EWM24102.1, cds6571 (CDS) Nannochloropsis gaditana

Overview
NameEWM24102.1
Unique Namecds6571
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:1276..1413 -
Alignment locationCM002469.1:893..1063 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24102.1
Productmg chelatase subunit
Orig transcript idgnl|cribi|Naga_102668g1.44.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:1276..1413 -
CM002469.1supercontigCM002469.1:893..1063 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0015979photosynthesis
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: Cellular Component
TermDefinition
GO:0009507chloroplast
Homology
BLAST of EWM24102.1 vs. NCBI_GenBank
Match: gi|585105433|gb|EWM24102.1| (mg chelatase subunit [Nannochloropsis gaditana])

HSP 1 Score: 199.519 bits (506), Expect = 1.046e-64
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0
Query:    1 MTSAVPFLPPSLPPFLPPSLLKERLKSSRRNWKDLETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPGGEGGREGGREGGRGDDFKTQERDPGS 102
            MTSAVPFLPPSLPPFLPPSLLKERLKSSRRNWKDLETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPGGEGGREGGREGGRGDDFKTQERDPGS
Sbjct:    1 MTSAVPFLPPSLPPFLPPSLLKERLKSSRRNWKDLETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPGGEGGREGGREGGRGDDFKTQERDPGS 102          
BLAST of EWM24102.1 vs. NCBI_GenBank
Match: gi|551635331|ref|XP_005820500.1| (Mg chelatase, subunitD [Guillardia theta CCMP2712] >gi|428164496|gb|EKX33520.1| Mg chelatase, subunitD [Guillardia theta CCMP2712])

HSP 1 Score: 75.8702 bits (185), Expect = 6.684e-14
Identity = 31/57 (54.39%), Postives = 46/57 (80.70%), Query Frame = 0
Query:   20 LLKERLKSSRRNWKDLETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPG 76
             L   L +S +++KDLETE+I  PFV+VP+ V++DRLLGS+D+E+S+R+GK  F+PG
Sbjct:  177 FLANELAASGKDFKDLETEVIECPFVQVPLNVLDDRLLGSVDVEQSVRQGKTVFEPG 233          
BLAST of EWM24102.1 vs. NCBI_GenBank
Match: gi|922867296|gb|KOO33966.1| (mg chelatase subunit [Chrysochromulina sp. CCMP291])

HSP 1 Score: 75.0998 bits (183), Expect = 1.113e-13
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 0
Query:   19 SLLKERLKSSRRNWKDLETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPG 76
            S L   L+++ +  +DLETEIIP PFV+VP+ V+EDRLLGS+D+E+S+R GK  F+PG
Sbjct:  109 SFLLAELQATGKKLEDLETEIIPTPFVQVPLDVLEDRLLGSVDVEKSVRTGKTVFEPG 166          
BLAST of EWM24102.1 vs. NCBI_GenBank
Match: gi|506436286|ref|WP_015956003.1| (magnesium chelatase ATPase subunit D [Cyanothece sp. PCC 7424] >gi|218173685|gb|ACK72418.1| magnesium chelatase ATPase subunit D [Cyanothece sp. PCC 7424])

HSP 1 Score: 72.7886 bits (177), Expect = 6.634e-13
Identity = 31/46 (67.39%), Postives = 41/46 (89.13%), Query Frame = 0
Query:   31 NWKDLETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPG 76
            N  D+ TEIIPAPF+++PIGV EDRLLGS+D+EES+++G+A FQPG
Sbjct:   92 NTIDIPTEIIPAPFIQIPIGVTEDRLLGSVDVEESVKRGEAVFQPG 137          
BLAST of EWM24102.1 vs. NCBI_GenBank
Match: gi|1189310795|ref|WP_085727043.1| (magnesium chelatase ATPase subunit D [Cylindrospermopsis raciborskii] >gi|1187451700|gb|OSO94659.1| magnesium chelatase ATPase subunit D [Cylindrospermopsis raciborskii CENA303])

HSP 1 Score: 72.7886 bits (177), Expect = 8.375e-13
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 0
Query:    3 SAVPFLPPSLPPFLPP-SLLKERLKSSR----RNWKD--------LETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPG 76
            +A   +  ++   LPP  ++K+ L +        W D        LETEIIP PFV++P+GV EDRLLGS+D+E+S+++GK  FQPG
Sbjct:   49 TAKSVMARAIHALLPPIEIIKDSLSNCSPDQPETWDDQLLAQTLELETEIIPVPFVQIPLGVTEDRLLGSVDVEQSVKQGKTVFQPG 135          
BLAST of EWM24102.1 vs. NCBI_GenBank
Match: gi|750262548|ref|WP_040553567.1| (magnesium chelatase ATPase subunit D [Raphidiopsis brookii])

HSP 1 Score: 72.7886 bits (177), Expect = 8.539e-13
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 0
Query:    3 SAVPFLPPSLPPFLPP-SLLKERLKSSR----RNWKD--------LETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPG 76
            +A   +  ++   LPP  ++K+ L +        W D        LETEIIP PFV++P+GV EDRLLGS+D+E+S+++GK  FQPG
Sbjct:   49 TAKSVMARAIHALLPPIEIIKDSLSNCSPDQPETWDDQLLAQTLELETEIIPVPFVQIPLGVTEDRLLGSVDVEQSVKQGKTVFQPG 135          
BLAST of EWM24102.1 vs. NCBI_GenBank
Match: gi|281198456|gb|EFA73344.1| (Magnesium chelatase ATPase subunit D [Raphidiopsis brookii D9])

HSP 1 Score: 72.7886 bits (177), Expect = 8.541e-13
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 0
Query:    3 SAVPFLPPSLPPFLPP-SLLKERLKSSR----RNWKD--------LETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPG 76
            +A   +  ++   LPP  ++K+ L +        W D        LETEIIP PFV++P+GV EDRLLGS+D+E+S+++GK  FQPG
Sbjct:   51 TAKSVMARAIHALLPPIEIIKDSLSNCSPDQPETWDDQLLAQTLELETEIIPVPFVQIPLGVTEDRLLGSVDVEQSVKQGKTVFQPG 137          
BLAST of EWM24102.1 vs. NCBI_GenBank
Match: gi|1121307815|ref|WP_073619323.1| (magnesium chelatase ATPase subunit D [Calothrix sp. HK-06] >gi|1115289369|gb|OKH52451.1| magnesium chelatase ATPase subunit D [Calothrix sp. HK-06])

HSP 1 Score: 72.4034 bits (176), Expect = 9.907e-13
Identity = 30/51 (58.82%), Postives = 43/51 (84.31%), Query Frame = 0
Query:   26 KSSRRNWKDLETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPG 76
            +S+R   + +ETEIIPAPFV++P+G+ EDRLLGS+D+EES+++G   FQPG
Sbjct:  101 RSTRETRETVETEIIPAPFVQIPLGITEDRLLGSVDVEESVKQGATIFQPG 151          
BLAST of EWM24102.1 vs. NCBI_GenBank
Match: gi|506264486|ref|WP_015784261.1| (magnesium chelatase ATPase subunit D [Cyanothece sp. PCC 8802] >gi|256590586|gb|ACV01473.1| magnesium chelatase ATPase subunit D [Cyanothece sp. PCC 8802])

HSP 1 Score: 72.0182 bits (175), Expect = 1.225e-12
Identity = 31/45 (68.89%), Postives = 41/45 (91.11%), Query Frame = 0
Query:   32 WKDLETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPG 76
             +D+ TEIIPAPFV++PIGV EDRLLGS+D+EES+++G+A FQPG
Sbjct:   95 LEDIPTEIIPAPFVQIPIGVTEDRLLGSVDVEESVKRGEAVFQPG 139          
BLAST of EWM24102.1 vs. NCBI_GenBank
Match: gi|543517580|emb|CCQ49919.1| (Protoporphyrin IX Mg-chelatase subunit D [Crocosphaera watsonii WH 8502])

HSP 1 Score: 72.0182 bits (175), Expect = 1.312e-12
Identity = 30/44 (68.18%), Postives = 41/44 (93.18%), Query Frame = 0
Query:   33 KDLETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPG 76
            +D+ TEI+PAPF++VPIGV EDRLLGS+D+EES+++G+A FQPG
Sbjct:  104 EDITTEIVPAPFIQVPIGVTEDRLLGSVDVEESVKQGEAIFQPG 147          
The following BLAST results are available for this feature:
BLAST of EWM24102.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105433|gb|EWM24102.1|1.046e-64100.00mg chelatase subunit [Nannochloropsis gaditana][more]
gi|551635331|ref|XP_005820500.1|6.684e-1454.39Mg chelatase, subunitD [Guillardia theta CCMP2712]... [more]
gi|922867296|gb|KOO33966.1|1.113e-1356.90mg chelatase subunit [Chrysochromulina sp. CCMP291... [more]
gi|506436286|ref|WP_015956003.1|6.634e-1367.39magnesium chelatase ATPase subunit D [Cyanothece s... [more]
gi|1189310795|ref|WP_085727043.1|8.375e-1342.53magnesium chelatase ATPase subunit D [Cylindrosper... [more]
gi|750262548|ref|WP_040553567.1|8.539e-1342.53magnesium chelatase ATPase subunit D [Raphidiopsis... [more]
gi|281198456|gb|EFA73344.1|8.541e-1342.53Magnesium chelatase ATPase subunit D [Raphidiopsis... [more]
gi|1121307815|ref|WP_073619323.1|9.907e-1358.82magnesium chelatase ATPase subunit D [Calothrix sp... [more]
gi|506264486|ref|WP_015784261.1|1.225e-1268.89magnesium chelatase ATPase subunit D [Cyanothece s... [more]
gi|543517580|emb|CCQ49919.1|1.312e-1268.18Protoporphyrin IX Mg-chelatase subunit D [Crocosph... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6587rna6587Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications