EWM23930.1, cds6745 (CDS) Nannochloropsis gaditana

Overview
NameEWM23930.1
Unique Namecds6745
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:443087..443159 -
Alignment locationCM002469.1:442742..442962 -
Alignment locationCM002469.1:442315..442497 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23930.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100082g13.9362.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:443087..443159 -
CM002469.1supercontigCM002469.1:442742..442962 -
CM002469.1supercontigCM002469.1:442315..442497 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM23930.1 vs. NCBI_GenBank
Match: gi|585105215|gb|EWM23930.1| (hypothetical protein Naga_100082g13 [Nannochloropsis gaditana])

HSP 1 Score: 322.398 bits (825), Expect = 1.489e-111
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
Query:    1 MYATAHTEPNFGDQSHAFGVIMFPGRRSFLLVLLMVGLIGTATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAVDPARVGTKKDPAYEKCLSSCIYFCLKPKGAETRTRSDCLPDCKAKCAQTDAQKLLGVPKK 158
            MYATAHTEPNFGDQSHAFGVIMFPGRRSFLLVLLMVGLIGTATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAVDPARVGTKKDPAYEKCLSSCIYFCLKPKGAETRTRSDCLPDCKAKCAQTDAQKLLGVPKK
Sbjct:    1 MYATAHTEPNFGDQSHAFGVIMFPGRRSFLLVLLMVGLIGTATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAVDPARVGTKKDPAYEKCLSSCIYFCLKPKGAETRTRSDCLPDCKAKCAQTDAQKLLGVPKK 158          
BLAST of EWM23930.1 vs. NCBI_GenBank
Match: gi|585105216|gb|EWM23931.1| (hypothetical protein Naga_100082g13 [Nannochloropsis gaditana])

HSP 1 Score: 198.364 bits (503), Expect = 3.277e-63
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query:    1 MYATAHTEPNFGDQSHAFGVIMFPGRRSFLLVLLMVGLIGTATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAV 98
            MYATAHTEPNFGDQSHAFGVIMFPGRRSFLLVLLMVGLIGTATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAV
Sbjct:    1 MYATAHTEPNFGDQSHAFGVIMFPGRRSFLLVLLMVGLIGTATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAV 98          
BLAST of EWM23930.1 vs. NCBI_GenBank
Match: gi|1210528263|dbj|GAX12952.1| (hypothetical protein FisN_2Hh442 [Fistulifera solaris])

HSP 1 Score: 93.9745 bits (232), Expect = 4.433e-22
Identity = 49/100 (49.00%), Postives = 64/100 (64.00%), Query Frame = 0
Query:   59 ALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAVDPARVGTKKDPAYEKCLSSCIYFCLKPKGAETRTRSDCLPDCKAKCAQTDAQKLLGVPKK 158
            +L  +  S  +TR   +Q IA +  T     A    A  VDP+  GTKKDP YEKCLS C+Y C KPKG+E ++R +CLP+CK KCA+T AQ +LG PK+
Sbjct:   13 SLSVQAWSSSSTRAQFLQHIAAATAT----VALPAYAKEVDPSVKGTKKDPNYEKCLSVCMYDCTKPKGSEQKSRQECLPECKQKCAKTKAQLMLGTPKE 108          
BLAST of EWM23930.1 vs. NCBI_GenBank
Match: gi|1210525321|dbj|GAX15839.1| (hypothetical protein FisN_2Lh442 [Fistulifera solaris])

HSP 1 Score: 92.4337 bits (228), Expect = 1.779e-21
Identity = 41/64 (64.06%), Postives = 50/64 (78.12%), Query Frame = 0
Query:   95 AAAVDPARVGTKKDPAYEKCLSSCIYFCLKPKGAETRTRSDCLPDCKAKCAQTDAQKLLGVPKK 158
            A  VDPA  GTKKDP YEKCLS C+Y C KPKG+E ++R +CLP+CK KCA+T AQ +LG PK+
Sbjct:   47 AKEVDPAIKGTKKDPNYEKCLSVCMYDCTKPKGSEQKSRQECLPECKQKCAKTKAQLMLGTPKE 110          
BLAST of EWM23930.1 vs. NCBI_GenBank
Match: gi|397620955|gb|EJK66018.1| (hypothetical protein THAOC_13082 [Thalassiosira oceanica])

HSP 1 Score: 92.4337 bits (228), Expect = 4.138e-20
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 0
Query:   68 MATRRVGVQQIAFSLLTPFVLTAGADVAAAVDPARVGTKKDPAYEKCLSSCIYFCLKPKGAETRTRSDCLPDCKAKCAQTDAQKLLGVPKK 158
            ++ R   ++ I       F+L   + +A  +DPA  GTK DP Y+ CLS+CIY C KPKG E +TR++CLP+CK+KCA T  Q L G PK 
Sbjct:   37 VSNRGAFLRHIGAGCAATFLLPTQSAIAKEIDPALKGTKADPEYQSCLSTCIYECTKPKGVEQKTRAECLPECKSKCATTKQQLLTGAPKN 127          
BLAST of EWM23930.1 vs. NCBI_GenBank
Match: gi|219117543|ref|XP_002179565.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408618|gb|EEC48551.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 76.6406 bits (187), Expect = 4.798e-15
Identity = 41/91 (45.05%), Postives = 53/91 (58.24%), Query Frame = 0
Query:   68 MATRRVGVQQIAFSLLTPFVLTAGADVAAAVDPARVGTKKDPAYEKCLSSCIYFCLKPKGAETRTRSDCLPDCKAKCAQTDAQKLLGVPKK 158
            + +RRV    +A +   P    A  DV ++V     GTKKDP YE CLS C+Y C KPKG E ++R+ CLP+CK  CA    Q +LG P K
Sbjct:   44 LQSRRVFGSVLALAWTIP-TTAAAKDVDSSVK----GTKKDPTYEACLSKCVYECTKPKGTEQKSRAVCLPECKQTCATNKEQLMLGQPLK 129          
BLAST of EWM23930.1 vs. NCBI_GenBank
Match: gi|299469712|emb|CBN76566.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 74.3294 bits (181), Expect = 7.421e-14
Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 0
Query:   66 SEMATRRVGVQQIAF--SLLTPFVLTAGADVAAAVDPARVGTKKDPAYEKCLSSCIYFCLKPKGAETRTRSDCLPDCKAKCAQTDAQKLLGVPK 157
            +E+ T R  V    F  + ++ F   + AD  A  DPA  GTK DP +  CLS CIYFC K K  ++R+R +C+P+C+  CA+T AQ ++G P+
Sbjct:   64 AELPTSRKDVLGAVFGAAAMSSFAFVSAAD--AKDDPALKGTKADPEFVTCLSDCIYFCTKSK-EQSRSRQECIPECRQTCAKTKAQGMIGAPR 154          
BLAST of EWM23930.1 vs. NCBI_GenBank
Match: gi|224012970|ref|XP_002295137.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220969099|gb|EED87441.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 60.4622 bits (145), Expect = 7.197e-9
Identity = 41/106 (38.68%), Postives = 53/106 (50.00%), Query Frame = 0
Query:   30 LLVLLMVGLIGT-ATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAVDPARVGTKKDPAYEKCLSSCIYFCLKPKGAETRTRS 134
            +L LL+V LIGT A  +    T    R  SA    R + +AT        A S    F+ ++    A  VDPA  GTK DP ++ CLS C+Y C KPKG E R  +
Sbjct:    6 ILTLLIVALIGTTAAYSTPKSTSQSQRQTSATVVNRSTFLAT--------AASTCLAFLASSPPAFAKDVDPALKGTKADPEFQACLSQCVYECTKPKGMEQRNEA 103          
The following BLAST results are available for this feature:
BLAST of EWM23930.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585105215|gb|EWM23930.1|1.489e-111100.00hypothetical protein Naga_100082g13 [Nannochlorops... [more]
gi|585105216|gb|EWM23931.1|3.277e-63100.00hypothetical protein Naga_100082g13 [Nannochlorops... [more]
gi|1210528263|dbj|GAX12952.1|4.433e-2249.00hypothetical protein FisN_2Hh442 [Fistulifera sola... [more]
gi|1210525321|dbj|GAX15839.1|1.779e-2164.06hypothetical protein FisN_2Lh442 [Fistulifera sola... [more]
gi|397620955|gb|EJK66018.1|4.138e-2046.15hypothetical protein THAOC_13082 [Thalassiosira oc... [more]
gi|219117543|ref|XP_002179565.1|4.798e-1545.05predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|299469712|emb|CBN76566.1|7.421e-1441.49conserved unknown protein [Ectocarpus siliculosus][more]
gi|224012970|ref|XP_002295137.1|7.197e-938.68predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6761rna6761Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications