EWM24102.1, cds6571 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24102.1 vs. NCBI_GenBank
Match: gi|585105433|gb|EWM24102.1| (mg chelatase subunit [Nannochloropsis gaditana]) HSP 1 Score: 199.519 bits (506), Expect = 1.046e-64 Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0
Query: 1 MTSAVPFLPPSLPPFLPPSLLKERLKSSRRNWKDLETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPGGEGGREGGREGGRGDDFKTQERDPGS 102
MTSAVPFLPPSLPPFLPPSLLKERLKSSRRNWKDLETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPGGEGGREGGREGGRGDDFKTQERDPGS
Sbjct: 1 MTSAVPFLPPSLPPFLPPSLLKERLKSSRRNWKDLETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPGGEGGREGGREGGRGDDFKTQERDPGS 102
BLAST of EWM24102.1 vs. NCBI_GenBank
Match: gi|551635331|ref|XP_005820500.1| (Mg chelatase, subunitD [Guillardia theta CCMP2712] >gi|428164496|gb|EKX33520.1| Mg chelatase, subunitD [Guillardia theta CCMP2712]) HSP 1 Score: 75.8702 bits (185), Expect = 6.684e-14 Identity = 31/57 (54.39%), Postives = 46/57 (80.70%), Query Frame = 0
Query: 20 LLKERLKSSRRNWKDLETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPG 76
L L +S +++KDLETE+I PFV+VP+ V++DRLLGS+D+E+S+R+GK F+PG
Sbjct: 177 FLANELAASGKDFKDLETEVIECPFVQVPLNVLDDRLLGSVDVEQSVRQGKTVFEPG 233
BLAST of EWM24102.1 vs. NCBI_GenBank
Match: gi|922867296|gb|KOO33966.1| (mg chelatase subunit [Chrysochromulina sp. CCMP291]) HSP 1 Score: 75.0998 bits (183), Expect = 1.113e-13 Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 0
Query: 19 SLLKERLKSSRRNWKDLETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPG 76
S L L+++ + +DLETEIIP PFV+VP+ V+EDRLLGS+D+E+S+R GK F+PG
Sbjct: 109 SFLLAELQATGKKLEDLETEIIPTPFVQVPLDVLEDRLLGSVDVEKSVRTGKTVFEPG 166
BLAST of EWM24102.1 vs. NCBI_GenBank
Match: gi|506436286|ref|WP_015956003.1| (magnesium chelatase ATPase subunit D [Cyanothece sp. PCC 7424] >gi|218173685|gb|ACK72418.1| magnesium chelatase ATPase subunit D [Cyanothece sp. PCC 7424]) HSP 1 Score: 72.7886 bits (177), Expect = 6.634e-13 Identity = 31/46 (67.39%), Postives = 41/46 (89.13%), Query Frame = 0
Query: 31 NWKDLETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPG 76
N D+ TEIIPAPF+++PIGV EDRLLGS+D+EES+++G+A FQPG
Sbjct: 92 NTIDIPTEIIPAPFIQIPIGVTEDRLLGSVDVEESVKRGEAVFQPG 137
BLAST of EWM24102.1 vs. NCBI_GenBank
Match: gi|1189310795|ref|WP_085727043.1| (magnesium chelatase ATPase subunit D [Cylindrospermopsis raciborskii] >gi|1187451700|gb|OSO94659.1| magnesium chelatase ATPase subunit D [Cylindrospermopsis raciborskii CENA303]) HSP 1 Score: 72.7886 bits (177), Expect = 8.375e-13 Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 0
Query: 3 SAVPFLPPSLPPFLPP-SLLKERLKSSR----RNWKD--------LETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPG 76
+A + ++ LPP ++K+ L + W D LETEIIP PFV++P+GV EDRLLGS+D+E+S+++GK FQPG
Sbjct: 49 TAKSVMARAIHALLPPIEIIKDSLSNCSPDQPETWDDQLLAQTLELETEIIPVPFVQIPLGVTEDRLLGSVDVEQSVKQGKTVFQPG 135
BLAST of EWM24102.1 vs. NCBI_GenBank
Match: gi|750262548|ref|WP_040553567.1| (magnesium chelatase ATPase subunit D [Raphidiopsis brookii]) HSP 1 Score: 72.7886 bits (177), Expect = 8.539e-13 Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 0
Query: 3 SAVPFLPPSLPPFLPP-SLLKERLKSSR----RNWKD--------LETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPG 76
+A + ++ LPP ++K+ L + W D LETEIIP PFV++P+GV EDRLLGS+D+E+S+++GK FQPG
Sbjct: 49 TAKSVMARAIHALLPPIEIIKDSLSNCSPDQPETWDDQLLAQTLELETEIIPVPFVQIPLGVTEDRLLGSVDVEQSVKQGKTVFQPG 135
BLAST of EWM24102.1 vs. NCBI_GenBank
Match: gi|281198456|gb|EFA73344.1| (Magnesium chelatase ATPase subunit D [Raphidiopsis brookii D9]) HSP 1 Score: 72.7886 bits (177), Expect = 8.541e-13 Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 0
Query: 3 SAVPFLPPSLPPFLPP-SLLKERLKSSR----RNWKD--------LETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPG 76
+A + ++ LPP ++K+ L + W D LETEIIP PFV++P+GV EDRLLGS+D+E+S+++GK FQPG
Sbjct: 51 TAKSVMARAIHALLPPIEIIKDSLSNCSPDQPETWDDQLLAQTLELETEIIPVPFVQIPLGVTEDRLLGSVDVEQSVKQGKTVFQPG 137
BLAST of EWM24102.1 vs. NCBI_GenBank
Match: gi|1121307815|ref|WP_073619323.1| (magnesium chelatase ATPase subunit D [Calothrix sp. HK-06] >gi|1115289369|gb|OKH52451.1| magnesium chelatase ATPase subunit D [Calothrix sp. HK-06]) HSP 1 Score: 72.4034 bits (176), Expect = 9.907e-13 Identity = 30/51 (58.82%), Postives = 43/51 (84.31%), Query Frame = 0
Query: 26 KSSRRNWKDLETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPG 76
+S+R + +ETEIIPAPFV++P+G+ EDRLLGS+D+EES+++G FQPG
Sbjct: 101 RSTRETRETVETEIIPAPFVQIPLGITEDRLLGSVDVEESVKQGATIFQPG 151
BLAST of EWM24102.1 vs. NCBI_GenBank
Match: gi|506264486|ref|WP_015784261.1| (magnesium chelatase ATPase subunit D [Cyanothece sp. PCC 8802] >gi|256590586|gb|ACV01473.1| magnesium chelatase ATPase subunit D [Cyanothece sp. PCC 8802]) HSP 1 Score: 72.0182 bits (175), Expect = 1.225e-12 Identity = 31/45 (68.89%), Postives = 41/45 (91.11%), Query Frame = 0
Query: 32 WKDLETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPG 76
+D+ TEIIPAPFV++PIGV EDRLLGS+D+EES+++G+A FQPG
Sbjct: 95 LEDIPTEIIPAPFVQIPIGVTEDRLLGSVDVEESVKRGEAVFQPG 139
BLAST of EWM24102.1 vs. NCBI_GenBank
Match: gi|543517580|emb|CCQ49919.1| (Protoporphyrin IX Mg-chelatase subunit D [Crocosphaera watsonii WH 8502]) HSP 1 Score: 72.0182 bits (175), Expect = 1.312e-12 Identity = 30/44 (68.18%), Postives = 41/44 (93.18%), Query Frame = 0
Query: 33 KDLETEIIPAPFVEVPIGVMEDRLLGSIDLEESIRKGKAAFQPG 76
+D+ TEI+PAPF++VPIGV EDRLLGS+D+EES+++G+A FQPG
Sbjct: 104 EDITTEIVPAPFIQVPIGVTEDRLLGSVDVEESVKQGEAIFQPG 147 The following BLAST results are available for this feature:
BLAST of EWM24102.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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