rna6710, rna6710 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6710
Unique Name	rna6710
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1125
Alignment location	CM002469.1:315635..317902 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100027g16.137.mrna
Orig protein id	gnl\|cribi\|Naga_100027g16.137
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:315635..317902 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100027g16	gene6488	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6710	rna6710-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23959.1	cds6694	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:315635..317902+
coding sequence from alignment at CM002469.1:315635..317902+

mRNA sequence

>rna6710 ID=rna6710|Name=rna6710|organism=Nannochloropsis gaditana|type=mRNA|length=1125bp
ATGCGCTTTACGACACTGAACTTGGTAAAGTTTGGAGGCGCAACAATATG
CACTATAAATATGTTTCGAAGCAGCCTTGCATTCTCTCCCAAGATCCACG
TGGAAACCCGCCATGTAGCCCCCACACTTCCCATCAAACCCTGGCCTACG
CGTTGGCACCAATCTTTGAGAAAAGAGCGGAGACAAAGATGGTTCTCTTC
GCGTGGAATAGCGTTGCTGTCAGTCGAGGCAGCAGCTGAAGAGGAATCCT
TGGCTGCTACGACGGCAGTGCCCTCCGAAGATGCTGCGCCCGTAGCCCGG
GGCAAAAAGAAAAATACACTACCTGACATCGCACCTTGCTCTACAGGACA
TGAAGGTAAAAAGTCAGGGGGTGCCAAATCACCGAGATCAAAAAAAGCTG
CACTCCCCCCATTCATCCCCAACCCTCGCTGGCGCGATCAGCTCGAAATT
ATCCGTGAGATGCGCAAAGACGCGACGGCTCCTGTAGACCTATTTGGATG
CTCTGAGCTTGGAAGACGGAAAGCCACTTCTCCAGAGCACATGCGCTTCC
AAACTTTGATCTCCTCCATGCTAAGCAGCCAAACGACGGACCTCGTGAAC
GAGAAAGCTATGGGCCGTCTGTTCGACGCGTGCGGGATCACTATCGAGGG
CTTAGAGGCGTTGGGAGAGGAGGGTATCGTACAGGCCATCAAGCCTGTTT
CATTCTATACAGCAAAGGCCGGCAACATTTTAAAAGTATGCGCGATTTTG
AAGACGCAGTACACCGGCGATATTCCGCGCACTTTTGAGGAACTCATGCA
GCTACCTGGAGTCGGCCCCAAGATGGCCACTCTCGTGTGCGCTTATGGAT
GGGGTGAAATTGTAGGGATCTGCGTCGACACACACGTACACCGCATCAGC
AACCGCTTAGGATGGGCCAACACGTGGAATTTCAAGAACCACAAAGCTCA
AAACCCGGAGAAGACTCGCAAGTTGCTGGAGTCTTGGATGCCCAAGGAGC
ATTGGAAAGAAGTGAACCCTCTACTAGTGGGTTTGGGTCAGCAAACTTGT
CGGGCTATCGCGCCCAAATGCGGGGACTGTAAGCTTGCGGCCGTATGTCC
CTCCTACTCTGCATCAGCGGAATGA

protein sequence of rna6710

>rna6710-protein ID=rna6710-protein|Name=rna6710|organism=Nannochloropsis gaditana|type=polypeptide|length=755bp
MPVESTISSALAVSASYPKSLEACAKLPARPFDDSFSGEDVSDCHSPGIN
PCLSNGWERFRLRLAQRTARRTLLDAKSTTVTSSSTVTDLSFGSGVRHRH
HSSSWSPNFGEGRARRTRFAFAYKREKMLTHERLHRSLLCGRVSAQSFRR
QCLRAWEHGQAITGSFSQSFGNGIDAFTYTKRESTLFSRSNSSLPGSTLA
PAAFLSRVGEAWFLRRWLACWQRRGRRYHQLQIAGRFSDRNMSHLALANL
FLYRGRRRRARMAEQKGDAFHARRLLSCWDFLARERLRQQKMTPFRQSAI
AADASSLNVTPLNTSYSSSLIDACPFTRSPGAVESIGDKADLLSTLCTLR
PPPELRLLLNRAIAALESYQSRKWRTRVDDERARRFLCGKTMMTWAARTQ
VRAWLAQNERFAAKFYSSQRLMKACRCIFRRKRFMKFQALSMRMAHIVFA
RRRATIALWRLSLLTRQRKFHADAKQVMFQSQRLRAVTRAMSLLHIPAAR
TLCYLHSYTRAHQLKSFQRAIRAWHKRAVARRLQRKAQEKVMARAQDERV
LGLKLQRWHRWMTCQQCQREAWRRGRSHFNSRLVRESLRFWARQAKLKVC
TSSMGRRRLLSRHLLAWAKTVSRQGELRAMELALACRHELLVQQRVFDKW
YASAWRQAQIRKACLAVAAEHHAHEMREILQQWRRNAKLQIYVKERLLAC
MYECLTSWMLSIQSKRMERCVWMEGKVHNEQQQKRWALRRWSARWRLNEK
KPDGN

mRNA from alignment at CM002469.1:315635..317902+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6710 ID=rna6710|Name=rna6710|organism=Nannochloropsis gaditana|type=mRNA|length=2268bp|location=Sequence derived from alignment at CM002469.1:315635..317902+ (Nannochloropsis gaditana)
ATGCCGGTGGAATCGACCATTTCGTCTGCTCTTGCGGTTTCCGCATCCTA
TCCTAAATCCTTAGAGGCTTGTGCAAAATTGCCAGCAAGGCCATTTGATG
ACAGTTTCAGTGGCGAGGATGTGAGTGACTGCCACTCCCCGGGTATCAAT
CCCTGTCTCAGTAATGGATGGGAACGATTTCGACTTCGGCTTGCTCAACG
GACGGCTCGTCGAACCCTTCTGGACGCCAAATCGACGACGGTGACATCGT
CAAGCACTGTGACGGACCTGAGCTTTGGCAGCGGCGTCAGGCATCGCCAT
CATAGCAGTTCTTGGAGCCCCAACTTtggtgaggggagggccagAAGGAC
GCGCTTTGCGTTCGCCTACAAGCGAGAAAAAATGTTAACGCATGAACGCC
TTCACCGATCACTATTATGTGGCCGCGTGTCTGCCCAATCTTTTCGGAGG
CAGTGCCTTCGTGCGTGGGAACACGGCCAAGCCATTACAGGCAGCTTCAG
CCAAAGTTTCGGCAACGGCATCGACGCGTTTACATACACAAAAAGAGAGT
CTACTCTCTTTTCACGCTCTAACTCTAGTCTCCCTGGTAGTACTCTTGCA
CCTGCTGCCTTTCTGTCCCGAGTCGGAGAGGCTTGGTTCCTGCGACGGTG
GCTGGCCTGCTGGCAGCGTCGGGGGCGGCGTTACCACCAGTTGCAGATTG
CGGGGCGTTTTAGTGATCGCAACATGAGCCATTTAGCGCTAGCAAATCTG
TTTCTATATCGGGGTCGACGCCGGCGAGCACGTATGGCTGAGCAGAAAGG
AGACGCCTTCCATGCGCGGCGTCTGCTCTCGTGCTGGGACTTCTTGGCAA
GAGAACGCCTCAGGCAACAAAAGATGACCCCTTTTCGTCAAAGCGCTATC
GCAGCCGATGCATCATCCCTTAATGTGACGCCTCTGAATACGTCCTACTC
AAGTTCGCTCATCGATGCATGTCCGTTCACGCGGAGCCCGGGTGCGGTAG
AGAGTATCGGGGACAAggccgacctcctctccacatTGTGCACGCTAAGG
CCACCGCCCGAACTGCGTCTTCTGTTGAACCGGGCTATTGCTGCCTTGGA
GAGCTATCAATCTCGGAAGTGGAGGACCAGGGTGGACGACGAGCGTGCGC
GCAGATTTCTTTGCGGCAAGACAATGATGACATGGGCCGCTCGGACTCAG
GTCCGAGCTTGGCTAGCGCAGAATGAGCGATTTGCTGCGAAGTTTTACAG
CAGCCAGCGTCTGATGAAAGCCTGTAGGTGCATTTTCCGCCGGAAGCGAT
TCATGAAATTTCAAGCTCTGTCGATGCGTATGGCACACATAGTTTTCGCC
CGCAGGCGTGCAACCATCGCCCTCTGGCGCCTGAGCTTGTTGACCCGGCA
ACGAAAGTTCCACGCGGATGCCAAGCAAGTGATGTTCCAGTCGCAGAGAC
TTCGCGCAGTGACACGAGCTATGTCTCTGCTCCACATTCCAGCAGCACGG
ACGCTCTGCTACCTGCACAGTTACACTCGCGCCCATCAGCTGAAAAGCTT
TCAACGGGCTATACGCGCCTGGCATAAACGAGCTGTAGCACGGAGGCTTC
AGCGAAAAGCACAGGAGAAAGTCATGGCAAGAGCTCAAGATGAAAGGGTC
CTTGGTCTCAAGCTTCAGCGCTGGCATAGATGGATGACCTGTCAGCAATG
TCAGAGAGaggcatggagaagggggaggtcgcACTTCAATTCTCGACTTG
TGCGTGAGAGCTTGCGTTTCTGGGCCCGGCAAGCCAAGCTCAAGGTCTGT
ACCTCCTCAATGGGGCGCCGCAGGCTTTTAAGTCGCCATCTCCTTGCCTG
GGCGAAGACAGTGAGTCGCCAAGGAGAGTTGCGGGCCATGGAGCTCGCCT
TGGCATGCCGGCATGAATTACTCGTGCAGCAACGTGTGTTCGACAAATGG
TACGCTAGCGCATGGCGCCAAGCACAAATACGCAAAGCTTGTCTAGCTGT
TGCCGCAGAGCACCATGCCCATGAAATGAGAGAAATCCTGCAACAATGGC
GGCGCAATGCGAAACTACAAATTTATGTAAAAGAGCGATTGCTTGCGTGC
ATGTACGAATGTCTGACTTCTTGGATGCTTTCCATTCAATCGAAGCGGAT
GGAGCGATGTGTTTGGATGGAAGGTAAAGTGCACAACGAGCAGCAACAGA
AGCGCTGGGCGTTGAGGCGCTGGAGCGCTAGGTGGAGACTCAACGAAAAA
AAGCCCGATGGCAACTGA

Coding sequence (CDS) from alignment at CM002469.1:315635..317902+

>rna6710 ID=rna6710|Name=rna6710|organism=Nannochloropsis gaditana|type=CDS|length=2268bp|location=Sequence derived from alignment at CM002469.1:315635..317902+ (Nannochloropsis gaditana)
ATGCCGGTGGAATCGACCATTTCGTCTGCTCTTGCGGTTTCCGCATCCTA
TCCTAAATCCTTAGAGGCTTGTGCAAAATTGCCAGCAAGGCCATTTGATG
ACAGTTTCAGTGGCGAGGATGTGAGTGACTGCCACTCCCCGGGTATCAAT
CCCTGTCTCAGTAATGGATGGGAACGATTTCGACTTCGGCTTGCTCAACG
GACGGCTCGTCGAACCCTTCTGGACGCCAAATCGACGACGGTGACATCGT
CAAGCACTGTGACGGACCTGAGCTTTGGCAGCGGCGTCAGGCATCGCCAT
CATAGCAGTTCTTGGAGCCCCAACTTtggtgaggggagggccagAAGGAC
GCGCTTTGCGTTCGCCTACAAGCGAGAAAAAATGTTAACGCATGAACGCC
TTCACCGATCACTATTATGTGGCCGCGTGTCTGCCCAATCTTTTCGGAGG
CAGTGCCTTCGTGCGTGGGAACACGGCCAAGCCATTACAGGCAGCTTCAG
CCAAAGTTTCGGCAACGGCATCGACGCGTTTACATACACAAAAAGAGAGT
CTACTCTCTTTTCACGCTCTAACTCTAGTCTCCCTGGTAGTACTCTTGCA
CCTGCTGCCTTTCTGTCCCGAGTCGGAGAGGCTTGGTTCCTGCGACGGTG
GCTGGCCTGCTGGCAGCGTCGGGGGCGGCGTTACCACCAGTTGCAGATTG
CGGGGCGTTTTAGTGATCGCAACATGAGCCATTTAGCGCTAGCAAATCTG
TTTCTATATCGGGGTCGACGCCGGCGAGCACGTATGGCTGAGCAGAAAGG
AGACGCCTTCCATGCGCGGCGTCTGCTCTCGTGCTGGGACTTCTTGGCAA
GAGAACGCCTCAGGCAACAAAAGATGACCCCTTTTCGTCAAAGCGCTATC
GCAGCCGATGCATCATCCCTTAATGTGACGCCTCTGAATACGTCCTACTC
AAGTTCGCTCATCGATGCATGTCCGTTCACGCGGAGCCCGGGTGCGGTAG
AGAGTATCGGGGACAAggccgacctcctctccacatTGTGCACGCTAAGG
CCACCGCCCGAACTGCGTCTTCTGTTGAACCGGGCTATTGCTGCCTTGGA
GAGCTATCAATCTCGGAAGTGGAGGACCAGGGTGGACGACGAGCGTGCGC
GCAGATTTCTTTGCGGCAAGACAATGATGACATGGGCCGCTCGGACTCAG
GTCCGAGCTTGGCTAGCGCAGAATGAGCGATTTGCTGCGAAGTTTTACAG
CAGCCAGCGTCTGATGAAAGCCTGTAGGTGCATTTTCCGCCGGAAGCGAT
TCATGAAATTTCAAGCTCTGTCGATGCGTATGGCACACATAGTTTTCGCC
CGCAGGCGTGCAACCATCGCCCTCTGGCGCCTGAGCTTGTTGACCCGGCA
ACGAAAGTTCCACGCGGATGCCAAGCAAGTGATGTTCCAGTCGCAGAGAC
TTCGCGCAGTGACACGAGCTATGTCTCTGCTCCACATTCCAGCAGCACGG
ACGCTCTGCTACCTGCACAGTTACACTCGCGCCCATCAGCTGAAAAGCTT
TCAACGGGCTATACGCGCCTGGCATAAACGAGCTGTAGCACGGAGGCTTC
AGCGAAAAGCACAGGAGAAAGTCATGGCAAGAGCTCAAGATGAAAGGGTC
CTTGGTCTCAAGCTTCAGCGCTGGCATAGATGGATGACCTGTCAGCAATG
TCAGAGAGaggcatggagaagggggaggtcgcACTTCAATTCTCGACTTG
TGCGTGAGAGCTTGCGTTTCTGGGCCCGGCAAGCCAAGCTCAAGGTCTGT
ACCTCCTCAATGGGGCGCCGCAGGCTTTTAAGTCGCCATCTCCTTGCCTG
GGCGAAGACAGTGAGTCGCCAAGGAGAGTTGCGGGCCATGGAGCTCGCCT
TGGCATGCCGGCATGAATTACTCGTGCAGCAACGTGTGTTCGACAAATGG
TACGCTAGCGCATGGCGCCAAGCACAAATACGCAAAGCTTGTCTAGCTGT
TGCCGCAGAGCACCATGCCCATGAAATGAGAGAAATCCTGCAACAATGGC
GGCGCAATGCGAAACTACAAATTTATGTAAAAGAGCGATTGCTTGCGTGC
ATGTACGAATGTCTGACTTCTTGGATGCTTTCCATTCAATCGAAGCGGAT
GGAGCGATGTGTTTGGATGGAAGGTAAAGTGCACAACGAGCAGCAACAGA
AGCGCTGGGCGTTGAGGCGCTGGAGCGCTAGGTGGAGACTCAACGAAAAA
AAGCCCGATGGCAACTGA

Synonyms

Publications