EWM23929.1, cds6742 (CDS) Nannochloropsis gaditana

Overview
NameEWM23929.1
Unique Namecds6742
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:435312..436460 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23929.1
Producturidine kinase
Orig transcript idgnl|cribi|Naga_100082g17.9361.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:435312..436460 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0008152metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0004849uridine kinase activity
GO:0016773phosphotransferase activity, alcohol group as acceptor
GO:0016301kinase activity
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR026008Uridine_kinase_
IPR006083PRK/URK
IPR027417P-loop_NTPase
IPR000764Uridine_kinase-like
Homology
BLAST of EWM23929.1 vs. NCBI_GenBank
Match: gi|585105214|gb|EWM23929.1| (uridine kinase [Nannochloropsis gaditana])

HSP 1 Score: 776.548 bits (2004), Expect = 0.000e+0
Identity = 382/382 (100.00%), Postives = 382/382 (100.00%), Query Frame = 0
Query:    1 MSPGSSAKPLELLFVFLLGAAVAWSLLAGRSSSRGVTHKRKAHDPTCRQEDEEDDVQEVKSGFLAYLPSPVGPLLPLRHGVSATPLEEPQGLGKETMGPLLESLEQPVKAPRQSTSGPLTLGVAGGSGSGKTTFARALYEALGEEHVTYITHDSYYKDLSHLPFDERKKSNFDHPNALDTALLVEHLRALKRGHTVEVPEYDFATHNRLKRTCKAEPRPVILLEGILIFADRSLVQELAIKVFVDTESDLRLIRRIHRDVKERGRSLESIVDQYVKTVRPMHLEFVEPSKREADVIIPLGMNQVALDMFLSRLQAEVGEHLGHLGSSTSPDKDSQSPKRKAYIALGKQGSLSLGNNMGPARTRGESEAKNANLSHLKVFGSK 382
            MSPGSSAKPLELLFVFLLGAAVAWSLLAGRSSSRGVTHKRKAHDPTCRQEDEEDDVQEVKSGFLAYLPSPVGPLLPLRHGVSATPLEEPQGLGKETMGPLLESLEQPVKAPRQSTSGPLTLGVAGGSGSGKTTFARALYEALGEEHVTYITHDSYYKDLSHLPFDERKKSNFDHPNALDTALLVEHLRALKRGHTVEVPEYDFATHNRLKRTCKAEPRPVILLEGILIFADRSLVQELAIKVFVDTESDLRLIRRIHRDVKERGRSLESIVDQYVKTVRPMHLEFVEPSKREADVIIPLGMNQVALDMFLSRLQAEVGEHLGHLGSSTSPDKDSQSPKRKAYIALGKQGSLSLGNNMGPARTRGESEAKNANLSHLKVFGSK
Sbjct:    1 MSPGSSAKPLELLFVFLLGAAVAWSLLAGRSSSRGVTHKRKAHDPTCRQEDEEDDVQEVKSGFLAYLPSPVGPLLPLRHGVSATPLEEPQGLGKETMGPLLESLEQPVKAPRQSTSGPLTLGVAGGSGSGKTTFARALYEALGEEHVTYITHDSYYKDLSHLPFDERKKSNFDHPNALDTALLVEHLRALKRGHTVEVPEYDFATHNRLKRTCKAEPRPVILLEGILIFADRSLVQELAIKVFVDTESDLRLIRRIHRDVKERGRSLESIVDQYVKTVRPMHLEFVEPSKREADVIIPLGMNQVALDMFLSRLQAEVGEHLGHLGSSTSPDKDSQSPKRKAYIALGKQGSLSLGNNMGPARTRGESEAKNANLSHLKVFGSK 382          
BLAST of EWM23929.1 vs. NCBI_GenBank
Match: gi|647304615|ref|WP_025745951.1| (uridine kinase [bacterium JKG1])

HSP 1 Score: 269.24 bits (687), Expect = 5.464e-86
Identity = 123/206 (59.71%), Postives = 160/206 (77.67%), Query Frame = 0
Query:  116 SGPLTLGVAGGSGSGKTTFARALYEALGEEHVTYITHDSYYKDLSHLPFDERKKSNFDHPNALDTALLVEHLRALKRGHTVEVPEYDFATHNRLKRTCKAEPRPVILLEGILIFADRSLVQELAIKVFVDTESDLRLIRRIHRDVKERGRSLESIVDQYVKTVRPMHLEFVEPSKREADVIIPL-GMNQVALDMFLSRLQAEVGEH 320
            S P+ +GVAGG+GSGKTT +RA+ + +G   + Y+ HDSYY+DLSHL  +ER + NFDHP+ALD ALL+EHL AL  G  V VP YDF  HNR   T    P+PV+LLEGILIF DR+L + + IK++VDT++DLR IRRI RD+KERGRSLES++DQY++TVRPMHLEFVEPSKR AD+IIP  G+N +A+DM ++R++  +  H
Sbjct:    2 SKPIIIGVAGGTGSGKTTVSRAILQRVGPSRIAYLQHDSYYRDLSHLTLEERAQVNFDHPDALDNALLIEHLDALAAGRAVAVPIYDFTRHNRKGETRTVHPQPVVLLEGILIFVDRALRERMDIKIYVDTDADLRFIRRIQRDIKERGRSLESVIDQYLRTVRPMHLEFVEPSKRYADIIIPRGGLNSIAIDMVVARIEGMLAAH 207          
BLAST of EWM23929.1 vs. NCBI_GenBank
Match: gi|1173935822|gb|OQR86877.1| (uridine kinase [Achlya hypogyna])

HSP 1 Score: 263.462 bits (672), Expect = 5.729e-83
Identity = 122/215 (56.74%), Postives = 168/215 (78.14%), Query Frame = 0
Query:  108 VKAPRQSTSGP---LTLGVAGGSGSGKTTFARALYEALGEEHVTYITHDSYYKDLSHLPFDERKKSNFDHPNALDTALLVEHLRALKRGHTVEVPEYDFATHNRLKRTCKAEPRPVILLEGILIFADRSLVQELAIKVFVDTESDLRLIRRIHRDVKERGRSLESIVDQYVKTVRPMHLEFVEPSKREADVIIPLGMNQVALDMFLSRLQAEVGE 319
            ++ PR+ + G    L +GV GG+GSGKTT +RA+ EA+GE++V+Y++HD YY+D+S+   ++R + NFDHP++L+T+LLV HL AL+ G TVEVP YDFATH+R   T    PR VIL+EGIL+F D +LV  + IKVFV+T SD+R IRR+ RD+ ERGR+ ES++DQY+KTVRPMHL FVEPSKR AD+I+P+G+N VALD+ +SRL++   E
Sbjct:   66 IQIPRRGSVGDEDILVIGVCGGTGSGKTTLSRAIIEAIGEDNVSYLSHDYYYRDISNRTLEQRAQHNFDHPDSLETSLLVRHLEALREGITVEVPMYDFATHSRCTTTQTMVPRRVILVEGILLFTDPALVALMDIKVFVETPSDIRFIRRLRRDIAERGRTAESVIDQYLKTVRPMHLTFVEPSKRVADIIVPVGVNAVALDLIISRLRSYCPE 280          
BLAST of EWM23929.1 vs. NCBI_GenBank
Match: gi|669145996|ref|XP_008608560.1| (hypothetical protein SDRG_04660 [Saprolegnia diclina VS20] >gi|530739991|gb|EQC38233.1| hypothetical protein SDRG_04660 [Saprolegnia diclina VS20])

HSP 1 Score: 263.462 bits (672), Expect = 6.049e-83
Identity = 123/215 (57.21%), Postives = 166/215 (77.21%), Query Frame = 0
Query:  108 VKAPRQSTSGP---LTLGVAGGSGSGKTTFARALYEALGEEHVTYITHDSYYKDLSHLPFDERKKSNFDHPNALDTALLVEHLRALKRGHTVEVPEYDFATHNRLKRTCKAEPRPVILLEGILIFADRSLVQELAIKVFVDTESDLRLIRRIHRDVKERGRSLESIVDQYVKTVRPMHLEFVEPSKREADVIIPLGMNQVALDMFLSRLQAEVGE 319
            +K PR+ + GP   L +GV GG+GSGKTT +RA+ E +GE +V+Y++HD YY+D+S+   ++R + NFDHP++L+T+LLV HL AL+ G TVEVP YDFATH+R   T    PR VIL+EGIL+F D  LV  + IKVFV+T SD+R IRR+ RD+ ERGR+ ES++DQY+KTVRPMHL FVEPSKR AD+I+P+G+N VALD+ +SRL++   E
Sbjct:   64 IKIPRRGSVGPNDILVIGVCGGTGSGKTTLSRAIMEEIGEANVSYLSHDYYYRDISNRTLEQRAQHNFDHPDSLETSLLVRHLEALRDGVTVEVPMYDFATHSRCADTQTMVPRRVILVEGILLFTDPDLVALMDIKVFVETPSDIRFIRRLRRDIAERGRTAESVIDQYLKTVRPMHLTFVEPSKRVADIIVPVGVNAVALDLIISRLRSYCPE 278          
BLAST of EWM23929.1 vs. NCBI_GenBank
Match: gi|813177445|ref|XP_012205192.1| (hypothetical protein SPRG_10843 [Saprolegnia parasitica CBS 223.65] >gi|641529908|gb|KDO24056.1| hypothetical protein SPRG_10843 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 261.151 bits (666), Expect = 5.465e-82
Identity = 122/215 (56.74%), Postives = 165/215 (76.74%), Query Frame = 0
Query:  108 VKAPRQSTSGP---LTLGVAGGSGSGKTTFARALYEALGEEHVTYITHDSYYKDLSHLPFDERKKSNFDHPNALDTALLVEHLRALKRGHTVEVPEYDFATHNRLKRTCKAEPRPVILLEGILIFADRSLVQELAIKVFVDTESDLRLIRRIHRDVKERGRSLESIVDQYVKTVRPMHLEFVEPSKREADVIIPLGMNQVALDMFLSRLQAEVGE 319
            +K PR+ + GP   L +GV GG+GSGKTT +RA+ E +GE +V+Y++HD YY+D+S+   ++R + NFDHP++L+T+LLV HL AL+ G TVEVP YD ATH+R   T    PR VIL+EGIL+F D  LV  + IKVFV+T SD+R IRR+ RD+ ERGR+ ES++DQY+KTVRPMHL FVEPSKR AD+I+P+G+N VALD+ +SRL++   E
Sbjct:   64 IKIPRRGSVGPNDILVIGVCGGTGSGKTTLSRAIIEEIGEANVSYLSHDYYYRDISNRTLEQRAQHNFDHPDSLETSLLVRHLEALRDGVTVEVPMYDLATHSRCADTQTMVPRRVILVEGILLFTDPDLVALMDIKVFVETPSDIRFIRRLRRDIAERGRTAESVIDQYLKTVRPMHLTFVEPSKRVADIIVPVGVNAVALDLIISRLRSYCPE 278          
BLAST of EWM23929.1 vs. NCBI_GenBank
Match: gi|922070841|ref|WP_053335176.1| (uridine kinase [Thermoanaerobaculum aquaticum])

HSP 1 Score: 256.914 bits (655), Expect = 2.875e-81
Identity = 125/213 (58.69%), Postives = 159/213 (74.65%), Query Frame = 0
Query:  110 APRQSTSGP------LTLGVAGGSGSGKTTFARALYEALGEEHVTYITHDSYYKDLSHLPFDERKKSNFDHPNALDTALLVEHLRALKRGHTVEVPEYDFATHNRLKRTCKAEPRPVILLEGILIFADRSLVQELAIKVFVDTESDLRLIRRIHRDVKERGRSLESIVDQYVKTVRPMHLEFVEPSKREADVIIPL-GMNQVALDMFLSRLQA 315
            A RQ    P      + +GVAGG+GSGKTT A A+   +G   + YI HDSYY+DLSHLP +ER + NFDHP+AL++ LLV HL ALKRG  VE+P YDF TH R   T + EPR VIL+EGILIFA+++L ++  I++FVDT++DLR IRR+ RD+ ERGR++ES++ QY+ TVRPMHLEFVEPSKR ADVIIP  G N VALDM  +R++A
Sbjct:    2 ARRQDRGAPGGLGKVVCIGVAGGTGSGKTTVAEAIVSRIGPHRIAYIQHDSYYRDLSHLPPEERIRRNFDHPDALESELLVTHLLALKRGEAVEIPVYDFTTHVRTATTRRVEPRKVILVEGILIFAEKALREQFDIRIFVDTDADLRFIRRLRRDIAERGRTVESVISQYLDTVRPMHLEFVEPSKRWADVIIPEGGFNTVALDMVCARVEA 214          
BLAST of EWM23929.1 vs. NCBI_GenBank
Match: gi|632136430|gb|KDA53254.1| (uridine kinase [Thermoanaerobaculum aquaticum])

HSP 1 Score: 256.144 bits (653), Expect = 4.638e-81
Identity = 121/198 (61.11%), Postives = 155/198 (78.28%), Query Frame = 0
Query:  119 LTLGVAGGSGSGKTTFARALYEALGEEHVTYITHDSYYKDLSHLPFDERKKSNFDHPNALDTALLVEHLRALKRGHTVEVPEYDFATHNRLKRTCKAEPRPVILLEGILIFADRSLVQELAIKVFVDTESDLRLIRRIHRDVKERGRSLESIVDQYVKTVRPMHLEFVEPSKREADVIIPL-GMNQVALDMFLSRLQA 315
            + +GVAGG+GSGKTT A A+   +G   + YI HDSYY+DLSHLP +ER + NFDHP+AL++ LLV HL ALKRG  VE+P YDF TH R   T + EPR VIL+EGILIFA+++L ++  I++FVDT++DLR IRR+ RD+ ERGR++ES++ QY+ TVRPMHLEFVEPSKR ADVIIP  G N VALDM  +R++A
Sbjct:    5 VCIGVAGGTGSGKTTVAEAIVSRIGPHRIAYIQHDSYYRDLSHLPPEERIRRNFDHPDALESELLVTHLLALKRGEAVEIPVYDFTTHVRTATTRRVEPRKVILVEGILIFAEKALREQFDIRIFVDTDADLRFIRRLRRDIAERGRTVESVISQYLDTVRPMHLEFVEPSKRWADVIIPEGGFNTVALDMVCARVEA 202          
BLAST of EWM23929.1 vs. NCBI_GenBank
Match: gi|673039903|ref|XP_008873912.1| (uridine kinase [Aphanomyces invadans] >gi|574470693|gb|ETV97703.1| uridine kinase [Aphanomyces invadans])

HSP 1 Score: 254.988 bits (650), Expect = 1.482e-79
Identity = 116/202 (57.43%), Postives = 158/202 (78.22%), Query Frame = 0
Query:  114 STSGPLTLGVAGGSGSGKTTFARALYEALGEEHVTYITHDSYYKDLSHLPFDERKKSNFDHPNALDTALLVEHLRALKRGHTVEVPEYDFATHNRLKRTCKAEPRPVILLEGILIFADRSLVQELAIKVFVDTESDLRLIRRIHRDVKERGRSLESIVDQYVKTVRPMHLEFVEPSKREADVIIPLGMNQVALDMFLSRLQA 315
            ST   L +GV GGSGSGKTT ++A+ + +G+  V+Y++HD YYKDLSHL  ++R + NFDHP+ALDTALLV HL  LK G   ++P YDF+TH+RL  T    P+ VIL+EGIL+F D  LV+ + IKVFV+T SD+R IRR+ RD++ERGR+ ES+++QY+ TVRPMHL FVEPSKR AD+++P+G+N VAL++ LSRL++
Sbjct:   73 STDDILVIGVCGGSGSGKTTLSKAIIDDIGDNAVSYLSHDFYYKDLSHLSMEQRAEHNFDHPDALDTALLVSHLAKLKHGIACDIPMYDFSTHSRLATTQHMTPKSVILIEGILLFTDPELVKLMDIKVFVETPSDVRFIRRLKRDIRERGRTAESVIEQYMTTVRPMHLLFVEPSKRVADILVPVGVNAVALELILSRLRS 274          
BLAST of EWM23929.1 vs. NCBI_GenBank
Match: gi|504245797|ref|WP_014432899.1| (uridine kinase [Caldilinea aerophila] >gi|381382844|dbj|BAL99660.1| uridine kinase [Caldilinea aerophila DSM 14535 = NBRC 104270])

HSP 1 Score: 250.751 bits (639), Expect = 6.376e-79
Identity = 113/202 (55.94%), Postives = 161/202 (79.70%), Query Frame = 0
Query:  119 LTLGVAGGSGSGKTTFARALYEALGEEHVTYITHDSYYKDLSHLPFDERKKSNFDHPNALDTALLVEHLRALKRGHTVEVPEYDFATHNRLKRTCKAEPRPVILLEGILIFADRSLVQELAIKVFVDTESDLRLIRRIHRDVKERGRSLESIVDQYVKTVRPMHLEFVEPSKREADVIIPL-GMNQVALDMFLSRLQAEVGE 319
              +GVAGG+GSGKTT +R ++EA+G E + YI HD+YYKD SHL  ++R  +N+DHP++L+T+LLVEHL+ L+ G  V++P YDF+ HNR K+T + EP  VIL+EGILIF + +L + + +++FVDT++D+R IRR+ RD+ ERGR+L+S+V QY+ TVRPMHLEFVEPSKR AD+I+P  G N+VA++M +SR+QA + E
Sbjct:   13 FVIGVAGGTGSGKTTVSRRIWEAVGRERIAYIQHDNYYKDQSHLTLEQRALTNYDHPDSLETSLLVEHLKTLRAGRPVDIPVYDFSIHNRSKQTLRIEPAKVILVEGILIFVEPALREMMDMRIFVDTDADIRFIRRLRRDMVERGRTLDSVVKQYLATVRPMHLEFVEPSKRYADIIVPQGGDNRVAMEMIVSRVQAVLNE 214          
BLAST of EWM23929.1 vs. NCBI_GenBank
Match: gi|308225515|gb|EFO79278.1| (uridine kinase [Oscillochloris trichoides DG-6])

HSP 1 Score: 251.521 bits (641), Expect = 1.012e-78
Identity = 119/202 (58.91%), Postives = 154/202 (76.24%), Query Frame = 0
Query:  117 GPLTLGVAGGSGSGKTTFARALYEALGEEHVTYITHDSYYKDLSHLPFDERKKSNFDHPNALDTALLVEHLRALKRGHTVEVPEYDFATHNRLKRTCKAEPRPVILLEGILIFADRSLVQELAIKVFVDTESDLRLIRRIHRDVKERGRSLESIVDQYVKTVRPMHLEFVEPSKREADVIIPL-GMNQVALDMFLSRLQAEV 317
             P+ +GVAGGS SGKTT ++A+ E +G + + YI HD YY DLSHLP  +R + NFDHP+ALD ALL++HL AL  G  V VP YDFAT+ RL +T   +P PVIL+EGILIF D  L + + +K+FVD + DLR IRR+ RDV+ERGRSL+S+V QY+ TVRPMHLEFVEPSKR AD+IIP  G N +A+DM ++R++AE+
Sbjct:   41 SPIIIGVAGGSASGKTTVSQAILERVGADRIAYIPHDLYYHDLSHLPLAQRAEFNFDHPDALDNALLIQHLDALSAGQPVAVPTYDFATYARLPQTQTIQPHPVILIEGILIFVDPLLRRRMQVKLFVDADPDLRFIRRLSRDVQERGRSLDSVVHQYLTTVRPMHLEFVEPSKRYADLIIPEGGYNPIAIDMLVARIEAEL 242          
The following BLAST results are available for this feature:
BLAST of EWM23929.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105214|gb|EWM23929.1|0.000e+0100.00uridine kinase [Nannochloropsis gaditana][more]
gi|647304615|ref|WP_025745951.1|5.464e-8659.71uridine kinase [bacterium JKG1][more]
gi|1173935822|gb|OQR86877.1|5.729e-8356.74uridine kinase [Achlya hypogyna][more]
gi|669145996|ref|XP_008608560.1|6.049e-8357.21hypothetical protein SDRG_04660 [Saprolegnia dicli... [more]
gi|813177445|ref|XP_012205192.1|5.465e-8256.74hypothetical protein SPRG_10843 [Saprolegnia paras... [more]
gi|922070841|ref|WP_053335176.1|2.875e-8158.69uridine kinase [Thermoanaerobaculum aquaticum][more]
gi|632136430|gb|KDA53254.1|4.638e-8161.11uridine kinase [Thermoanaerobaculum aquaticum][more]
gi|673039903|ref|XP_008873912.1|1.482e-7957.43uridine kinase [Aphanomyces invadans] >gi|57447069... [more]
gi|504245797|ref|WP_014432899.1|6.376e-7955.94uridine kinase [Caldilinea aerophila] >gi|38138284... [more]
gi|308225515|gb|EFO79278.1|1.012e-7858.91uridine kinase [Oscillochloris trichoides DG-6][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6758rna6758Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications