EWM23930.1, cds6745 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23930.1 vs. NCBI_GenBank
Match: gi|585105215|gb|EWM23930.1| (hypothetical protein Naga_100082g13 [Nannochloropsis gaditana]) HSP 1 Score: 322.398 bits (825), Expect = 1.489e-111 Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0 Query: 1 MYATAHTEPNFGDQSHAFGVIMFPGRRSFLLVLLMVGLIGTATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAVDPARVGTKKDPAYEKCLSSCIYFCLKPKGAETRTRSDCLPDCKAKCAQTDAQKLLGVPKK 158 MYATAHTEPNFGDQSHAFGVIMFPGRRSFLLVLLMVGLIGTATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAVDPARVGTKKDPAYEKCLSSCIYFCLKPKGAETRTRSDCLPDCKAKCAQTDAQKLLGVPKK Sbjct: 1 MYATAHTEPNFGDQSHAFGVIMFPGRRSFLLVLLMVGLIGTATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAVDPARVGTKKDPAYEKCLSSCIYFCLKPKGAETRTRSDCLPDCKAKCAQTDAQKLLGVPKK 158
BLAST of EWM23930.1 vs. NCBI_GenBank
Match: gi|585105216|gb|EWM23931.1| (hypothetical protein Naga_100082g13 [Nannochloropsis gaditana]) HSP 1 Score: 198.364 bits (503), Expect = 3.277e-63 Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 Query: 1 MYATAHTEPNFGDQSHAFGVIMFPGRRSFLLVLLMVGLIGTATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAV 98 MYATAHTEPNFGDQSHAFGVIMFPGRRSFLLVLLMVGLIGTATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAV Sbjct: 1 MYATAHTEPNFGDQSHAFGVIMFPGRRSFLLVLLMVGLIGTATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAV 98
BLAST of EWM23930.1 vs. NCBI_GenBank
Match: gi|1210528263|dbj|GAX12952.1| (hypothetical protein FisN_2Hh442 [Fistulifera solaris]) HSP 1 Score: 93.9745 bits (232), Expect = 4.433e-22 Identity = 49/100 (49.00%), Postives = 64/100 (64.00%), Query Frame = 0 Query: 59 ALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAVDPARVGTKKDPAYEKCLSSCIYFCLKPKGAETRTRSDCLPDCKAKCAQTDAQKLLGVPKK 158 +L + S +TR +Q IA + T A A VDP+ GTKKDP YEKCLS C+Y C KPKG+E ++R +CLP+CK KCA+T AQ +LG PK+ Sbjct: 13 SLSVQAWSSSSTRAQFLQHIAAATAT----VALPAYAKEVDPSVKGTKKDPNYEKCLSVCMYDCTKPKGSEQKSRQECLPECKQKCAKTKAQLMLGTPKE 108
BLAST of EWM23930.1 vs. NCBI_GenBank
Match: gi|1210525321|dbj|GAX15839.1| (hypothetical protein FisN_2Lh442 [Fistulifera solaris]) HSP 1 Score: 92.4337 bits (228), Expect = 1.779e-21 Identity = 41/64 (64.06%), Postives = 50/64 (78.12%), Query Frame = 0 Query: 95 AAAVDPARVGTKKDPAYEKCLSSCIYFCLKPKGAETRTRSDCLPDCKAKCAQTDAQKLLGVPKK 158 A VDPA GTKKDP YEKCLS C+Y C KPKG+E ++R +CLP+CK KCA+T AQ +LG PK+ Sbjct: 47 AKEVDPAIKGTKKDPNYEKCLSVCMYDCTKPKGSEQKSRQECLPECKQKCAKTKAQLMLGTPKE 110
BLAST of EWM23930.1 vs. NCBI_GenBank
Match: gi|397620955|gb|EJK66018.1| (hypothetical protein THAOC_13082 [Thalassiosira oceanica]) HSP 1 Score: 92.4337 bits (228), Expect = 4.138e-20 Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 0 Query: 68 MATRRVGVQQIAFSLLTPFVLTAGADVAAAVDPARVGTKKDPAYEKCLSSCIYFCLKPKGAETRTRSDCLPDCKAKCAQTDAQKLLGVPKK 158 ++ R ++ I F+L + +A +DPA GTK DP Y+ CLS+CIY C KPKG E +TR++CLP+CK+KCA T Q L G PK Sbjct: 37 VSNRGAFLRHIGAGCAATFLLPTQSAIAKEIDPALKGTKADPEYQSCLSTCIYECTKPKGVEQKTRAECLPECKSKCATTKQQLLTGAPKN 127
BLAST of EWM23930.1 vs. NCBI_GenBank
Match: gi|219117543|ref|XP_002179565.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408618|gb|EEC48551.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 76.6406 bits (187), Expect = 4.798e-15 Identity = 41/91 (45.05%), Postives = 53/91 (58.24%), Query Frame = 0 Query: 68 MATRRVGVQQIAFSLLTPFVLTAGADVAAAVDPARVGTKKDPAYEKCLSSCIYFCLKPKGAETRTRSDCLPDCKAKCAQTDAQKLLGVPKK 158 + +RRV +A + P A DV ++V GTKKDP YE CLS C+Y C KPKG E ++R+ CLP+CK CA Q +LG P K Sbjct: 44 LQSRRVFGSVLALAWTIP-TTAAAKDVDSSVK----GTKKDPTYEACLSKCVYECTKPKGTEQKSRAVCLPECKQTCATNKEQLMLGQPLK 129
BLAST of EWM23930.1 vs. NCBI_GenBank
Match: gi|299469712|emb|CBN76566.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 74.3294 bits (181), Expect = 7.421e-14 Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 0 Query: 66 SEMATRRVGVQQIAF--SLLTPFVLTAGADVAAAVDPARVGTKKDPAYEKCLSSCIYFCLKPKGAETRTRSDCLPDCKAKCAQTDAQKLLGVPK 157 +E+ T R V F + ++ F + AD A DPA GTK DP + CLS CIYFC K K ++R+R +C+P+C+ CA+T AQ ++G P+ Sbjct: 64 AELPTSRKDVLGAVFGAAAMSSFAFVSAAD--AKDDPALKGTKADPEFVTCLSDCIYFCTKSK-EQSRSRQECIPECRQTCAKTKAQGMIGAPR 154
BLAST of EWM23930.1 vs. NCBI_GenBank
Match: gi|224012970|ref|XP_002295137.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220969099|gb|EED87441.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 60.4622 bits (145), Expect = 7.197e-9 Identity = 41/106 (38.68%), Postives = 53/106 (50.00%), Query Frame = 0 Query: 30 LLVLLMVGLIGT-ATLAFLLRTGPPSRSCSALDAERRSEMATRRVGVQQIAFSLLTPFVLTAGADVAAAVDPARVGTKKDPAYEKCLSSCIYFCLKPKGAETRTRS 134 +L LL+V LIGT A + T R SA R + +AT A S F+ ++ A VDPA GTK DP ++ CLS C+Y C KPKG E R + Sbjct: 6 ILTLLIVALIGTTAAYSTPKSTSQSQRQTSATVVNRSTFLAT--------AASTCLAFLASSPPAFAKDVDPALKGTKADPEFQACLSQCVYECTKPKGMEQRNEA 103 The following BLAST results are available for this feature:
BLAST of EWM23930.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 8
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|