rna6761, rna6761 (mRNA) Nannochloropsis gaditana

Overview
Namerna6761
Unique Namerna6761
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2224
Alignment locationCM002469.1:442223..443331 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100082g13.9362.mrna
Orig protein idgnl|cribi|Naga_100082g13.9362
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:442223..443331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100082g13gene6536Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6761rna6761-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23930.1cds6745Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6761 ID=rna6761|Name=rna6761|organism=Nannochloropsis gaditana|type=mRNA|length=2224bp
CCGCGTCCGCGTCGCTTTCCTGCCCTGTCTACACGCGTACCTCTTTCATA
TGGCATTAAATTCCTTTTCCATTGATACAGCATCATCAGCTTTCCTGCTT
GGCTCGGTCACATGAGTGCGAAATTCAAGACATTTGTGACACGCCTGCAT
GGTGCTGTCCGAGCAGAGCGTCCGAATGAAGAGCGAATCCAGGAGGTATA
TCAGGAGTCAGAGGAGGTGGCGAAGGAGTTTAACAACGATCCTTGGCCCA
AGGCGGAGGAAGTGTCCGCGCTCGTGCAGGAGGATCGAGTCTTCCTGTTG
CTCTATACAGAGATGGCTTTTCAGGCTTTCTTTAAGAACAAAAATATGAA
GGCCACAATGGAGGACCGGGTAGGTTCCTGGCAGAACTACAGCGCGCTCT
TCACGGCCCTCATCCAGGACGAGGCGGGGGACGCCATGACGGAGGCAGCG
CGCGCTCACGGCGCGGAGGTTATGATCACGGGCAAGTGGGCCTTTGACAT
CATTTACGAGTTCGTCTACCAGTTCCAGGAGGCTTGCCAGTATCGGGCCT
CGGCCCTCCAGAGCGCAATAAACGAGTCTGAGCTCCAAACCGTGCTCGAT
CACAAGGACGTGTGGACGGTGGACAAAGTCTTCAACTTCCTCCACCAGCT
CGTCAAGGTCTCCAAGGTGCGGGAGGTACTGGAGGTTGCATCGCTCAGCA
AGGGTAGTGCGGAGGGCGAGGGTGGAGGTGCGGGAGCGGTGCCTTTGGTA
ACGTATCCGAGCAAGCTGCATTACCTTCTCGGGTACTTCGCGCTCGTGGG
CTTGAATCGCCTGGAGTGCTTGCTGGGAGACTTCCAGAATGCGCTGTCGG
TAGCTGAACCGGTCATGGAGGAGAGCCGCTCGGTCCATGCAGGTGCAGGC
CTGCTACTTTCCTCTAGCATCATAGCCCAGGTCTCGCTGCACTATCATAT
CGGTCTCAGTTATTTGATGATCCGCAAGTACCACGAGGCCATTAAAACCT
TTGTTTCGGTCCTGGACGTTTATTTTAAATACATGGAATCGGTCAAGCAG
CAGCAACGAGCACAGCAGCAACAGCAACAGCAACAGCAGGGCCAGCCTGT
TCAGCCGCCTCCCAAGAATGCCGATGACCTTGCGGCAGGCAAGCTGGTGG
ACAAAGTGGCAGCTATGCTCCTGATCGTACATCACCTTTGTCCTGGACAG
CACATTCCCGAGAATATTCGAGGACACTTAACGGGCGAGAAGATGAAAGA
CAAGCTACGTCATGTGCAGTCGGGCGACGTGGACGAGATCGTCACGCTCT
TTGTCGTGTCCGCGCCGAAGTTCATCAGCCCTGCCACAGATTATGACGCT
GCTGCATCCTCCATGGGAGTGGGAGGACAAGTCGGGACTGGGCGCGGCGG
GAGTGGCGGGCGGACGGGCACATACGGAGGTTTGCAGCGCATAGTCTTCG
CAGAAGAAGTGCGACAGATGCTAGAATTGCGGAAGCTGCGTGACTATTTG
CGTCTGTATTCCACCATCGGCTTAGAGAAGCTATCGGCTTTTACGGGGCA
AGAGCCGGAGAATATTCGTCGGGAACTTGTCCAGTACAAACATAAATTGC
TGCAGTTGGAAGCGAGCACTGGTAGCTCGGCTCAACAGAGCCTTGATTTC
CACTATTATCTGGATGGCGACATGGTGCATGTCGACGCCGGGGAGCATGA
GAATCGCCAGGAGGTGAGCAAGCATTTCCAACATGAAATTCGTAAGCTTG
AAAATTTAGCTAGGACCTTGCGGAAGTAATGGAGTCTGGCTGTACTGGAC
AAGGTCACGGCGAAGGCAAGTGCTGGAATGAAGGCTCGTTGAAAACTAAA
GGAAAAAAAATGCACAAACAAAATTAGAAATTTGCATCCAAAGGAAACGA
GGGAATTTGTAAATTCGACTGACTTGCTCGCTTTATTTCATCTTGTAATA
AAAGATAGCGTGCTTCTCAAATCAAGTACACTAACGGAAATATTCTTGCG
CAGGAACAAGAGACTGAGGCAATACCTTTCCGGGATTCAGCAAATTGTAC
GGATCTAAGGCGCGCTTGATCGCTGCCATCGTCTGCAAGGCGCCAGTCCC
AAACTCCTTCTCCAGGTACTTGATCTTTCCCACCCCAATGCCGTGCTCGC
CGGTGCATGTCCCGTCCAGCGCCAGCGCCGACTTTACCATGAAAGCGCTC
AGACCCTTGGCCTCCTCCACCTCC
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protein sequence of rna6761

>rna6761-protein ID=rna6761-protein|Name=rna6761|organism=Nannochloropsis gaditana|type=polypeptide|length=158bp
MYATAHTEPNFGDQSHAFGVIMFPGRRSFLLVLLMVGLIGTATLAFLLRT
GPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAVDP
ARVGTKKDPAYEKCLSSCIYFCLKPKGAETRTRSDCLPDCKAKCAQTDAQ
KLLGVPKK
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mRNA from alignment at CM002469.1:442223..443331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6761 ID=rna6761|Name=rna6761|organism=Nannochloropsis gaditana|type=mRNA|length=1109bp|location=Sequence derived from alignment at CM002469.1:442223..443331- (Nannochloropsis gaditana)
CAAAAGCTAGTGTCCTTGTCGGGCGGCTCCCCGCTAAACGGGGTTTAGAG
GTAGCGGCAAAGCGATACGAGCCTCCTCTCGAAGGCGATGAGGTCGTCGA
AGCCGGGGCACGGGTGATGGACAAGTGCACGCCTGCGCACGCACGGCACT
CTATACCGATGGTGCTGATCATATGTACGCCACCGCGCATACAGAGCCTA
ATTTCGGGGATCAGAGCCACGCTTTTGGAGTCATCATGTTTCCAGGTAAT
GGCAGGGTCTGGCACCAACGGTCGCCACCACATCCTCCCGTGCATCCTGT
TTTCCAAGGCCCAGGTGCTTTACCGTCTGCATCATTGTCATACTGAACAC
CCTTTATCCTTGGCATTAGGTCGTCGTTCGTTTCTGTTGGTCCTGCTCAT
GGTAGGACTGATTGGTACGGCCACGCTGGCCTTCCTGCTGCGGACGGGAC
CTCCTTCACGATCATGCAGTGCACTCGATGCGGAGAGAAGAAGTGAAATG
GCGACACGTCGTGTCGGAGTGCAGCAAATTGCTTTCAGTTTGTTGACACC
ATTCGTCTTGACGGCAGGTGCAGATGTCGCTGCAGCTGTGGTGAGACCTC
TTTCTTGCGTTTCGTATTATTCAAGAATTTCATCTTAATTATTCATTTTT
TCATTCCTTTACTCTACATTATCGGTGAACTTTCAATGTGGTATTATTTT
CTTCCCTTCAAACGCCCTTGATTTATCATATTCTACACATTTGAATGTGT
GCATTTCAAGACAGAAAACCTCTTTCGCCGTCCGCCCCTCATTGAACACA
TTTTCTTTTCACATTTAATACTGCACTACCGTAGGATCCAGCACGGGTGG
GTACCAAAAAGGATCCTGCGTACGAGAAATGCTTGAGCTCTTGCATTTAC
TTTTGCCTGAAGCCGAAGGGTGCCGAGACGAGGACTCGCTCGGACTGCTT
GCCAGACTGCAAGGCCAAGTGCGCTCAAACGGATGCGCAGAAGCTACTGG
GAGTTCCAAAGAAATGAGCGCTGTAGTATTCCATCGCGGAAATGCATAAG
CTCTCCACCTTCATAAGCCTGAAATTAAAAGAACAACGATACGTGAAAAT
CAGAACAAC
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Coding sequence (CDS) from alignment at CM002469.1:442223..443331-

>rna6761 ID=rna6761|Name=rna6761|organism=Nannochloropsis gaditana|type=CDS|length=1431bp|location=Sequence derived from alignment at CM002469.1:442223..443331- (Nannochloropsis gaditana)
GATCCAGCACGGGTGGGTACCAAAAAGGATCCTGCGTACGAGAAATGCTT
GAGCTCTTGCATTTACTTTTGCCTGAAGCCGAAGGGTGCCGAGACGAGGA
CTCGCTCGGACTGCTTGCCAGACTGCAAGGCCAAGTGCGCTCAAACGGAT
GCGCAGAAGCTACTGGGAGTTCCAAAGAAATGAGTCGTCGTTCGTTTCTG
TTGGTCCTGCTCATGGTAGGACTGATTGGTACGGCCACGCTGGCCTTCCT
GCTGCGGACGGGACCTCCTTCACGATCATGCAGTGCACTCGATGCGGAGA
GAAGAAGTGAAATGGCGACACGTCGTGTCGGAGTGCAGCAAATTGCTTTC
AGTTTGTTGACACCATTCGTCTTGACGGCAGGTGCAGATGTCGCTGCAGC
TGTGATGTACGCCACCGCGCATACAGAGCCTAATTTCGGGGATCAGAGCC
ACGCTTTTGGAGTCATCATGTTTCCAGGATCCAGCACGGGTGGGTACCAA
AAAGGATCCTGCGTACGAGAAATGCTTGAGCTCTTGCATTTACTTTTGCC
TGAAGCCGAAGGGTGCCGAGACGAGGACTCGCTCGGACTGCTTGCCAGAC
TGCAAGGCCAAGTGCGCTCAAACGGATGCGCAGAAGCTACTGGGAGTTCC
AAAGAAATGAGTCGTCGTTCGTTTCTGTTGGTCCTGCTCATGGTAGGACT
GATTGGTACGGCCACGCTGGCCTTCCTGCTGCGGACGGGACCTCCTTCAC
GATCATGCAGTGCACTCGATGCGGAGAGAAGAAGTGAAATGGCGACACGT
CGTGTCGGAGTGCAGCAAATTGCTTTCAGTTTGTTGACACCATTCGTCTT
GACGGCAGGTGCAGATGTCGCTGCAGCTGTGATGTACGCCACCGCGCATA
CAGAGCCTAATTTCGGGGATCAGAGCCACGCTTTTGGAGTCATCATGTTT
CCAGGATCCAGCACGGGTGGGTACCAAAAAGGATCCTGCGTACGAGAAAT
GCTTGAGCTCTTGCATTTACTTTTGCCTGAAGCCGAAGGGTGCCGAGACG
AGGACTCGCTCGGACTGCTTGCCAGACTGCAAGGCCAAGTGCGCTCAAAC
GGATGCGCAGAAGCTACTGGGAGTTCCAAAGAAATGAGTCGTCGTTCGTT
TCTGTTGGTCCTGCTCATGGTAGGACTGATTGGTACGGCCACGCTGGCCT
TCCTGCTGCGGACGGGACCTCCTTCACGATCATGCAGTGCACTCGATGCG
GAGAGAAGAAGTGAAATGGCGACACGTCGTGTCGGAGTGCAGCAAATTGC
TTTCAGTTTGTTGACACCATTCGTCTTGACGGCAGGTGCAGATGTCGCTG
CAGCTGTGATGTACGCCACCGCGCATACAGAGCCTAATTTCGGGGATCAG
AGCCACGCTTTTGGAGTCATCATGTTTCCAG
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Synonyms
Publications