EWM24080.1, cds6593 (CDS) Nannochloropsis gaditana

Overview
NameEWM24080.1
Unique Namecds6593
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:65510..65729 -
Alignment locationCM002469.1:65044..65237 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24080.1
Productaldehyde dehydrogenase
Orig transcript idgnl|cribi|Naga_100963g2.9835.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:65510..65729 -
CM002469.1supercontigCM002469.1:65044..65237 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR016162Ald_DH_N
Homology
BLAST of EWM24080.1 vs. NCBI_GenBank
Match: gi|585105375|gb|EWM24080.1| (aldehyde dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 283.493 bits (724), Expect = 6.734e-97
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0
Query:    1 MLSSARGRALSCAFNRSVHRSRNHKSLLGSCSSFTFPVACAPVRNSSCKTLESFATVDPETLSGEKPYQVYNLVKGGWTLPKSSVTIPDPLNGKPFLQLPDTQADEIGPYVEALKAVPKSGLHNPFKVCAREEIILG 137
            MLSSARGRALSCAFNRSVHRSRNHKSLLGSCSSFTFPVACAPVRNSSCKTLESFATVDPETLSGEKPYQVYNLVKGGWTLPKSSVTIPDPLNGKPFLQLPDTQADEIGPYVEALKAVPKSGLHNPFKVCAREEIILG
Sbjct:    1 MLSSARGRALSCAFNRSVHRSRNHKSLLGSCSSFTFPVACAPVRNSSCKTLESFATVDPETLSGEKPYQVYNLVKGGWTLPKSSVTIPDPLNGKPFLQLPDTQADEIGPYVEALKAVPKSGLHNPFKVCAREEIILG 137          
BLAST of EWM24080.1 vs. NCBI_GenBank
Match: gi|545354342|ref|XP_005643005.1| (aldehyde dehydrogenase [Coccomyxa subellipsoidea C-169] >gi|384244965|gb|EIE18461.1| aldehyde dehydrogenase [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 115.161 bits (287), Expect = 2.322e-27
Identity = 52/82 (63.41%), Postives = 63/82 (76.83%), Query Frame = 0
Query:   46 SSCKTLESFATVDPETLSGEKPYQVYNLVKGGWTLPKSSVTIPDPLNGKPFLQLPDTQADEIGPYVEALKAVPKSGLHNPFK 127
             S + L S+A+VDP  +SG  P Q YNLV G W LP  S TIPDPLNG+PF++LPDTQ DEI P+V++L+AVPKSGLHNP K
Sbjct:   17 QSQRLLSSWASVDPSAISGSNPGQAYNLVNGEWGLPAKSKTIPDPLNGEPFIKLPDTQLDEIDPFVQSLRAVPKSGLHNPLK 98          
BLAST of EWM24080.1 vs. NCBI_GenBank
Match: gi|971510682|dbj|GAQ87509.1| (delta-1-pyrroline-5-carboxylate dehydrogenase 1 protein [Klebsormidium nitens])

HSP 1 Score: 104.375 bits (259), Expect = 1.686e-23
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 0
Query:   50 TLESFATVDPETLSGEKPYQVYNLVKGGWTLPKSSVTIPDPLNGKPFLQLPDTQADEIGPYVEALKAVPKSGLHNPFK 127
            ++ SFAT+DP+ LSG +P   YNLV G WT   S+V IPDPL G+PFL +P+TQ DE  P++ +LK+VPKSGLHNPFK
Sbjct:   26 SVPSFATLDPDALSGSQPGTAYNLVGGEWTSSASAVPIPDPLTGEPFLTIPNTQRDECAPFIASLKSVPKSGLHNPFK 103          
BLAST of EWM24080.1 vs. NCBI_GenBank
Match: gi|926776824|ref|XP_013896886.1| (1-pyrroline-5-carboxylate dehydrogenase [Monoraphidium neglectum] >gi|761966025|gb|KIY97866.1| 1-pyrroline-5-carboxylate dehydrogenase [Monoraphidium neglectum])

HSP 1 Score: 98.5969 bits (244), Expect = 1.448e-22
Identity = 45/83 (54.22%), Postives = 61/83 (73.49%), Query Frame = 0
Query:   46 SSCKTLESFATVDPETLSGEKPYQVYNLVKGGWTLPKSSVTIPDPLNGKPFLQLPDTQAD-EIGPYVEALKAVPKSGLHNPFK 127
            S+ + + S+ATVD +  SG  P +  NLV G W    SS+T+PDPLNG+PF  +PDTQ D E+ P++++LKAVPK+GLHNPFK
Sbjct:   27 SAKRGVASWATVDVDRWSGAHPAKAQNLVGGKWVDAASSITVPDPLNGEPFTHVPDTQGDAELRPFIDSLKAVPKTGLHNPFK 109          
BLAST of EWM24080.1 vs. NCBI_GenBank
Match: gi|302853211|ref|XP_002958122.1| (aldehyde dehydrogenase [Volvox carteri f. nagariensis] >gi|300256590|gb|EFJ40853.1| aldehyde dehydrogenase [Volvox carteri f. nagariensis])

HSP 1 Score: 99.7525 bits (247), Expect = 9.119e-22
Identity = 47/84 (55.95%), Postives = 60/84 (71.43%), Query Frame = 0
Query:   49 KTLESFATVDPETLSGEKPYQVYNLVKGGWTLPKSSVTIPDPLNGKPFLQLPDTQADEIGPYVEALKAVPKSGLHNPFKVCARE 132
            ++L  +ATVDPE +SG  P    NLV G W    +S  +PDPLNG+ FLQ+P TQ DEIGP+V++L+AVPKSGLHNP K   R+
Sbjct:   24 RSLTGWATVDPERMSGSAPAACLNLVGGHWLPSGASRQLPDPLNGEHFLQVPHTQPDEIGPFVQSLRAVPKSGLHNPLKDPQRQ 107          
BLAST of EWM24080.1 vs. NCBI_GenBank
Match: gi|159477663|ref|XP_001696928.1| (aldehyde dehydrogenase [Chlamydomonas reinhardtii] >gi|158274840|gb|EDP00620.1| aldehyde dehydrogenase [Chlamydomonas reinhardtii])

HSP 1 Score: 98.5969 bits (244), Expect = 2.132e-21
Identity = 45/80 (56.25%), Postives = 56/80 (70.00%), Query Frame = 0
Query:   48 CKTLESFATVDPETLSGEKPYQVYNLVKGGWTLPKSSVTIPDPLNGKPFLQLPDTQADEIGPYVEALKAVPKSGLHNPFK 127
             +    +ATVDP+ LSG  P    NLV G WT  + S  +PDPLNG+PF+ +P TQ DEI P+VE+L+AVPKSGLHNP K
Sbjct:   25 ARQFTEWATVDPKKLSGAAPASCQNLVAGRWTGSRESRQLPDPLNGEPFISVPHTQVDEITPFVESLRAVPKSGLHNPLK 104          
BLAST of EWM24080.1 vs. NCBI_GenBank
Match: gi|1004144865|gb|KXZ52844.1| (hypothetical protein GPECTOR_8g227 [Gonium pectorale])

HSP 1 Score: 97.4413 bits (241), Expect = 4.293e-21
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 0
Query:   37 PVACAPVRNSSCKTLESFATVDPETLSGEKPYQVYNLVKGGWTLPKSSVTIPDPLNGKPFLQLPDTQADEIGPYVEALKAVPKSGLHNPFK 127
            P+A  P+     + L  +ATVDP+ LSG  P    NLV G W   + S  +PDPLNG+PF+ +P TQ DEI P+VE+L+AVPK+GLHNP K
Sbjct:   13 PLAFGPLMQL-VRNLSEWATVDPQKLSGSAPGTCANLVSGRWQPSRESRLLPDPLNGQPFISVPHTQPDEIAPFVESLRAVPKTGLHNPLK 102          
BLAST of EWM24080.1 vs. NCBI_GenBank
Match: gi|552816619|ref|XP_005844734.1| (hypothetical protein CHLNCDRAFT_32475 [Chlorella variabilis] >gi|307104378|gb|EFN52632.1| hypothetical protein CHLNCDRAFT_32475 [Chlorella variabilis])

HSP 1 Score: 97.8265 bits (242), Expect = 4.310e-21
Identity = 43/97 (44.33%), Postives = 64/97 (65.98%), Query Frame = 0
Query:   38 VACAPVRNSS-------CKTLESFATVDPETLSGEKPYQVYNLVKGGWTLPKSSVTIPDPLNGKPFLQLPDTQADEIGPYVEALKAVPKSGLHNPFK 127
            +AC+ +R  +       C+ + S++  +P  +SG  P Q  NLV G W   + ++ IPDPLNG+PF+Q+PDTQ  E+ P+V ++KA PKSG+HNPFK
Sbjct:    2 LACSAMRREALGHAAGLCRGVASWSKFNPAAMSGSNPAQASNLVYGEWVQAEKTMAIPDPLNGEPFIQVPDTQLYEVEPFVASMKATPKSGMHNPFK 98          
BLAST of EWM24080.1 vs. NCBI_GenBank
Match: gi|698784065|ref|XP_009825076.1| (hypothetical protein H257_02935 [Aphanomyces astaci] >gi|574119579|gb|ETV85058.1| hypothetical protein H257_02935 [Aphanomyces astaci])

HSP 1 Score: 96.6709 bits (239), Expect = 1.161e-20
Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 0
Query:   37 PVACAPVRN-SSCKTLESFATVDPETLSGEKPYQVYNLVKGGWTLPKSSVTIPDPLNGKPFLQLPDTQADEIGPYVEALKAVPKSGLHNPFKVCAR 131
            P+  A  RN S+   L S+A V+PETLSG  P +++NLV G W   K S  I DPL G+ FLQ+P TQ DE+ P+++ L++ PK GLHNPFK   R
Sbjct:   11 PLTSALRRNASTAYALPSWAKVNPETLSGASPAEIHNLVNGEWVSTKKSEGIKDPLTGEVFLQVPLTQKDELKPFIDNLRSTPKHGLHNPFKNVER 106          
BLAST of EWM24080.1 vs. NCBI_GenBank
Match: gi|760443533|ref|XP_011398835.1| (putative aldehyde dehydrogenase [Auxenochlorella protothecoides] >gi|675353499|gb|KFM25939.1| putative aldehyde dehydrogenase [Auxenochlorella protothecoides])

HSP 1 Score: 95.5153 bits (236), Expect = 2.999e-20
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 0
Query:   51 LESFATVDPETLSGEKPYQVYNLVKGGWTLPKSSVTIPDPLNGKPFLQLPDTQADEIGPYVEALKAVPKSGLHNPFKVCAR 131
            L  ++ VDP  LSG  P  + NLV G WT    S+++ DP+NG+PFL +PDTQ DEI P++++L++VPKSGLHNP K+  R
Sbjct:   28 LSEWSRVDPAQLSGSSPAALSNLVAGEWTQTAQSLSVVDPMNGEPFLAVPDTQLDEIQPFIDSLRSVPKSGLHNPLKLPER 108          
The following BLAST results are available for this feature:
BLAST of EWM24080.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105375|gb|EWM24080.1|6.734e-97100.00aldehyde dehydrogenase [Nannochloropsis gaditana][more]
gi|545354342|ref|XP_005643005.1|2.322e-2763.41aldehyde dehydrogenase [Coccomyxa subellipsoidea C... [more]
gi|971510682|dbj|GAQ87509.1|1.686e-2360.26delta-1-pyrroline-5-carboxylate dehydrogenase 1 pr... [more]
gi|926776824|ref|XP_013896886.1|1.448e-2254.221-pyrroline-5-carboxylate dehydrogenase [Monoraphi... [more]
gi|302853211|ref|XP_002958122.1|9.119e-2255.95aldehyde dehydrogenase [Volvox carteri f. nagarien... [more]
gi|159477663|ref|XP_001696928.1|2.132e-2156.25aldehyde dehydrogenase [Chlamydomonas reinhardtii]... [more]
gi|1004144865|gb|KXZ52844.1|4.293e-2151.65hypothetical protein GPECTOR_8g227 [Gonium pectora... [more]
gi|552816619|ref|XP_005844734.1|4.310e-2144.33hypothetical protein CHLNCDRAFT_32475 [Chlorella v... [more]
gi|698784065|ref|XP_009825076.1|1.161e-2050.00hypothetical protein H257_02935 [Aphanomyces astac... [more]
gi|760443533|ref|XP_011398835.1|2.999e-2051.85putative aldehyde dehydrogenase [Auxenochlorella p... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6609rna6609Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications