rna6758, rna6758 (mRNA) Nannochloropsis gaditana

Overview
Namerna6758
Unique Namerna6758
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3128
Alignment locationCM002469.1:435312..436532 -

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Properties
Property NameValue
Producturidine kinase
Orig transcript idgnl|cribi|Naga_100082g17.9361.mrna
Orig protein idgnl|cribi|Naga_100082g17.9361
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:435312..436532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100082g17gene6533Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23929.1cds6742Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6758rna6758-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6758 ID=rna6758|Name=rna6758|organism=Nannochloropsis gaditana|type=mRNA|length=3128bp
AGGTTAAGGACTCGCTCCTCTCCCATGCCCATACCCACGTCGAGCAGTGA
CTTTCAGCAACCCGCGTGTGCTGCTGCCAGCTCGTGGCTAGATCGAACGC
CTGCCTAAGACATGTGATGCCCATGTTATGTGCCTCGTGAGCCGTAATCG
GCCCCTCCTCTGGCTACTGTGACTGACTTTGCGAATGATCTTACCCCACG
TCATGAAAGATGAAGGGGGCGGCCTCCCAAACTTCAATTTTTCCTGATAA
ACCGGAAGAGAGGGACAAGACAGGACGTGCCCAGACACGTTATAAAACTC
ATCCATCTCGCAGCAGTGGGCTCAAAATCAAGGATGGCTCCTCATCGCCA
CCGAGCTGGTTTCAGGTCGGGACCCTACCCTCGCTCCTACTTTTTGATGC
GGCTGTCATGGTGACATTTTGGGTGGCGAGTGGGGATGGTTTTCTCTTCA
GCTATGATGCCCCAGGCAGTGTCATATGGGATCTGTGCATTGTTGGATTG
CTTCGCATACTTTTGCTGCTTGGCGTAGCTATTGCCTTCGATGCATTTGC
CCTCAGCCCTCAGAGGCGAAGGGTGAGACGACCTGTGAAGACGGACAGCT
TCTTGACGAGGGCCACGGGAGCCGGTGTGTCTCCGAGCAACACCGCTCAC
TTTACAACCACTTCTGTAGCGAGAGATCTGAGCCTCAGAGAGGAAGCAAA
TTCGGCTACGCAGCCATCTCCCATACGGCGCATGGAGCGCGTCGGTCGCA
GTGCCACTCTGGTCCTCACCCTAATGAGCTACTTCATTCTCATGGCCAAA
TGCCTGATGCGGCTTTTAATGGGCATTGGATTCTCAGATTCCATGGCCTG
CTTTTGGGGTTGCGTAGCTGCAAGTGCTATTTTAGGCTGTGTAGATTACA
TTGTTTTGAAAAGACACTTGCGGTATGTGAAACGTTGGGCATACCAGCGG
CATCGCGAGGCTTTGGTTCGGAAAAAAGGGACGTTGCGTGAGTCGCTCTT
ATTGTCGACAGTCTCGGGCAATGGAAGCGTGTGTCTGGGAAGTGAAGGTC
CGGAGGGAGAGGATGCAGAGAGGACCGCGGGGGGGGAGGAATTGGAGGAC
GAGAGCGAGGAAGAACGCGAGGACCTCAAGGAGGCGGCGCATTTGAGTGA
AGTATGGGCGAGTCTGCGCGGCCTAGACGACGCCGAGGCGGCAGAGGACG
CGACAAGAGGGCGTGGAGGCAAGGACAAGGGCCATGCTACGTACAAGGAC
CTTCTTTCCCTGACGCGCGACGACTGGCATCTGATCTCTTCGGCCTTCGC
GTTCTTGCTGGGCGCGGCAATCGGCCAAGTCTTAATCCCTCACTACACCG
GCAAAGCCATCGACGCAATTGTAAGCGAGGAGGGTGCAGCAGCTTTTCAG
CATGCCATGGTCATGCTGGTGCTCTGTGCTGCGGTCTGTGGCGCCTGCAC
GGGCTTGCGGGGGGCAATCTTCACAATAGTAGGCGCACGCGTGAATAGGC
GCATCCGAGACATGCTCTTTCAGAGTCTGATCCGTCAAGAGGTGGGCTTT
TTCGACACGGCAAAGACGGGCGATCTCTCTTCTCGCCTGAGTTCGGACTG
CACCAAAGTGGGCGACCAGGTCTCTCTAAACATCAACTTCTTCCTCAGGT
CTCTGGTGCAAGCGGTAGGTACGCTAATCTTCATGTTCATTCAGAGTTGG
AAGCTCAGCCTGGTGGCCTTCGTCTCCGTGCCTGTCATCGTCATCATGAG
TAAGATATACGGTCAGTATATAAGGAAGCTATCAAAAGCTACTCAAGAGC
GGCTGGCCCATGCCAACTCCATCGCAGAGGAGTGTCTCTCCACGATGCCA
ACGGTGCGCAGTTTTGCTGGCGGTCCGGCACAGGGGCGGCTGTATCGTGG
CAAGTTGGACGAATATTATGACCTGAATAAACAAGAGGCCCGTGCTTATG
GTGCATACGCGGTTGCTACAACGCTCTTGCCGAACCTAGTGACCGCCCTT
GTCCTCTTCTATGGGGGCCAGTTGGTGCTCAACCAGGACGGCCTTACCAG
CGGGCAGCTTGTCTCCTTCCTTCTGCTTCTAGGTTCGCTTTCGGAAGGCT
TCAGTAACATGGGATCAATCTTTAGCTCTATCACTCAGGCGCTGGGGGCT
GCTGACAAGGTCTTTGAGCTTATACGCCGTCCACCCCAAAGCACTCCTTT
GCCTGAGCCGCCATTGGCACCCGCATTTTGTTCTGGTAAAGTGGAATTGC
GTGATGTCACGTTCCGGTACCCTGCGCGCCCGGCGCGTCCTGTCTTAAAC
AAAATGAACATGCTAGCAGAGCCAGGCAAAGTTGTTGCCCTCGTCGGGCC
CAGTGGCGGTGGCAAGTCCTCGTGCGTCGCCCTCTTGGAGAACTTCTACG
AGCCAGAAAGCGGCATGGTCTTATTAGACGGGCGTAAGGTGCAAGAGTAC
GACCCGCACTGGTACCATCGCAACGTTTCGATTGTAAGTCAAGAGCCCGT
GCTCTATGCGCGCTCAATCCGGCAAAATATTCTCTTTGGTCTGGAAGGGG
AGCCGGACGAGCCCTCCGAAGGGGAGATCATCGAGGCTGCTGTCCTAGCA
GGTGCGCATGACTTTATCCTGGGACTACAATCGGGTTATGACACGGAGGT
TGGTGAACGCGGCGTTTGTCTCAGCGGAGGGCAAAAGCAGCGTATAGCCA
TTGCGCGGGCGCTTTGTCGTCGTCCACGCGTCCTGCTCCTGGACGAGGCA
ACGTCGGCCTTGGATTCTGACTCCGAGAATTTAGTCCAACAATCCATCGA
CAGGATGATTTCGCACGGAAATATGACGGTGATTATTATTGCACACAGGC
TAAGCACAATTGTCAACGCAGATTCCATCTTAGTCGTCCGGGACGGGAGG
GTAGTAGAACAAGGAACCCACACGGAGCTCTTGGGGAAAGTGGGAGGGAT
GTATTCTCAACTTGTATGCAAGCAGGTTGATGCATTGGAAACTGCAAATA
CCATCTGCAACGAGCAGGAAAAGTCTTGAAATTTTGTGCCTTGGAGACGC
AGGGATGGACATGCGCGGGTTAGGGCGGGCTCTCTCCATGTTTGTGTATT
AATAGTGTAGACATGTTGTTCACACCAT
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protein sequence of rna6758

>rna6758-protein ID=rna6758-protein|Name=rna6758|organism=Nannochloropsis gaditana|type=polypeptide|length=382bp
MSPGSSAKPLELLFVFLLGAAVAWSLLAGRSSSRGVTHKRKAHDPTCRQE
DEEDDVQEVKSGFLAYLPSPVGPLLPLRHGVSATPLEEPQGLGKETMGPL
LESLEQPVKAPRQSTSGPLTLGVAGGSGSGKTTFARALYEALGEEHVTYI
THDSYYKDLSHLPFDERKKSNFDHPNALDTALLVEHLRALKRGHTVEVPE
YDFATHNRLKRTCKAEPRPVILLEGILIFADRSLVQELAIKVFVDTESDL
RLIRRIHRDVKERGRSLESIVDQYVKTVRPMHLEFVEPSKREADVIIPLG
MNQVALDMFLSRLQAEVGEHLGHLGSSTSPDKDSQSPKRKAYIALGKQGS
LSLGNNMGPARTRGESEAKNANLSHLKVFGSK
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mRNA from alignment at CM002469.1:435312..436532-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6758 ID=rna6758|Name=rna6758|organism=Nannochloropsis gaditana|type=mRNA|length=1221bp|location=Sequence derived from alignment at CM002469.1:435312..436532- (Nannochloropsis gaditana)
GCGCAGGCCGGACATAACGCTACATGTAACTTACTAATTGAATGCTTAAC
ACTTCTATGAATCCTGTTCAGCATGTCACCAGGGTCCTCCGCCAAGCCTC
TCGAGCTGCTCTTCGTCTTCCTTTTAGGTGCAGCTGTAGCCTGGTCTTTG
CTGGCGGGTCGTTCGTCGTCACGAGGGGTAACACACAAGCGAAAAGCACA
TGACCCTACTTGTCGGCAAGAAGATGAAGAGGACGATGTCCAGGAGGTGA
AGTCGGGGTTTTTGGCTTATCTTCCATCCCCTGTGGGCCCATTGCTGCCC
CTGAGACATGGCGTCAGTGCCACGCCACTTGAAGAGCCCCAAGGACTAGG
CAAAGAGACTATGGGACCGTTACTAGAAAGCTTAGAGCAACCTGTGAAGG
CGCCGCGGCAGTCGACTTCGGGTCCTTTGACGTTGGGCGTGGCCGGCGGT
TCGGGGTCAGGCAAGACGACATTCGCTCGAGCCTTGTACGAGGCCCTTGG
CGAGGAGCATGTCACCTACATCACGCACGACTCATACTATAAAGATTTGA
GTCATCTCCCTTTCGACGAGCGTAAGAAATCGAATTTCGACCATCCCAAC
GCCCTGGACACCGCTCTGTTAGTTGAGCATCTGCGGGCACTGAAAAGGGG
CCACACAGTCGAAGTTCCTGAGTACGACTTCGCGACCCACAATCGTCTTA
AGCGGACCTGCAAGGCAGAGCCTCGGCCCGTCATTTTGCTTGAGGGTATT
CTTATTTTTGCGGACCGCTCTCTCGTCCAAGAGCTGGCCATTAAGGTCTT
TGTGGACACAGAGTCGGACCTGCGACTGATCCGGCGCATCCATCGGGACG
TGAAGGAACGTGGACGGAGTCTGGAATCCATAGTCGATCAATACGTAAAG
ACAGTGCGGCCCATGCACTTGGAGTTTGTGGAGCCTTCGAAACGGGAGGC
GGATGTCATCATCCCACTGGGTATGAACCAAGTTGCCTTAGACATGTTTC
TTAGCCGCCTTCAGGCCGAGGTAGGGGAACACTTGGGCCATCTCGGGTCT
TCAACTTCGCCTGATAAGGATTCTCAAAGCCCCAAAAGAAAAGCTTACAT
CGCATTAGGAAAGCAAGGTTCGTTATCGCTCGGGAACAACATGGGTCCGG
CAAGGACAAGAGGGGAAAGTGAGGCCAAAAATGCAAATTTAAGTCATTTG
AAAGTATTTGGATCCAAATAA
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Coding sequence (CDS) from alignment at CM002469.1:435312..436532-

>rna6758 ID=rna6758|Name=rna6758|organism=Nannochloropsis gaditana|type=CDS|length=1149bp|location=Sequence derived from alignment at CM002469.1:435312..436532- (Nannochloropsis gaditana)
ATGTCACCAGGGTCCTCCGCCAAGCCTCTCGAGCTGCTCTTCGTCTTCCT
TTTAGGTGCAGCTGTAGCCTGGTCTTTGCTGGCGGGTCGTTCGTCGTCAC
GAGGGGTAACACACAAGCGAAAAGCACATGACCCTACTTGTCGGCAAGAA
GATGAAGAGGACGATGTCCAGGAGGTGAAGTCGGGGTTTTTGGCTTATCT
TCCATCCCCTGTGGGCCCATTGCTGCCCCTGAGACATGGCGTCAGTGCCA
CGCCACTTGAAGAGCCCCAAGGACTAGGCAAAGAGACTATGGGACCGTTA
CTAGAAAGCTTAGAGCAACCTGTGAAGGCGCCGCGGCAGTCGACTTCGGG
TCCTTTGACGTTGGGCGTGGCCGGCGGTTCGGGGTCAGGCAAGACGACAT
TCGCTCGAGCCTTGTACGAGGCCCTTGGCGAGGAGCATGTCACCTACATC
ACGCACGACTCATACTATAAAGATTTGAGTCATCTCCCTTTCGACGAGCG
TAAGAAATCGAATTTCGACCATCCCAACGCCCTGGACACCGCTCTGTTAG
TTGAGCATCTGCGGGCACTGAAAAGGGGCCACACAGTCGAAGTTCCTGAG
TACGACTTCGCGACCCACAATCGTCTTAAGCGGACCTGCAAGGCAGAGCC
TCGGCCCGTCATTTTGCTTGAGGGTATTCTTATTTTTGCGGACCGCTCTC
TCGTCCAAGAGCTGGCCATTAAGGTCTTTGTGGACACAGAGTCGGACCTG
CGACTGATCCGGCGCATCCATCGGGACGTGAAGGAACGTGGACGGAGTCT
GGAATCCATAGTCGATCAATACGTAAAGACAGTGCGGCCCATGCACTTGG
AGTTTGTGGAGCCTTCGAAACGGGAGGCGGATGTCATCATCCCACTGGGT
ATGAACCAAGTTGCCTTAGACATGTTTCTTAGCCGCCTTCAGGCCGAGGT
AGGGGAACACTTGGGCCATCTCGGGTCTTCAACTTCGCCTGATAAGGATT
CTCAAAGCCCCAAAAGAAAAGCTTACATCGCATTAGGAAAGCAAGGTTCG
TTATCGCTCGGGAACAACATGGGTCCGGCAAGGACAAGAGGGGAAAGTGA
GGCCAAAAATGCAAATTTAAGTCATTTGAAAGTATTTGGATCCAAATAA
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Synonyms
Publications