rna6609, rna6609 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6609
Unique Name	rna6609
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	943
Alignment location	CM002469.1:64926..65824 -

Link to JBrowse

Properties


Property Name	Value
Product	aldehyde dehydrogenase
Orig transcript id	gnl\|cribi\|Naga_100963g2.9835.mrna
Orig protein id	gnl\|cribi\|Naga_100963g2.9835
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:64926..65824 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100963g2	gene6389	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6609	rna6609-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24080.1	cds6593	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:64926..65824-
coding sequence from alignment at CM002469.1:64926..65824-

mRNA sequence

>rna6609 ID=rna6609|Name=rna6609|organism=Nannochloropsis gaditana|type=mRNA|length=943bp
GGTACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCACTTTTCCTCCT
TCCCTCTCCCTTCCCTTCCCTCCCCCTCTCCCTCCCTCACCTGCCCCCCT
TCCTCTTCTCTTCCCTGTTTCTCTTCCTGTCTGTGCTCCCTCCTCTCCTT
TCCATCTGCTCTGATCCCGTATCTTCCTCCCTGCCCCCCTCCCGCCCTCC
CGCCCCCCCGCCCTCCCGCCGGTCTCCTTCCCACACAGGACAAAAGTGCT
CGGCGCAATCCATCCTCTTCGCCCACGAAAACTGGCAGCAAGCGGGGCTG
GAATCCAAACTGCGGACCCTAGCCGCCCGTCGCTCCCTCGCCGATTTCAC
ACTCGGCCCGGTCTTGACCGTGACGACGGAGCGTTTCCTCGCCCACTGCC
AAGCGCTCTTGGATACAATCCCGGGGACGAAGATTCTCTGGGGGGGGAAA
GCGTTGAGCAAAGCCGCCATGGCCCCGCACGAGATCCCCACGTGCTACGG
TGCCTTTGAACCGACTGCTGTCTACGTGCCGCTGGAAGGGATGTTGGCCA
GCCCGGACGCCTTCCATCTGGCGACGACCGAGATTTTTGGCCCTTTCTAC
ATTTATACGACCTGGAAAGATGGGGAACTGCCCCTGGTCCTGGAGGCCTT
GGAGCGGATGGAGAACCATTTGACCGCTGCCGTGGTCAGTAACGACGTCG
TCTTCACCCGGGCCGTGGTGGGCTCCACTGTGAACGGCACCACCTACATC
GGTCGCCGTGCCCGAACGACGGGCGCGCCGCAGAACCATTGGTTCGGTCC
CTGCGGGGACCCTCGAGGAGCGGGGATTGGGACGCCGGAGGCCATCAAGA
GCGTTTGGAGTGCGCACCGGGAGGTGGTGACGGACGAAGGGCCTGTGGGG
GAAGGGTGGACGATGCCGGGGCCGACGTGAGGGAGGGAGGGAG

protein sequence of rna6609

>rna6609-protein ID=rna6609-protein|Name=rna6609|organism=Nannochloropsis gaditana|type=polypeptide|length=137bp
MLSSARGRALSCAFNRSVHRSRNHKSLLGSCSSFTFPVACAPVRNSSCKT
LESFATVDPETLSGEKPYQVYNLVKGGWTLPKSSVTIPDPLNGKPFLQLP
DTQADEIGPYVEALKAVPKSGLHNPFKVCAREEIILG

mRNA from alignment at CM002469.1:64926..65824-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6609 ID=rna6609|Name=rna6609|organism=Nannochloropsis gaditana|type=mRNA|length=899bp|location=Sequence derived from alignment at CM002469.1:64926..65824- (Nannochloropsis gaditana)
CTTTCGTCTGATTGCCCCGTCCAAGTCTTTCCCTCCCATGCCCACCCAAT
CCGCACGATTAAGACTCTTCCTGTCCGTATCCATTGACAGCAAGCATGCT
TTCTTCGGCTCGAGGTCGCGCACTGTCCTGTGCTTTCAACCGATCAGTGC
ACCGAAGTCGGAATCACAAGTCCCTTCTTGGCTCCTGCTCCTCCTTCACT
TTTCCTGTGGCGTGTGCACCGGTGCGAAATAGCAGCTGCAAAACCTTGGA
GAGCTTTGCCACCGTTGATCCGGAGACTTTGTCGGGCGAGAAGCCCTATC
AAGTGTACAATTTGGGTAAGTAATAAAGGACGGGCGAGGATGCAGTTGTT
GTTCTTTATTTAAGGGTCAGGGAAAGGACAGCACGCATGGTATGAAAGAC
TCTTTTGAAAAAGGACGTCCAACCCTTCAATGGCAAGGCTTGCATAGATA
CACTGCGGAAAAATGAAGGGGTGGAAAGCGTGCGCTGAAGGTGACAAGAT
TCAAGCAAACCTCCCCCCCTCCTCCCCTCCCTCCTTCCCGCCCTCCCTCC
TTCCCTCCCTCCTCCACTCCCCTGCTTCTTCTCGCAGTCAAGGGTGGGTG
GACGCTGCCCAAGTCCAGCGTCACGATTCCTGATCCCTTGAATGGCAAGC
CTTTCCTCCAACTGCCCGACACTCAGGCGGACGAGATCGGTCCCTACGTG
GAGGCGTTGAAGGCGGTGCCCAAAAGTGGGCTGCACAACCCCTTTAAGGT
ATGTGCAAGAGAAGAAATTATCCTTGGGTAGAGAGGAGGAAAGGGAAGAG
ATGGAGGGGACAGATCAGGGCGGAGTCACGGGTGGCAACGTTTTGTAAAG
GTGACTTCAAGAAAGTGTGGGACCGAGCGTGGAAGGCAACCACAACACG

Coding sequence (CDS) from alignment at CM002469.1:64926..65824-

>rna6609 ID=rna6609|Name=rna6609|organism=Nannochloropsis gaditana|type=CDS|length=828bp|location=Sequence derived from alignment at CM002469.1:64926..65824- (Nannochloropsis gaditana)
TCAAGGGTGGGTGGACGCTGCCCAAGTCCAGCGTCACGATTCCTGATCCC
TTGAATGGCAAGCCTTTCCTCCAACTGCCCGACACTCAGGCGGACGAGAT
CGGTCCCTACGTGGAGGCGTTGAAGGCGGTGCCCAAAAGTGGGCTGCACA
ACCCCTTTAAGGTATGTGCAAGAGAAGAAATTATCCTTGGGTAGATGCTT
TCTTCGGCTCGAGGTCGCGCACTGTCCTGTGCTTTCAACCGATCAGTGCA
CCGAAGTCGGAATCACAAGTCCCTTCTTGGCTCCTGCTCCTCCTTCACTT
TTCCTGTGGCGTGTGCACCGGTGCGAAATAGCAGCTGCAAAACCTTGGAG
AGCTTTGCCACCGTTGATCCGGAGACTTTGTCGGGCGAGAAGCCCTATCA
AGTGTACAATTTGGTCAAGGGTGGGTGGACGCTGCCCAAGTCCAGCGTCA
CGATTCCTGATCCCTTGAATGGCAAGCCTTTCCTCCAACTGCCCGACACT
CAGGCGGACGAGATCGGTCCCTACGTGGAGGCGTTGAAGGCGGTGCCCAA
AAGTGGGCTGCACAACCCCTTTAAGGTATGTGCAAGAGAAGAAATTATCC
TTGGGTAGATGCTTTCTTCGGCTCGAGGTCGCGCACTGTCCTGTGCTTTC
AACCGATCAGTGCACCGAAGTCGGAATCACAAGTCCCTTCTTGGCTCCTG
CTCCTCCTTCACTTTTCCTGTGGCGTGTGCACCGGTGCGAAATAGCAGCT
GCAAAACCTTGGAGAGCTTTGCCACCGTTGATCCGGAGACTTTGTCGGGC
GAGAAGCCCTATCAAGTGTACAATTTGG

Synonyms

Publications