFVVPLPSAPKHAVRMMADGDAAGAEWRGGQAASAVSKDLKTLLTNENVASILPHRYPFLLVDKVIEMEPGKKAVGIKQITANEPQFTGHFPERPIMPGVLMVEAMAQLSGVLCLQPPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMESFGIAKLKGKAYVDGDVAVEIKEMTFALSK 202
            MHLLAALVALPAMCTAFVVPLPSAPKHAVRMMADGDAAGAEWRGGQAASAVSKDLKTLLTNENVASILPHRYPFLLVDKVIEMEPGKKAVGIKQITANEPQFTGHFPERPIMPGVLMVEAMAQLSGVLCLQPPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMESFGIAKLKGKAYVDGDVAVEIKEMTFALSK
Sbjct:    1 MHLLAALVALPAMCTAFVVPLPSAPKHAVRMMADGDAAGAEWRGGQAASAVSKDLKTLLTNENVASILPHRYPFLLVDKVIEMEPGKKAVGIKQITANEPQFTGHFPERPIMPGVLMVEAMAQLSGVLCLQPPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMESFGIAKLKGKAYVDGDVAVEIKEMTFALSK 202          
BLAST of EWM23904.1 vs. NCBI_GenBank
Match: gi|553184944|ref|XP_005854174.1| (3-hydroxyacyl-CoA dehydrogenase [Nannochloropsis gaditana CCMP526] >gi|422294885|gb|EKU22185.1| 3-hydroxyacyl-CoA dehydrogenase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 346.28 bits (887), Expect = 4.657e-120
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0
Query:   32 MADGDAAGAEWRGGQAASAVSKDLKTLLTNENVASILPHRYPFLLVDKVIEMEPGKKAVGIKQITANEPQFTGHFPERPIMPGVLMVEAMAQLSGVLCLQPPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMESFGIAKLKGKAYVDGDVAVEIKEMTFALSK 202
            MADGDAAGAEWRGGQAASAVSKDLKTLLTNENVASILPHRYPFLLVDKVIEMEPGKKAVGIKQITANEPQFTGHFPERPIMPGVLMVEAMAQLSGVLCLQPPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMESFGIAKLKGKAYVDGDVAVEIKEMTFALSK
Sbjct:    1 MADGDAAGAEWRGGQAASAVSKDLKTLLTNENVASILPHRYPFLLVDKVIEMEPGKKAVGIKQITANEPQFTGHFPERPIMPGVLMVEAMAQLSGVLCLQPPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMESFGIAKLKGKAYVDGDVAVEIKEMTFALSK 171          
BLAST of EWM23904.1 vs. NCBI_GenBank
Match: gi|1149076526|gb|AQS99235.1| (3-hydroxyacyl acyl carrier protein dehydratase [Gambierdiscus excentricus])

HSP 1 Score: 242.662 bits (618), Expect = 8.485e-78
Identity = 116/174 (66.67%), Postives = 142/174 (81.61%), Query Frame = 0
Query:   29 VRMMADGDAAGAEWRGGQAASAVSKDLKTLLTNENVASILPHRYPFLLVDKVIEMEPGKKAVGIKQITANEPQFTGHFPERPIMPGVLMVEAMAQLSGVLCLQPPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMESFGIAKLKGKAYVDGDVAVEIKEMTFALSK 202
             R  ADG+    +++G Q  S +++ +  ++ N  VA +LPHRYPFLLVDKV+  EPGKK VG+K +TANEPQFTGHFP+RPIMPGVLMVEAMAQL G++CLQ P+SDGKG FFFAGIDG+KFR+PVVPGDTLVME+EL+KF E  GIAK+KG+A+VDG  AVE+KE TFAL K
Sbjct:   83 TRCKADGED---KFKGAQHYSGLTEGVPLVMDNVAVAKVLPHRYPFLLVDKVVAFEPGKKIVGVKNVTANEPQFTGHFPDRPIMPGVLMVEAMAQLGGLVCLQDPISDGKGEFFFAGIDGIKFRRPVVPGDTLVMEMELLKFREKRGIAKMKGRAFVDGQRAVEVKEFTFALVK 253          
BLAST of EWM23904.1 vs. NCBI_GenBank
Match: gi|1149076650|gb|AQS99297.1| (3-hydroxyacyl acyl carrier protein dehydratase [Gambierdiscus belizeanus])

HSP 1 Score: 241.506 bits (615), Expect = 2.550e-77
Identity = 112/162 (69.14%), Postives = 135/162 (83.33%), Query Frame = 0
Query:   41 EWRGGQAASAVSKDLKTLLTNENVASILPHRYPFLLVDKVIEMEPGKKAVGIKQITANEPQFTGHFPERPIMPGVLMVEAMAQLSGVLCLQPPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMESFGIAKLKGKAYVDGDVAVEIKEMTFALSK 202
            EW+G    S +++ +  ++ N  VA +LPHRYPFLLVDKV+  EPGKK VG+K +TANEPQFTGHFP+RPIMPGVLMVEAMAQL G++CLQ P+SDG+G FFFAGIDG+KFRKPVVPGDTLVME+EL+KF E  GIAK+ G+A+VDG  AVE+KE TFAL K
Sbjct:   96 EWKGADYFSGLTESVPLVMDNVAVAKVLPHRYPFLLVDKVVAFEPGKKIVGVKNVTANEPQFTGHFPDRPIMPGVLMVEAMAQLGGLVCLQAPISDGQGEFFFAGIDGIKFRKPVVPGDTLVMEMELLKFREKRGIAKMTGRAFVDGKRAVEVKEFTFALVK 257          
BLAST of EWM23904.1 vs. NCBI_GenBank
Match: gi|873219238|emb|CEM37968.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 230.335 bits (586), Expect = 1.814e-73
Identity = 104/161 (64.60%), Postives = 130/161 (80.75%), Query Frame = 0
Query:   42 WRGGQAASAVSKDLKTLLTNENVASILPHRYPFLLVDKVIEMEPGKKAVGIKQITANEPQFTGHFPERPIMPGVLMVEAMAQLSGVLCLQPPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMESFGIAKLKGKAYVDGDVAVEIKEMTFALSK 202
            WR   + S ++ D+  ++  E +  +LPHRYPFLLVDKVIE EPGK+AVG+K I+ANEPQFTGHFPER IMPGVL +EAMAQL G++CLQ P+SDGKG FFFAG+DGV++++PVVPGD LVME+EL+ +   FGIAK+ G  YVDG  AVE+KE TFAL+K
Sbjct:   65 WRSAASVSELTSDVPVVMDIEAIRKVLPHRYPFLLVDKVIEFEPGKRAVGVKTISANEPQFTGHFPERAIMPGVLQIEAMAQLGGLVCLQEPLSDGKGDFFFAGVDGVRWKRPVVPGDVLVMEMELLSWRAKFGIAKMTGAGYVDGQKAVEVKEFTFALAK 225          
BLAST of EWM23904.1 vs. NCBI_GenBank
Match: gi|397641691|gb|EJK74799.1| (hypothetical protein THAOC_03501 [Thalassiosira oceanica])

HSP 1 Score: 232.261 bits (591), Expect = 2.589e-73
Identity = 115/204 (56.37%), Postives = 153/204 (75.00%), Query Frame = 0
Query:    1 MHLLAALVALPAMCTAFVVPLPSAPKHAVRMMAD--GDAAGAEWRGGQAASAVSKDLKTLLTNENVASILPHRYPFLLVDKVIEMEPGKKAVGIKQITANEPQFTGHFPERPIMPGVLMVEAMAQLSGVLCLQPPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMESFGIAKLKGKAYVDGDVAVEIKEMTFALSK 202
            M  LA +  L A   AF+ P  SA +   ++ ++   D   AE+RG Q  SA++ D+KT  + E++A +LPHRYPFLLVDKV+E E GK+AVGIK +T NEP FTGHFP+RPIMPGVL VEA+AQL+G++CLQ   ++   +FFFAG+DGVK++KPVVPGDTLVMEVE+ K+ + FGIA   G+A+VDG++AVE+ EM FAL+K
Sbjct:   87 MKSLALVGTLLASTGAFMAP--SARRAPTQLFSEEAADETTAEYRGAQVISALTADVKTQFSLEDIAKVLPHRYPFLLVDKVVEYEMGKRAVGIKSVTLNEPHFTGHFPDRPIMPGVLQVEALAQLAGIICLQMEGAEPGAVFFFAGVDGVKWKKPVVPGDTLVMEVEIKKWNKRFGIATATGRAFVDGEMAVELDEMKFALAK 288          
BLAST of EWM23904.1 vs. NCBI_GenBank
Match: gi|237844801|ref|XP_002371698.1| (beta-hydroxyacyl-acyl carrier protein dehydratase (FABZ) [Toxoplasma gondii ME49] >gi|3850997|gb|AAC72191.1| beta-hydroxyacyl-ACP dehydratase precursor [Toxoplasma gondii] >gi|95007480|emb|CAJ20702.1| beta-hydroxyacyl-acp dehydratase precursor [Toxoplasma gondii RH] >gi|523570903|gb|EPR57817.1| beta-hydroxyacyl-acyl carrier protein dehydratase (FABZ) [Toxoplasma gondii GT1] >gi|527315633|gb|EPT32247.1| beta-hydroxyacyl-acyl carrier protein dehydratase (FABZ) [Toxoplasma gondii ME49] >gi|557733441|gb|ESS29593.1| beta-hydroxyacyl-acyl carrier protein dehydratase (FABZ) [Toxoplasma gondii VEG] >gi|672250842|gb|KFG28066.1| beta-hydroxyacyl-acyl carrier protein dehydratase (FABZ) [Toxoplasma gondii p89] >gi|672253794|gb|KFG29871.1| beta-hydroxyacyl-acyl carrier protein dehydratase (FABZ) [Toxoplasma gondii GAB2-2007-GAL-DOM2] >gi|672259677|gb|KFG34420.1| beta-hydroxyacyl-acyl carrier protein dehydratase (FABZ) [Toxoplasma gondii FOU] >gi|672295803|gb|KFG60430.1| beta-hydroxyacyl-acyl carrier protein dehydratase (FABZ) [Toxoplasma gondii RUB] >gi|672563076|gb|KFH03881.1| beta-hydroxyacyl-acyl carrier protein dehydratase (FABZ) [Toxoplasma gondii MAS] >gi|672565007|gb|KFH05410.1| beta-hydroxyacyl-acyl carrier protein dehydratase (FABZ) [Toxoplasma gondii VAND] >gi|820696076|tpe|CEL71813.1| TPA: (3R)-hydroxymyristoyl ACP dehydrase, putative [Toxoplasma gondii VEG] >gi|1005152176|gb|KYF41172.1| beta-hydroxyacyl-acyl carrier protein dehydratase (FABZ) [Toxoplasma gondii ARI] >gi|1008951554|gb|KYK68686.1| beta-hydroxyacyl-acyl carrier protein dehydratase (FABZ) [Toxoplasma gondii TgCatPRC2])

HSP 1 Score: 220.705 bits (561), Expect = 1.702e-69
Identity = 107/190 (56.32%), Postives = 138/190 (72.63%), Query Frame = 0
Query:   21 LPSAPKHAVRMMADG-------DAAGAEWRGGQAASAVSKDLKT-LLTNENVASILPHRYPFLLVDKVIEMEPGKKAVGIKQITANEPQFTGHFPERPIMPGVLMVEAMAQLSGVLCLQPPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMESFGIAKLKGKAYVDGDVAVEIKEMTFALSK 202
            LP    HA R ++          +  + WRG +  S +++     +   E +  ILPHR+PFLLVDKV+E EPGK+AVG+KQI+ANE QF GHFP R I+PGVL VEA+AQL+G++ LQPP+S+G+G FFFAG+DGVK++KPVVPGDTLVMEVEL  + E FGIAK  GKA+VDG  A+E+ EMTFAL +
Sbjct:   42 LPGCSAHAGRGISTSRLDPPSVTSLSSAWRGAKEISGLTESTANPVFDVEKIREILPHRFPFLLVDKVLEFEPGKRAVGVKQISANEDQFNGHFPHRAILPGVLQVEALAQLAGIVALQPPISNGQGNFFFAGVDGVKWKKPVVPGDTLVMEVELTAWKEKFGIAKATGKAFVDGKPAIEVGEMTFALVR 231          
BLAST of EWM23904.1 vs. NCBI_GenBank
Match: gi|401397120|ref|XP_003879985.1| (hypothetical protein NCLIV_004340 [Neospora caninum Liverpool] >gi|325114393|emb|CBZ49950.1| hypothetical protein NCLIV_004340 [Neospora caninum Liverpool] >gi|820688787|tpe|CEL64538.1| TPA: (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase,related [Neospora caninum Liverpool])

HSP 1 Score: 218.394 bits (555), Expect = 1.309e-68
Identity = 101/164 (61.59%), Postives = 129/164 (78.66%), Query Frame = 0
Query:   40 AEWRGGQAASAVSKDLKT-LLTNENVASILPHRYPFLLVDKVIEMEPGKKAVGIKQITANEPQFTGHFPERPIMPGVLMVEAMAQLSGVLCLQPPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMESFGIAKLKGKAYVDGDVAVEIKEMTFALSK 202
            + WRG +  S +++     +   E +  ILPHR+PFLLVDKV+E EPGK+AVG+KQI+ANE QF GHFP R IMPGVL VEA+AQL+G++ LQPP+S+G+G FFFAG+DGVK++KPVVPGDT+VMEVEL  + E FGIAK  GKA+VDG   +E+ EMTFAL +
Sbjct:   69 STWRGAKEISGLTESTAAPVFDVEKIRQILPHRFPFLLVDKVLEFEPGKRAVGVKQISANEDQFNGHFPNRAIMPGVLQVEALAQLAGIVALQPPISNGQGNFFFAGVDGVKWKKPVVPGDTVVMEVELTAWKEKFGIAKATGKAFVDGKPVIEVGEMTFALVR 232          
BLAST of EWM23904.1 vs. NCBI_GenBank
Match: gi|675133210|ref|XP_008888492.1| (beta-hydroxyacyl-acyl carrier protein dehydratase (FABZ) [Hammondia hammondi] >gi|661332742|gb|KEP60911.1| beta-hydroxyacyl-acyl carrier protein dehydratase (FABZ) [Hammondia hammondi])

HSP 1 Score: 218.009 bits (554), Expect = 1.919e-68
Identity = 102/162 (62.96%), Postives = 128/162 (79.01%), Query Frame = 0
Query:   42 WRGGQAASAVSKDLKT-LLTNENVASILPHRYPFLLVDKVIEMEPGKKAVGIKQITANEPQFTGHFPERPIMPGVLMVEAMAQLSGVLCLQPPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMESFGIAKLKGKAYVDGDVAVEIKEMTFALSK 202
            WRG +  S +++     +   E +  ILPHR+PFLLVDKV+E EPGK+AVG+KQI+ANE QF GHFP R IMPGVL VEA+AQL+G++ LQPP+S+G+G FFFAG+DGVK++KPVVPGDTLVMEVEL  + E FGIAK  GKA+VDG   +E+ EMTFAL +
Sbjct:   70 WRGAKEISGLTESTAGPVFDVEKIREILPHRFPFLLVDKVLEFEPGKRAVGVKQISANEDQFNGHFPHRAIMPGVLQVEALAQLAGIVALQPPISNGQGNFFFAGVDGVKWKKPVVPGDTLVMEVELTAWKEKFGIAKATGKAFVDGKPVIEVGEMTFALVR 231          
BLAST of EWM23904.1 vs. NCBI_GenBank
Match: gi|916427034|ref|XP_013234748.1| ((3R)-hydroxymyristoyl ACP dehydrase, putative [Eimeria tenella] >gi|557149642|emb|CDJ43999.1| (3R)-hydroxymyristoyl ACP dehydrase, putative [Eimeria tenella])

HSP 1 Score: 216.083 bits (549), Expect = 3.161e-67
Identity = 99/162 (61.11%), Postives = 128/162 (79.01%), Query Frame = 0
Query:   42 WRGGQAASAVSKDLKT-LLTNENVASILPHRYPFLLVDKVIEMEPGKKAVGIKQITANEPQFTGHFPERPIMPGVLMVEAMAQLSGVLCLQPPVSDGKGLFFFAGIDGVKFRKPVVPGDTLVMEVELVKFMESFGIAKLKGKAYVDGDVAVEIKEMTFALSK 202
            +R     S+++  ++T   T E +  ILPHRYPFLLVDKV+  E GK+AVG+K I+ NE QF GHFPER +MPGVL VEA+AQL+GV+ LQPP+SDGKG+FFFAG +GVK++KPV+PGD+LVME ELV + E FGIAK KG+ +VDG +AVE++EMTFA  +
Sbjct:  104 YRDASWVSSLTSSVRTPAFTAEQIKQILPHRYPFLLVDKVVFFEAGKRAVGVKNISNNENQFNGHFPERAVMPGVLQVEALAQLAGVVALQPPLSDGKGIFFFAGANGVKWKKPVLPGDSLVMEAELVTWKEKFGIAKFKGRGFVDGQLAVEVEEMTFAFGR 265          
The following BLAST results are available for this feature:
BLAST of EWM23904.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105186|gb|EWM23904.1|7.320e-144100.00beta-hydroxyacyl-acp dehydratase precursor [Nannoc... [more]
gi|553184944|ref|XP_005854174.1|4.657e-120100.003-hydroxyacyl-CoA dehydrogenase [Nannochloropsis g... [more]
gi|1149076526|gb|AQS99235.1|8.485e-7866.673-hydroxyacyl acyl carrier protein dehydratase [Ga... [more]
gi|1149076650|gb|AQS99297.1|2.550e-7769.143-hydroxyacyl acyl carrier protein dehydratase [Ga... [more]
gi|873219238|emb|CEM37968.1|1.814e-7364.60unnamed protein product [Vitrella brassicaformis C... [more]
gi|397641691|gb|EJK74799.1|2.589e-7356.37hypothetical protein THAOC_03501 [Thalassiosira oc... [more]
gi|237844801|ref|XP_002371698.1|1.702e-6956.32beta-hydroxyacyl-acyl carrier protein dehydratase ... [more]
gi|401397120|ref|XP_003879985.1|1.309e-6861.59hypothetical protein NCLIV_004340 [Neospora caninu... [more]
gi|675133210|ref|XP_008888492.1|1.919e-6862.96beta-hydroxyacyl-acyl carrier protein dehydratase ... [more]
gi|916427034|ref|XP_013234748.1|3.161e-6761.11(3R)-hydroxymyristoyl ACP dehydrase, putative [Eim... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6779rna6779Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications