rna6770, rna6770 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6770
Unique Name	rna6770
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1689
Alignment location	CM002469.1:459617..461302 -

Link to JBrowse

Properties


Property Name	Value
Product	dihydrodipicolinate synthase
Orig transcript id	gnl\|cribi\|Naga_100082g5.9354.mrna
Orig protein id	gnl\|cribi\|Naga_100082g5.9354
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:459617..461302 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100082g5	gene6544	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6770	rna6770-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23922.1	cds6754	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:459617..461302-
coding sequence from alignment at CM002469.1:459617..461302-

mRNA sequence

>rna6770 ID=rna6770|Name=rna6770|organism=Nannochloropsis gaditana|type=mRNA|length=1689bp
ATGACCCACCACCCCCACGCCGCGGCAACCTCCCGCACCATTATGCGAGC
CCTAGAAGAAATGGAGGGCCAGCCTAGAGAGGAACTGGCAGCATTTTATC
GTCTGAAAAGAGTTTTTTCAAAGTATTCTACGCACACGAGTGGCAGTATC
GCATGCAGCGACCTACTTACATCGCTGGCTAAAGCTATTCTTGCAGAGGG
AGAGGAGGAAGAGGCTGAAAAGACTTCTCAAAAACTAGAAATGCACAATT
TTTTTTCGGCTGCATCAATCGATTCTGCCGTGTTCACATGCCCCACTCGT
CGTTTTGGTCGCACGGAGCTCCAAATGCCAATAATTTCGCTGGGGGGCAT
GCGCTTGCAGCAGACATGGAAGCCCCCCGACGGCTTCTCTCAAGCCGACG
TTTATCCCGAATGCCAGGCAAATTTCGAAGCAATACTGGAACGAGCTTTA
GAACTAGGCATAAACCATATTGAGACCGCTAAAGGCTACGGATCGAGCGA
GCTCCAATACGGAGAGGCCCTCCGAAAGCTTACCACGCCCCGGGAGTCAT
ACATACTTCAAACCAAGGTCCGGCCCATGCCCGACACGGACGAGTTCAGG
CGCACGCTGGACCGCTCCCTCTCTCTGCTGGGGACTCACCTTGACCTTTT
CGGGTTCCACGGCATAAATCGCCCGGAGCACTTGGACTGGGTCCTTCAAC
CTGGCGGCTGCTTGGAGGTGGTGCAGGAGTACCAACAGGAGGGCAGGATC
AGGTTTGTAGGGTTCTCCACACATGCGCCCACCCCTCTTATCGTCAAGGC
CATCGATACGGGGATCTTCGACTACGTCAACCTGCATTACCACGCCATCG
GCTCTTACACGAGTTCGGGCACGTCGGAAAGTCCATCGGCCGGACCTGGA
AATTGGGAGGCAATCGAGGCGGCGCACCGACACGACATGGGCGTCTTTAT
CATCTCGGCTGCCGACAAAGGAGGAATGCTTTACCGCCCGCCTAAAGTCC
TCGTCGGGCTCTGCTCTCCCCTTCCCCCGCTCATCTATAACATGCTTTGG
CTATGGCGGCTTCCCATTGGTCCCTCAGGCGCTCCCGCCGTTCACACGCT
GGTCATCGGCGCCGCCCGGCCCTCGGACTTCGACGAGGCTGTGAGGGCCA
CCAAGCTCCTGGATGAGATTGAGCGGGGGGGCTCGGAGGCTGCGCTGATG
GAAGCCGCGGAGAAGAGGATGAGTCAGGCATCTCGGGAGGTCTGGGGGGA
GGGCTGGGCGGATGACTGGTGGTTGGGCTTGCCGGACTGCTACCAAAATC
TTTGCGGAGTGCACGTGGCGCAGATTGTATGGATGTGGGCGATCACCAAG
GCGTACGGACTGCATCGCTACAGCTGCACGCAGTATTCGAAGCTTGAGGA
CCAGGTACCCGCGTGGAAAGAGAAAGGCCATCTGTCTGTTCAGGAGCGCA
TGGCCACTGTCTTTGACTGGACCCCCGGGCTGCCTTACGACCCCTCGGAG
CAGGAGGAGCTCGCTCCCTTTCTTCCCGCCCCCCGCCGTGAGCGGCTGTT
GTGCATCCTGAGGGAGGCAAGCTCCTGGTTTGGGAAGGAAACAAGCCGCA
ATAGGGGCGTGGGTTTGCAAGAGCAGGAAGGGTGGATAGATGCGTATAAT
TTGCAGCCTGACATACCTTTTCCTGAACGAGTCACCTAG

protein sequence of rna6770

>rna6770-protein ID=rna6770-protein|Name=rna6770|organism=Nannochloropsis gaditana|type=polypeptide|length=346bp
MSRISLVLALTMALAATSSFAFVGPSLHAPAVRSSRRVRMTMNAVDISSR
MPIEKGSMVALVTPMKPDGAVDEAQLRSLLQWHVACQTDGIVVLGTTGEA
STLSFDERARVLDITAEEVKGKIPIVVGTGTIDPRMVVKLTQQARDHGAD
ASLVVTPYYVKPTQKGLISHFGFVAEAVDLPCLLYNVPGRTGSDIKPETA
AEVASKHAGVIGMKEATGDLARVAAIRSLAGQDFLLYSGDDETGAEFVLQ
GGDGVISVTSNIVPEQMHMLMMAALDKDKTRAKAINTPLKLLHQRLFLQA
NPIPVKWALYRMGRMGQAIRPPLTVLEEEFHAPLEEALRAAGVISD

mRNA from alignment at CM002469.1:459617..461302-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6770 ID=rna6770|Name=rna6770|organism=Nannochloropsis gaditana|type=mRNA|length=1686bp|location=Sequence derived from alignment at CM002469.1:459617..461302- (Nannochloropsis gaditana)
ATCCAGCTCATCACGGTAGAAAATTTCGCTGCACCTGTCCTGCGGTTAAG
TATGAGCCGCATAAGTTTGGGTACGTGCTGTTATCAAAATCGCACCATAA
TAACATCGCTATGTCAAATTAACTCCATGGATGAGATGCCAAAATTTGTA
TTCTTTATGCGTCTTCGTCAAAAAATAGGCTTTATTTGATAAAAGGTAGC
AGAAAAGCGGTTGGAGCTTCTTTCGGCAGGAATTGAATTCTTTAACACCG
TGCCCTTTTTCTGTACCCTCGCTCTCATCCGTTTTTCCTTCTTGTCCGAT
AATTATAATCCAAACAGTACTAGCGTTGACGATGGCCTTGGCCGCGACAT
CTAGTTTCGCGTTTGTTGGACCCTCTCTTCATGCACCAGCTGTCAGGTCA
TCTAGACGCGTAAGAATGACGATGAATGCCGTAGACATCAGCTCCCGGAT
GCCAATTGAAAAAGGTAGCATGGTGGCGCTTGTGACGCCTATGAAACCCG
ACGGTGCGGTTGACGAGGCACAGCTTCGTTCCTTATTACAATGGCACGTC
GCATGCCAAACGGACGGGATAGTTGTGCTGGGCACGACAGGAGAAGCTTC
CACACTCTCGTTTGACGAGCGAGCGCGCGTCTTGGACATCACGGCTGAGG
AAGTGAAGGGGAAGATTCCCATTGTAGTCGGGACAGGCACCATTGATCCC
CGCATGGTGGTGAAACTCACGCAACAAGCACGCGATCACGGGGCGGATGC
CAGTCTGGTAGTGACGCCGTACTACGTGAAGCCCACTCAGAAGGGGCTGA
TATCGCACTTCGGTTTTGTGGCCGAGGCTGTCGACCTGCCTTGCCTTCTC
TACAATGTCCCAGGGCGGACAGGCTCGGATATTAAGCCAGAGACTGCGGC
GGAAGTGGCAAGTAAGCACGCTGGCGTGATCGGGATGAAGGAGGCGACGG
GGGACCTGGCGCGAGTGGCGGCCATCCGCTCTCTGGCAGGGCAGGACTTT
CTCCTGTACAGCGGGGACGACGAGACGGGCGCCGAGTTTGTGCTCCAGGG
CGGGGATGGAGTCATTTCGGTTACATCCAATATTGTCCCAGAGCAGATGC
ACATGCTGATGATGGCGGCCTTGGACAAGGACAAGACGCGTGCGAAGGCT
ATCAACACGCCCCTCAAGCTCCTCCACCAGCGCCTCTTCCTTCAGGCGAA
TCCCATTCCGGTCAAATGGGCGCTCTATCGAATGGGTCGCATGGGCCAGG
CCATTCGTCCGCCGCTGACGGTGCTGGAAGAGGAATTCCACGCACCTTTG
GAGGAGGCGCTGAGGGCCGCGGGTGTCATTTCTGATTGAGAAGAGGATTG
CTGTCAATAAAAGGAAGAGCGTGGGTAATGCGAGGAGCGCACAGATGATG
GACATGGAAGTGGGGGGGCTAAAGATAGGTTGAAAGTGCGTTGACATGGG
CTTGGCGTCAGAAAATAAGTGACTGAAATGGAGCCATGGCCCAGATGAGG
CCGTTGTCTGCTTTACTTCGCCTGCGTCGTAGGCGAGGCATCTGAACACT
GCCACGATCGGCGCCAAAAAATTTTATCATCACTCGTCTTACGTTCCTCC
TGCGCAAAATATTATAGGAGGGTCCTTTCCTAATCATTTCAATTTCTGTG
CCTTCCTCATTTCTGCTTGTCGACTTCTGGGCTACC

Coding sequence (CDS) from alignment at CM002469.1:459617..461302-

>rna6770 ID=rna6770|Name=rna6770|organism=Nannochloropsis gaditana|type=CDS|length=2082bp|location=Sequence derived from alignment at CM002469.1:459617..461302- (Nannochloropsis gaditana)
TACTAGCGTTGACGATGGCCTTGGCCGCGACATCTAGTTTCGCGTTTGTT
GGACCCTCTCTTCATGCACCAGCTGTCAGGTCATCTAGACGCGTAAGAAT
GACGATGAATGCCGTAGACATCAGCTCCCGGATGCCAATTGAAAAAGGTA
GCATGGTGGCGCTTGTGACGCCTATGAAACCCGACGGTGCGGTTGACGAG
GCACAGCTTCGTTCCTTATTACAATGGCACGTCGCATGCCAAACGGACGG
GATAGTTGTGCTGGGCACGACAGGAGAAGCTTCCACACTCTCGTTTGACG
AGCGAGCGCGCGTCTTGGACATCACGGCTGAGGAAGTGAAGGGGAAGATT
CCCATTGTAGTCGGGACAGGCACCATTGATCCCCGCATGGTGGTGAAACT
CACGCAACAAGCACGCGATCACGGGGCGGATGCCAGTCTGGTAGTGACGC
CGTACTACGTGAAGCCCACTCAGAAGGGGCTGATATCGCACTTCGGTTTT
GTGGCCGAGGCTGTCGACCTGCCTTGCCTTCTCTACAATGTCCCAGGGCG
GACAGGCTCGGATATTAAGCCAGAGACTGCGGCGGAAGTGGCAAGTAAGC
ACGCTGGCGTGATCGGGATGAAGGAGGCGACGGGGGACCTGGCGCGAGTG
GCGGCCATCCGCTCTCTGGCAGGGCAGGACTTTCTCCTGTACAGCGGGGA
CGACGAGACGGGCGCCGAGTTTGTGCTCCAGGGCGGGGATGGAGTCATTT
CGGTTACATCCAATATTGTCCCAGAGCAGATGCACATGCTGATGATGGCG
GCCTTGGACAAGGACAAGACGCGTGCGAAGGCTATCAACACGCCCCTCAA
GCTCCTCCACCAGCGCCTCTTCCTTCAGGCGAATCCCATTCCGGTCAAAT
GGGCGCTCTATCGAATGGGTCGCATGGGCCAGGCCATTCGTCCGCCGCTG
ACGGTGCTGGAAGAGGAATTCCACGCACCTTTGGAGGAGGCGCTGAGGGC
CGCGGGTGTCATTTCTGATTGAATGAGCCGCATAAGTTTGGTACTAGCGT
TGACGATGGCCTTGGCCGCGACATCTAGTTTCGCGTTTGTTGGACCCTCT
CTTCATGCACCAGCTGTCAGGTCATCTAGACGCGTAAGAATGACGATGAA
TGCCGTAGACATCAGCTCCCGGATGCCAATTGAAAAAGGTAGCATGGTGG
CGCTTGTGACGCCTATGAAACCCGACGGTGCGGTTGACGAGGCACAGCTT
CGTTCCTTATTACAATGGCACGTCGCATGCCAAACGGACGGGATAGTTGT
GCTGGGCACGACAGGAGAAGCTTCCACACTCTCGTTTGACGAGCGAGCGC
GCGTCTTGGACATCACGGCTGAGGAAGTGAAGGGGAAGATTCCCATTGTA
GTCGGGACAGGCACCATTGATCCCCGCATGGTGGTGAAACTCACGCAACA
AGCACGCGATCACGGGGCGGATGCCAGTCTGGTAGTGACGCCGTACTACG
TGAAGCCCACTCAGAAGGGGCTGATATCGCACTTCGGTTTTGTGGCCGAG
GCTGTCGACCTGCCTTGCCTTCTCTACAATGTCCCAGGGCGGACAGGCTC
GGATATTAAGCCAGAGACTGCGGCGGAAGTGGCAAGTAAGCACGCTGGCG
TGATCGGGATGAAGGAGGCGACGGGGGACCTGGCGCGAGTGGCGGCCATC
CGCTCTCTGGCAGGGCAGGACTTTCTCCTGTACAGCGGGGACGACGAGAC
GGGCGCCGAGTTTGTGCTCCAGGGCGGGGATGGAGTCATTTCGGTTACAT
CCAATATTGTCCCAGAGCAGATGCACATGCTGATGATGGCGGCCTTGGAC
AAGGACAAGACGCGTGCGAAGGCTATCAACACGCCCCTCAAGCTCCTCCA
CCAGCGCCTCTTCCTTCAGGCGAATCCCATTCCGGTCAAATGGGCGCTCT
ATCGAATGGGTCGCATGGGCCAGGCCATTCGTCCGCCGCTGACGGTGCTG
GAAGAGGAATTCCACGCACCTTTGGAGGAGGCGCTGAGGGCCGCGGGTGT
CATTTCTGATTGAATGAGCCGCATAAGTTTGG

Synonyms

Publications