EWM23922.1, cds6754 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23922.1 vs. NCBI_GenBank
Match: gi|585105207|gb|EWM23922.1| (dihydrodipicolinate synthase [Nannochloropsis gaditana]) HSP 1 Score: 704.516 bits (1817), Expect = 0.000e+0 Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 0
Query: 1 MSRISLVLALTMALAATSSFAFVGPSLHAPAVRSSRRVRMTMNAVDISSRMPIEKGSMVALVTPMKPDGAVDEAQLRSLLQWHVACQTDGIVVLGTTGEASTLSFDERARVLDITAEEVKGKIPIVVGTGTIDPRMVVKLTQQARDHGADASLVVTPYYVKPTQKGLISHFGFVAEAVDLPCLLYNVPGRTGSDIKPETAAEVASKHAGVIGMKEATGDLARVAAIRSLAGQDFLLYSGDDETGAEFVLQGGDGVISVTSNIVPEQMHMLMMAALDKDKTRAKAINTPLKLLHQRLFLQANPIPVKWALYRMGRMGQAIRPPLTVLEEEFHAPLEEALRAAGVISD 346
MSRISLVLALTMALAATSSFAFVGPSLHAPAVRSSRRVRMTMNAVDISSRMPIEKGSMVALVTPMKPDGAVDEAQLRSLLQWHVACQTDGIVVLGTTGEASTLSFDERARVLDITAEEVKGKIPIVVGTGTIDPRMVVKLTQQARDHGADASLVVTPYYVKPTQKGLISHFGFVAEAVDLPCLLYNVPGRTGSDIKPETAAEVASKHAGVIGMKEATGDLARVAAIRSLAGQDFLLYSGDDETGAEFVLQGGDGVISVTSNIVPEQMHMLMMAALDKDKTRAKAINTPLKLLHQRLFLQANPIPVKWALYRMGRMGQAIRPPLTVLEEEFHAPLEEALRAAGVISD
Sbjct: 1 MSRISLVLALTMALAATSSFAFVGPSLHAPAVRSSRRVRMTMNAVDISSRMPIEKGSMVALVTPMKPDGAVDEAQLRSLLQWHVACQTDGIVVLGTTGEASTLSFDERARVLDITAEEVKGKIPIVVGTGTIDPRMVVKLTQQARDHGADASLVVTPYYVKPTQKGLISHFGFVAEAVDLPCLLYNVPGRTGSDIKPETAAEVASKHAGVIGMKEATGDLARVAAIRSLAGQDFLLYSGDDETGAEFVLQGGDGVISVTSNIVPEQMHMLMMAALDKDKTRAKAINTPLKLLHQRLFLQANPIPVKWALYRMGRMGQAIRPPLTVLEEEFHAPLEEALRAAGVISD 346
BLAST of EWM23922.1 vs. NCBI_GenBank
Match: gi|397575552|gb|EJK49756.1| (hypothetical protein THAOC_31333 [Thalassiosira oceanica]) HSP 1 Score: 325.865 bits (834), Expect = 7.161e-107 Identity = 167/313 (53.35%), Postives = 218/313 (69.65%), Query Frame = 0
Query: 39 RMTMNAVDISSRMPIEKGSMVALVTPMKPDGAVDEAQLRSLLQWHVACQTDGIVVLGTTGEASTLSFDERARVLDITAEEVKGKIPIVVGTGTIDPRMVVKLTQQARDHGADASLVVTPYYVKPTQKGLISHFGFVAEAVDLPCLLYNVPGRTGSDIKPETAAEVASKHAGVIGMKEATGDLARVAAI------RSLAGQDFLLYSGDDETGAEFVLQGGDGVISVTSNIVPEQMHMLMMAALDKDKTRAKAINTPLKLLHQRLFLQANPIPVKWALYRMGRMGQA-IRPPLTVLEEEFHAPLEEALRAAGVI 344
++T + + R PI +GS VAL+TPM P GAV+ A+LR LL+ H+ TDG+ +LGTTGEAS L+ ER +VLD+ EEVKGKIPI+VGTGTIDP V + TQQA D G DASLVVTPYYVKP Q+ L HF +A+ + LP +YNVPGRTG D P++ A+VA H ++ +KEATGD++RV+ I +A LL+SGDD T +FVL GGDG ISVT+NI P +MH LMM+AL KDK IN PL+ LH +F +ANPIP+KWAL RMG++ A +RPPL L + + +E A++ AG++
Sbjct: 41 QLTAVGSNSNERTPIGQGSYVALITPMTPTGAVNLAELRVLLRLHLEAGTDGLCILGTTGEASVLTMAERKQVLDVAVEEVKGKIPILVGTGTIDPEHVKEQTQQAIDCGCDASLVVTPYYVKPPQRALTRHFETIAD-LGLPVCIYNVPGRTGVDFLPDSIAQVAD-HPNIVAVKEATGDVSRVSQIHDALAANGVARDTLLLFSGDDGTTDDFVLSGGDGCISVTANIAPARMHNLMMSALQKDKEEVDRINAPLRNLHSTIFCEANPIPIKWALQRMGKIDCAYLRPPLDELSPDCYGAVEIAMKEAGLL 351
BLAST of EWM23922.1 vs. NCBI_GenBank
Match: gi|676396307|ref|XP_009041431.1| (hypothetical protein AURANDRAFT_33383 [Aureococcus anophagefferens] >gi|323447974|gb|EGB03879.1| hypothetical protein AURANDRAFT_33383 [Aureococcus anophagefferens]) HSP 1 Score: 320.472 bits (820), Expect = 4.977e-105 Identity = 161/289 (55.71%), Postives = 204/289 (70.59%), Query Frame = 0
Query: 56 GSMVALVTPM-KPDGAVDEAQLRSLLQWHVACQTDGIVVLGTTGEASTLSFDERARVLDITAEEVKGKIPIVVGTGTIDPRMVVKLTQQARDHGADASLVVTPYYVKPTQKGLISHFGFVAEAVDLPCLLYNVPGRTGSDIKPETAAEVASKHAGVIGMKEATGDLARVAAIRSLAGQDFLLYSGDDETGAEFVLQGGDGVISVTSNIVPEQMHMLMMAALDKDKTRAKAINTPLKLLHQRLFLQANPIPVKWALYRMGRMGQAIRPPLTVLEEEFHAPLEEALRAAGV 343
GS VALVTPM AVD LRSLL+WHV C T G+V LGTTGEASTLS +ER VL + G +P+V GTGTID + + ++A + GAD +LVVTPYYVKP Q L++HF +A+AVDLP +LYNVPGRTG D+ P T AE+A +H ++G+KEATGD ARVA +R G DFLLYSG+D G EFV GGDGVISVT+N+ P M ++ + +K+ + I+ L+ LH++LF+QANPIPVKWAL+R GRMG IR PL LE +FH +++ALR A V
Sbjct: 20 GSNVALVTPMVAGSNAVDYGALRSLLEWHVECGTAGVVALGTTGEASTLSGEERDEVLRTAVDVCGGVVPVVAGTGTIDTERAIAMGRRAAELGADGTLVVTPYYVKPPQAALVAHFNAIADAVDLPMILYNVPGRTGVDLLPATVAELA-RHDRIVGIKEATGDNARVAVLREQCGDDFLLYSGEDAMGREFVALGGDGVISVTANVAPRDMQTMLA---NPNKSSSIKIDAKLRALHEKLFVQANPIPVKWALHRAGRMGAGIRSPLAALEPQFHEDIDDALRLADV 304
BLAST of EWM23922.1 vs. NCBI_GenBank
Match: gi|504593047|ref|WP_014780149.1| (4-hydroxy-tetrahydrodipicolinate synthase [Thiocystis violascens] >gi|390428697|gb|AFL75762.1| dihydrodipicolinate synthase [Thiocystis violascens DSM 198]) HSP 1 Score: 315.464 bits (807), Expect = 8.970e-104 Identity = 159/290 (54.83%), Postives = 201/290 (69.31%), Query Frame = 0
Query: 55 KGSMVALVTPMKPDGAVDEAQLRSLLQWHVACQTDGIVVLGTTGEASTLSFDERARVLDITAEEVKGKIPIVVGTGTIDPRMVVKLTQQARDHGADASLVVTPYYVKPTQKGLISHFGFVAEAVDLPCLLYNVPGRTGSDIKPETAAEVASKHAGVIGMKEATGDLARVAAIRSLAGQDFLLYSGDDETGAEFVLQGGDGVISVTSNIVPEQMHMLMMAALDKDKTRAKAINTPLKLLHQRLFLQANPIPVKWALYRMGRMGQAIRPPLTVLEEEFHAPLEEALRAAGVI 344
+GS+VAL+TPM DG +D+A L+ L+ +HVA T IV +GTTGE++TL DE V+ T + G+IP++ GTG R + LT+ ARD GA A+L+VTPYY KPTQ+GL H+ VAEAVDLP +LYNVPGRT D+ PET A +A +IG+KEATGDLARV +R G DFLLYSGDD +G EF+L GGDGVISVTSN+ P QM + AAL D+ A A+N PL LH LF+Q+NPIPVKWA MG + IR PLT L EE+HA + A+ AG++
Sbjct: 3 RGSIVALITPMHSDGGIDDASLKRLVDFHVAGGTTAIVAVGTTGESATLDEDEHCEVIGRTVDFAAGRIPVIAGTGANSTREAITLTRCARDVGAAAALLVTPYYNKPTQEGLYLHYKAVAEAVDLPQILYNVPGRTACDMLPETVARLAPIE-NIIGVKEATGDLARVPRLRQDCGDDFLLYSGDDASGCEFMLLGGDGVISVTSNLAPRQMQSMCEAALSGDREGAHALNQPLDALHHELFVQSNPIPVKWAAAEMGLCARGIRLPLTWLSEEYHARVRYAMELAGLV 291
BLAST of EWM23922.1 vs. NCBI_GenBank
Match: gi|1154111006|ref|WP_078486738.1| (4-hydroxy-tetrahydrodipicolinate synthase [Solemya elarraichensis gill symbiont] >gi|1152918796|gb|OOZ36692.1| 4-hydroxy-tetrahydrodipicolinate synthase [Solemya elarraichensis gill symbiont]) HSP 1 Score: 314.309 bits (804), Expect = 3.282e-103 Identity = 153/287 (53.31%), Postives = 201/287 (70.03%), Query Frame = 0
Query: 55 KGSMVALVTPMKPDGAVDEAQLRSLLQWHVACQTDGIVVLGTTGEASTLSFDERARVLDITAEEVKGKIPIVVGTGTIDPRMVVKLTQQARDHGADASLVVTPYYVKPTQKGLISHFGFVAEAVDLPCLLYNVPGRTGSDIKPETAAEVASKHAGVIGMKEATGDLARVAAIRSLAGQDFLLYSGDDETGAEFVLQGGDGVISVTSNIVPEQMHMLMMAALDKDKTRAKAINTPLKLLHQRLFLQANPIPVKWALYRMGRMGQAIRPPLTVLEEEFHAPLEEALRAA 341
+GSMVALVTPM+ +G+VDE LR+L+ WH+ TD IV +GTTGE++TL +E +V+ E G+IP++ GTG ++LTQ A++ GADA L+VTPYY KPTQ+GL H+ VAEAVD+P +LYNVPGRT D+ PET + +K ++G+KEATGDL RV AIR L G+DF LYSGDD TG EFVL GGDGVISVT+N+ P MH ++ A++D + RA ++ L LH LFL+ANPIPVKW L MGR+ IR PLT +E+H + +A+ A
Sbjct: 3 RGSMVALVTPMRENGSVDEESLRALVGWHIDQGTDAIVAVGTTGESATLGEEEHCKVIRQVVEFTAGRIPVIAGTGANSTTEAIRLTQCAKNAGADACLLVTPYYNKPTQEGLYLHYKAVAEAVDIPQILYNVPGRTACDMLPETVGRL-TKVPNIVGIKEATGDLERVGAIRELCGEDFELYSGDDATGREFVLLGGDGVISVTANVAPRVMHDMITASMDGNSERAAQLDEKLAALHHDLFLEANPIPVKWVLAEMGRIPVGIRLPLTWFAQEYHEKMRQAMAQA 288
BLAST of EWM23922.1 vs. NCBI_GenBank
Match: gi|223995213|ref|XP_002287290.1| (hypothetical protein THAPSDRAFT_32140 [Thalassiosira pseudonana CCMP1335] >gi|220976406|gb|EED94733.1| hypothetical protein THAPSDRAFT_32140 [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 311.997 bits (798), Expect = 2.823e-102 Identity = 160/299 (53.51%), Postives = 205/299 (68.56%), Query Frame = 0
Query: 53 IEKGSMVALVTPMKPDGAVDEAQLRSLLQWHVACQTDGIVVLGTTGEASTLSFDERARVLDITAEEVKGKIPIVVGTGTIDPRMVVKLTQQARDHGADASLVVTPYYVKPTQKGLISHFGFVAEAVDLPCLLYNVPGRTGSDIKPETAAEVASKHAGVIGMKEATGDLARVAAI------RSLAGQDFLLYSGDDETGAEFVLQGGDGVISVTSNIVPEQMHMLMMAALDKDKTRAKAINTPLKLLHQRLFLQANPIPVKWALYRMGRMGQA-IRPPLTVLEEEFHAPLEEALRAAGVI 344
+ +GS VALVTPM P G +D LRSLL++H+ TDG+ +LGTTGEA+ ++ ER VLD+ EEVKGK+PI+VGTGTIDP V + T QA D G DASL+VTPYYVKP Q+GLI HF +A+ + LP +YNVPGRTG D PE+ +VA H ++ +KEATGD++RV I + LL+SGDD + EFVL GGDG ISVT+N+ P QMH LMMAAL KD K IN PL+ LH LF +ANPIPVKWA+ R+G++ A +RPPL L + +E A++ G+I
Sbjct: 1 MRQGSYVALVTPMTPTGTIDLPALRSLLRFHLEAGTDGLCILGTTGEAAVMTMTERKSVLDVAVEEVKGKMPILVGTGTIDPEHVKEQTMQAIDCGCDASLLVTPYYVKPPQRGLIKHFETMAD-LGLPVCIYNVPGRTGVDFTPESIGKVAG-HPNIVAVKEATGDVSRVGKIHDAMKDNGVQTDKLLLFSGDDGSTDEFVLAGGDGCISVTANVAPSQMHNLMMAALKKDTDAVKKINDPLRSLHSDLFCEANPIPVKWAVKRIGQIDCAYLRPPLDELCPDLQGKVEAAIKEGGLI 297
BLAST of EWM23922.1 vs. NCBI_GenBank
Match: gi|406939989|gb|EKD72887.1| (hypothetical protein ACD_45C00547G0002 [uncultured bacterium]) HSP 1 Score: 308.916 bits (790), Expect = 3.443e-101 Identity = 148/290 (51.03%), Postives = 204/290 (70.34%), Query Frame = 0
Query: 55 KGSMVALVTPMKPDGAVDEAQLRSLLQWHVACQTDGIVVLGTTGEASTLSFDERARVLDITAEEVKGKIPIVVGTGTIDPRMVVKLTQQARDHGADASLVVTPYYVKPTQKGLISHFGFVAEAVDLPCLLYNVPGRTGSDIKPETAAEVASKHAGVIGMKEATGDLARVAAIRSLAGQDFLLYSGDDETGAEFVLQGGDGVISVTSNIVPEQMHMLMMAALDKDKTRAKAINTPLKLLHQRLFLQANPIPVKWALYRMGRMGQAIRPPLTVLEEEFHAPLEEALRAAGVI 344
KGS+VALVTPM DG +D+ L +L+ WH+ QTDGIVV GTTGEA+TL+ DE+ ++ + +VKG++P++ GTGT ++LT+ A+ GADA+L+VTPYY KPTQ+GL H+ +AE V LP +LYNVP RT D+ PET +A+ + +IG+KEATG +AR I DF++YSGDD T E +L G G ISVT+NIVP +MH L AA+D +K A++IN+ L LH +LFL++NPIP KWAL +MG + IR PL+ L+ +FHA L+EA+ AG++
Sbjct: 3 KGSLVALVTPMHADGTIDKKSLHALIDWHLEAQTDGIVVTGTTGEAATLTEDEQYDIISMVVAQVKGRVPVIAGTGTHSTHHTIELTRNAKKAGADAALIVTPYYNKPTQQGLFEHYKMIAEKVYLPIILYNVPSRTACDLLPETVERLANIDS-IIGIKEATGKIARTIDILKRCRSDFIVYSGDDATALESMLHGTKGTISVTANIVPHKMHQLCQAAIDGNKALAESINSELMPLHIKLFLESNPIPAKWALNQMGLIPPGIRLPLSPLDPKFHADLKEAMHLAGIV 291
BLAST of EWM23922.1 vs. NCBI_GenBank
Match: gi|493504546|ref|WP_006459000.1| (4-hydroxy-tetrahydrodipicolinate synthase [Thioalkalimicrobium aerophilum] >gi|570729974|gb|AHF01194.1| dihydrodipicolinate synthase [Thioalkalimicrobium aerophilum AL3]) HSP 1 Score: 308.916 bits (790), Expect = 4.382e-101 Identity = 156/288 (54.17%), Postives = 199/288 (69.10%), Query Frame = 0
Query: 56 GSMVALVTPMKPDGAVDEAQLRSLLQWHVACQTDGIVVLGTTGEASTLSFDERARVLDITAEEVKGKIPIVVGTGTIDPRMVVKLTQQARDHGADASLVVTPYYVKPTQKGLISHFGFVAEAVDLPCLLYNVPGRTGSDIKPETAAEVASKHAGVIGMKEATGDLARVAAIRSLAGQDFLLYSGDDETGAEFVLQGGDGVISVTSNIVPEQMHMLMMAALDKDKTRAKAINTPLKLLHQRLFLQANPIPVKWALYRMGRMGQAIRPPLTVLEEEFHAPLEEALRAAGV 343
GSMVALVTPM + VD + L SL++WH+A T IV +GTTGE++TL E V+ E+V G+I ++ GTG ++LTQ A+ GADA L+VTPYY KPTQ+GL H +AEAVD+P +LYNVPGRT D++PET +A+ +IG+KEATGDL+RVA I++L DF LYSGDD T +F+L GG G ISVT+N+VPEQ+ AAL D T A I+ PL LLHQRLF++ANPIPVKWAL +M ++ AIR PLT L E FH + EA+ AGV
Sbjct: 5 GSMVALVTPMNENETVDYSALASLIEWHIAAGTQAIVAVGTTGESATLDMTEHCAVIRFVVEKVAGRITVIAGTGANSTTEAIELTQCAKAAGADACLLVTPYYNKPTQEGLFLHHKKIAEAVDIPQILYNVPGRTACDMQPETIGRLATI-PNIIGVKEATGDLSRVAKIQALVPADFYLYSGDDATAVDFILLGGHGGISVTANVVPEQVARAYQAALAGDATLAHQIDQPLALLHQRLFVEANPIPVKWALAKMNKISPAIRLPLTPLSEPFHGLVSEAMNQAGV 291
BLAST of EWM23922.1 vs. NCBI_GenBank
Match: gi|760071208|ref|WP_043754016.1| (4-hydroxy-tetrahydrodipicolinate synthase [Thiorhodococcus sp. AK35] >gi|589832469|gb|EXJ14839.1| Dihydrodipicolinate synthase [Thiorhodococcus sp. AK35]) HSP 1 Score: 308.531 bits (789), Expect = 4.879e-101 Identity = 150/289 (51.90%), Postives = 201/289 (69.55%), Query Frame = 0
Query: 55 KGSMVALVTPMKPDGAVDEAQLRSLLQWHVACQTDGIVVLGTTGEASTLSFDERARVLDITAEEVKGKIPIVVGTGTIDPRMVVKLTQQARDHGADASLVVTPYYVKPTQKGLISHFGFVAEAVDLPCLLYNVPGRTGSDIKPETAAEVASKHAGVIGMKEATGDLARVAAIRSLAGQDFLLYSGDDETGAEFVLQGGDGVISVTSNIVPEQMHMLMMAALDKDKTRAKAINTPLKLLHQRLFLQANPIPVKWALYRMGRMGQAIRPPLTVLEEEFHAPLEEALRAAGV 343
+GS+VAL+TPM PDG +D+A L+ L+ +HV+ T IV +GTTGE++TL DE V+ T E G++P++ GTG + LT+ A+D GADA+L+VTPYY KPTQ+GL H+ VAEAVD+P +LYNVPGRT D+ PET +A ++G+KEATGDL+RVA +R G DF LYSGDD T +F+L GGDGVISVT+N+ P +MH++ AAL D+ RA ++N L LH+ LF+Q+NPIPVKWA +G IR PLT L EE+HA + A+ AG+
Sbjct: 3 RGSLVALITPMHPDGGIDDAGLKRLVDFHVSEGTSAIVAVGTTGESATLDEDEHCHVIARTVEFAAGRLPVIAGTGANSTTEAIALTRCAKDAGADAALLVTPYYNKPTQEGLYLHYKAVAEAVDIPQILYNVPGRTACDMLPETVVRLAEVE-NIVGLKEATGDLSRVATLREGCGADFALYSGDDATACDFMLLGGDGVISVTANVAPHKMHLMCEAALSGDRERALSVNQELDPLHRELFVQSNPIPVKWAAAELGLCPSGIRLPLTRLSEEYHARVRHAMERAGL 290
BLAST of EWM23922.1 vs. NCBI_GenBank
Match: gi|503601310|ref|WP_013835386.1| (4-hydroxy-tetrahydrodipicolinate synthase [Thioalkalimicrobium cyclicum] >gi|333964842|gb|AEG31608.1| Dihydrodipicolinate synthase [Thioalkalimicrobium cyclicum ALM1]) HSP 1 Score: 308.916 bits (790), Expect = 4.940e-101 Identity = 153/288 (53.12%), Postives = 201/288 (69.79%), Query Frame = 0
Query: 56 GSMVALVTPMKPDGAVDEAQLRSLLQWHVACQTDGIVVLGTTGEASTLSFDERARVLDITAEEVKGKIPIVVGTGTIDPRMVVKLTQQARDHGADASLVVTPYYVKPTQKGLISHFGFVAEAVDLPCLLYNVPGRTGSDIKPETAAEVASKHAGVIGMKEATGDLARVAAIRSLAGQDFLLYSGDDETGAEFVLQGGDGVISVTSNIVPEQMHMLMMAALDKDKTRAKAINTPLKLLHQRLFLQANPIPVKWALYRMGRMGQAIRPPLTVLEEEFHAPLEEALRAAGV 343
GSMVALVTPM D VD L L++WH+A T IV +GTTGE++TL E V+ E+V G++ ++ GTG ++LTQ +++ GADA L+VTPYY KPTQ+GL H +AEAVD+P +LYNVPGRT D++PET +A + + +IG+KEATGDLARVA I++L DF LYSGDD T +F+L GG G ISVT+N+VP+Q+ + AAL D A A++ P+ LLHQRLF++ANPIPVKWAL +M R+ AIR PLT L E FH + EA++ AGV
Sbjct: 5 GSMVALVTPMNEDETVDYPALAQLIEWHIAAGTQAIVAVGTTGESATLDMTEHCAVIQFVVEQVAGRVTVIAGTGANSTSEAIELTQCSKNTGADACLLVTPYYNKPTQEGLFLHHKKIAEAVDIPQILYNVPGRTACDMQPETIGRLA-QISNIIGVKEATGDLARVAKIQALVPADFYLYSGDDATAVDFILLGGHGGISVTANLVPDQVALAYQAALRGDAEDAHALDQPMALLHQRLFVEANPIPVKWALSQMQRISPAIRLPLTPLSEPFHGLVSEAMKQAGV 291 The following BLAST results are available for this feature:
BLAST of EWM23922.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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