rna6575, rna6575 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6575
Unique Name	rna6575
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	633
Alignment location	CM002468.1:827306..829416 +

Link to JBrowse

Properties


Property Name	Value
Product	expressed unknown protein
Orig transcript id	gnl\|cribi\|Naga_100404g1.9936.mrna
Orig protein id	gnl\|cribi\|Naga_100404g1.9936
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:827306..829416 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100404g1	gene6354	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6575	rna6575-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24115.1	cds6559	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:827306..829416+
coding sequence from alignment at CM002468.1:827306..829416+

mRNA sequence

>rna6575 ID=rna6575|Name=rna6575|organism=Nannochloropsis gaditana|type=mRNA|length=633bp
ATGCCTTCATCCACTTCAAGGACCATCCTGAACGTCTGTTTATTACTCCT
GGTCGCTTTCGTGAGCGCTTCAGCTTTCTTCCTCCCTTCTTCCCGGGTCC
TCTCCACCGGCAGCAATCACGCTCTTCACAAACATGTCGCATCGCGGAGA
CCATTGCCTTCGTACGCCGCTTCCGAGGAAGGTGTAAAAGACACGGAATT
GATTGGGCCTACCGCACCTCCTGCCCCCGCGGTGGTGGAGAAGGCTGAGG
AAGACATGACGGAGGAAGAGAAAGCAATGAAGGCAAAGATGGATAAGATC
AAGGAGCTGAAAGCCAAGGAGGTGTTCCAAACACAGGACACGGGCGATTA
TGAGTGCCAGGTCTGCGGATGGCAGTACAAGGAGGAGAAGGGCTTTGGCC
CATATCCTGCCGGCACCGCCTTCGCCGCTCTGCCAGCCGACTTCAAATGC
CCGAATTGCAAAGCCGGAAAACCTGCCTTTAAGAGCATGACCAAGACCAT
TGCCGGCTTCAGTGATAACTCCAAATACGGCTTTGGCGGGAATAATTTGA
CGTCAGAACAAAAAGGTGGTTTGATCTTCGGCGGACTGTTTTTCTTCTTT
GTCCTTTTCCTGAGTGGATATCTCCTGGAATGA

protein sequence of rna6575

>rna6575-protein ID=rna6575-protein|Name=rna6575|organism=Nannochloropsis gaditana|type=polypeptide|length=236bp
MKKKNGQEIGRKGGMEARETLDFLSGAMRSFFYLLYLCIFFVVASINAFV
PSTPAPVPFPSTSSLTRNAQMLGRRHGRVLTQAKKRGGAASGPQSVTGES
LRGFTKVLDVGSELADAEGSQKAVGPLKDDKFLLLIRRKEGRVSAIDANC
GRCKFPLLKGKVSEDPSVEDDEDKGIITCPLCAVRFSLASGLVTGAQADN
VLQRVSASFFSKQIASGLKTYAAAAGTDGSVYAKLR

mRNA from alignment at CM002468.1:827306..829416+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6575 ID=rna6575|Name=rna6575|organism=Nannochloropsis gaditana|type=mRNA|length=2111bp|location=Sequence derived from alignment at CM002468.1:827306..829416+ (Nannochloropsis gaditana)
atgaaaaaaaagaatgGACAGGAAATAGGACGAAAAGGAGGCATGGAAGC
ACGTGAAACACTGGATTTTCTTTCGTTGAGATGAACGTGTGTGACACATG
TACACACAAGGTAACAAAAACAATACAAGGATCTTTTATGTCATGCTCGA
CGAAAAGGCCTGCAAATTTTCCAAGGACAACATATTTTCTTTCCGAAACG
TAGGGAGTAAGGTACAACCAGAACATCCCTCTACCTAGATTGCAATGATG
TCCCTCATCATAATCATAGAAAGGTACATATTCCAATGAAGAGGACAAGA
ATATCGCAGCCGAATCCACGCCCATACCGACAGCGCACGGAGACATAGAG
GAGACAGACACCAGTCCTTATATGCATGCATGAGACAGGCTATCGCTGGA
AAGATCGGGGTCCGGGCTCGGACGTGGTCACACCCCGATCAGCCCTCCCG
TGCAGATGTACAGTAAGCACACGTGCTGCCTTTAGGGGGGAAAGTTCATC
TGTATTGCAGTTGTCGTGATTACCCTCTATTCTAGAACCATTCCCCTTAA
AATTTATCGCACCCGCGAGGTCCCGCCTCAAGAGAAATGTCATCTTCCTG
CCGCTTCCTTGATAACGTGGGGACTGATGCAGAGGGCCTGAAAATCAATT
ATGAGTGAAAAGAATGCACTCAGGCATGCTTGTCCTGTGAATACGATTTT
GACTCTCATCTTATTTGACCATGAATAATCTATTACATTGTGTTGAAGTT
CGCCTGGTACGGAGATCTCACGAGGTTCGGCAGCTTAATCTCCATGATAC
CATCCATCACAATTTTAAACTTACCATAGGGGTGCCATGCGGTCCTTCTT
CTACCTCCTATACCTATGCATCTTCTTCGTCGTTGCTTCCATCAATGCCT
TTGTACCCTCCACTCCTGCTCCTGTACCTTTTCCTTCTACTTCCTCTTTG
ACACGTAACGCTCAAATGCTGGGACGTCGCCATGGGCGTGTCCTCACACA
GGTCTTTTAACAACTTTATCGCCTGCACTCGTGAATTCTTCCCTTAAATC
GTCTTGTGCTCTTCTTACTTGCATTCCATCTCAATCCAGGCCAAGAAACG
CGGTGGAGCAGCCTCGGGCCCGCAGAGCGTGACAGGGGAGTCTTTGAGAG
GGTTCACAAAGGTACTAAACAAAGGGGGTGGCACGACATACCGGGAAAGT
AAATATGTTGGACAATCACATCGGCATACTCGTCAAAAAATGGCCACTCC
CTCGTTTAAAGGCAAAAATGAGTGCTGAAGAGTGGAGATCGTTGCGTGTA
TGCTGGTATCACCAAGCTACCTTGTCCTCTTGGCTAGCGCGCTGTCTTCT
GTGTAGCCCTCAGAACCTCATGAAGTGCGCTCACTTTTGTGAACTTCTGT
AGGTTTTAGACGTGGGAAGCGAGCTGGCCGATGCTGAAGGGAGTCAGAAA
GCCGTCGGCCCTCTGAAGGACGACAAATTTCTTCTCCTTATCagacggaa
ggaagggcgagtCAGTGCAATCGACGCCAATTGTGGTAAGTGCCGTAAag
cgggaagaaaagaagggaaaattaaccctaaccctaacggAAGTCGGCAA
CTCATCTCTGCCCGTTATATGAATTTATCCGAGGTATGATGCTCGTTTAT
TGCGCTTAACgcactctctcctcctgaCGTGCATGGATTTTATATGGATC
CCTTATTCCTCTGAATGATGAGCCAGGCCGGTGCAAGTTCCCGCTCTTAA
AGGGCAAAGTCTCGGAAGACCCCAGtgtggaggatgacgaggacaaggga
aTCATCACCTGGTAATGCAACGTGGGTGTCCTCTCCTcggtcctcccctt
cctctctagTGCCTTTGCAGGTTCTGATTTTGGCATCCCTTTCGccacct
gcttccctcccacccaatttttttcctctcttccagTCCATTGTGCGCCG
TGCGTTTCTCCCTGGCCAGTGGTCTCGTCACGGGTGCTCAAGCCGACAAC
GTACTCCAGCgtgtctccgcctcctttttcaGCAAGCAGATCGCATCGGG
CCTCAAAACCTACGCCGCCGCAGCCGGCACGGACGGGAGTGTGTATGCGA
AGCTCCGGTAG

Coding sequence (CDS) from alignment at CM002468.1:827306..829416+

>rna6575 ID=rna6575|Name=rna6575|organism=Nannochloropsis gaditana|type=CDS|length=4266bp|location=Sequence derived from alignment at CM002468.1:827306..829416+ (Nannochloropsis gaditana)
atgaaaaaaaagaatgGACAGGAAATAGGACGAAAAGGAGGCATGGAAGC
ACGTGAAACACTGGATTTTCTTTCGGGTGCCATGCGGTCCTTCTTCTACC
TCCTATACCTATGCATCTTCTTCGTCGTTGCTTCCATCAATGCCTTTGTA
CCCTCCACTCCTGCTCCTGTACCTTTTCCTTCTACTTCCTCTTTGACACG
TAACGCTCAAATGCTGGGACGTCGCCATGGGCGTGTCCTCACACAGGCCA
AGAAACGCGGTGGAGCAGCCTCGGGCCCGCAGAGCGTGACAGGGGAGTCT
TTGAGAGGGTTCACAAAGGTTTTAGACGTGGGAAGCGAGCTGGCCGATGC
TGAAGGGAGTCAGAAAGCCGTCGGCCCTCTGAAGGACGACAAATTTCTTC
TCCTTATCagacggaaggaagggcgagtCAGTGCAATCGACGCCAATTGT
GGCCGGTGCAAGTTCCCGCTCTTAAAGGGCAAAGTCTCGGAAGACCCCAG
tgtggaggatgacgaggacaagggaaTCATCACCTGTCCATTGTGCGCCG
TGCGTTTCTCCCTGGCCAGTGGTCTCGTCACGGGTGCTCAAGCCGACAAC
GTACTCCAGCgtgtctccgcctcctttttcaGCAAGCAGATCGCATCGGG
CCTCAAAACCTACGCCGCCGCAGCCGGCACGGACGGGAGTGTGTATGCGA
AGCTCCGGTAGatgaaaaaaaagaatgGACAGGAAATAGGACGAAAAGGA
GGCATGGAAGCACGTGAAACACTGGATTTTCTTTCGGGTGCCATGCGGTC
CTTCTTCTACCTCCTATACCTATGCATCTTCTTCGTCGTTGCTTCCATCA
ATGCCTTTGTACCCTCCACTCCTGCTCCTGTACCTTTTCCTTCTACTTCC
TCTTTGACACGTAACGCTCAAATGCTGGGACGTCGCCATGGGCGTGTCCT
CACACAGGCCAAGAAACGCGGTGGAGCAGCCTCGGGCCCGCAGAGCGTGA
CAGGGGAGTCTTTGAGAGGGTTCACAAAGGTTTTAGACGTGGGAAGCGAG
CTGGCCGATGCTGAAGGGAGTCAGAAAGCCGTCGGCCCTCTGAAGGACGA
CAAATTTCTTCTCCTTATCagacggaaggaagggcgagtCAGTGCAATCG
ACGCCAATTGTGGCCGGTGCAAGTTCCCGCTCTTAAAGGGCAAAGTCTCG
GAAGACCCCAGtgtggaggatgacgaggacaagggaaTCATCACCTGTCC
ATTGTGCGCCGTGCGTTTCTCCCTGGCCAGTGGTCTCGTCACGGGTGCTC
AAGCCGACAACGTACTCCAGCgtgtctccgcctcctttttcaGCAAGCAG
ATCGCATCGGGCCTCAAAACCTACGCCGCCGCAGCCGGCACGGACGGGAG
TGTGTATGCGAAGCTCCGGTAGatgaaaaaaaagaatgGACAGGAAATAG
GACGAAAAGGAGGCATGGAAGCACGTGAAACACTGGATTTTCTTTCGGGT
GCCATGCGGTCCTTCTTCTACCTCCTATACCTATGCATCTTCTTCGTCGT
TGCTTCCATCAATGCCTTTGTACCCTCCACTCCTGCTCCTGTACCTTTTC
CTTCTACTTCCTCTTTGACACGTAACGCTCAAATGCTGGGACGTCGCCAT
GGGCGTGTCCTCACACAGGCCAAGAAACGCGGTGGAGCAGCCTCGGGCCC
GCAGAGCGTGACAGGGGAGTCTTTGAGAGGGTTCACAAAGGTTTTAGACG
TGGGAAGCGAGCTGGCCGATGCTGAAGGGAGTCAGAAAGCCGTCGGCCCT
CTGAAGGACGACAAATTTCTTCTCCTTATCagacggaaggaagggcgagt
CAGTGCAATCGACGCCAATTGTGGCCGGTGCAAGTTCCCGCTCTTAAAGG
GCAAAGTCTCGGAAGACCCCAGtgtggaggatgacgaggacaagggaaTC
ATCACCTGTCCATTGTGCGCCGTGCGTTTCTCCCTGGCCAGTGGTCTCGT
CACGGGTGCTCAAGCCGACAACGTACTCCAGCgtgtctccgcctcctttt
tcaGCAAGCAGATCGCATCGGGCCTCAAAACCTACGCCGCCGCAGCCGGC
ACGGACGGGAGTGTGTATGCGAAGCTCCGGTAGatgaaaaaaaagaatgG
ACAGGAAATAGGACGAAAAGGAGGCATGGAAGCACGTGAAACACTGGATT
TTCTTTCGGGTGCCATGCGGTCCTTCTTCTACCTCCTATACCTATGCATC
TTCTTCGTCGTTGCTTCCATCAATGCCTTTGTACCCTCCACTCCTGCTCC
TGTACCTTTTCCTTCTACTTCCTCTTTGACACGTAACGCTCAAATGCTGG
GACGTCGCCATGGGCGTGTCCTCACACAGGCCAAGAAACGCGGTGGAGCA
GCCTCGGGCCCGCAGAGCGTGACAGGGGAGTCTTTGAGAGGGTTCACAAA
GGTTTTAGACGTGGGAAGCGAGCTGGCCGATGCTGAAGGGAGTCAGAAAG
CCGTCGGCCCTCTGAAGGACGACAAATTTCTTCTCCTTATCagacggaag
gaagggcgagtCAGTGCAATCGACGCCAATTGTGGCCGGTGCAAGTTCCC
GCTCTTAAAGGGCAAAGTCTCGGAAGACCCCAGtgtggaggatgacgagg
acaagggaaTCATCACCTGTCCATTGTGCGCCGTGCGTTTCTCCCTGGCC
AGTGGTCTCGTCACGGGTGCTCAAGCCGACAACGTACTCCAGCgtgtctc
cgcctcctttttcaGCAAGCAGATCGCATCGGGCCTCAAAACCTACGCCG
CCGCAGCCGGCACGGACGGGAGTGTGTATGCGAAGCTCCGGTAGatgaaa
aaaaagaatgGACAGGAAATAGGACGAAAAGGAGGCATGGAAGCACGTGA
AACACTGGATTTTCTTTCGGGTGCCATGCGGTCCTTCTTCTACCTCCTAT
ACCTATGCATCTTCTTCGTCGTTGCTTCCATCAATGCCTTTGTACCCTCC
ACTCCTGCTCCTGTACCTTTTCCTTCTACTTCCTCTTTGACACGTAACGC
TCAAATGCTGGGACGTCGCCATGGGCGTGTCCTCACACAGGCCAAGAAAC
GCGGTGGAGCAGCCTCGGGCCCGCAGAGCGTGACAGGGGAGTCTTTGAGA
GGGTTCACAAAGGTTTTAGACGTGGGAAGCGAGCTGGCCGATGCTGAAGG
GAGTCAGAAAGCCGTCGGCCCTCTGAAGGACGACAAATTTCTTCTCCTTA
TCagacggaaggaagggcgagtCAGTGCAATCGACGCCAATTGTGGCCGG
TGCAAGTTCCCGCTCTTAAAGGGCAAAGTCTCGGAAGACCCCAGtgtgga
ggatgacgaggacaagggaaTCATCACCTGTCCATTGTGCGCCGTGCGTT
TCTCCCTGGCCAGTGGTCTCGTCACGGGTGCTCAAGCCGACAACGTACTC
CAGCgtgtctccgcctcctttttcaGCAAGCAGATCGCATCGGGCCTCAA
AACCTACGCCGCCGCAGCCGGCACGGACGGGAGTGTGTATGCGAAGCTCC
GGTAGatgaaaaaaaagaatgGACAGGAAATAGGACGAAAAGGAGGCATG
GAAGCACGTGAAACACTGGATTTTCTTTCGGGTGCCATGCGGTCCTTCTT
CTACCTCCTATACCTATGCATCTTCTTCGTCGTTGCTTCCATCAATGCCT
TTGTACCCTCCACTCCTGCTCCTGTACCTTTTCCTTCTACTTCCTCTTTG
ACACGTAACGCTCAAATGCTGGGACGTCGCCATGGGCGTGTCCTCACACA
GGCCAAGAAACGCGGTGGAGCAGCCTCGGGCCCGCAGAGCGTGACAGGGG
AGTCTTTGAGAGGGTTCACAAAGGTTTTAGACGTGGGAAGCGAGCTGGCC
GATGCTGAAGGGAGTCAGAAAGCCGTCGGCCCTCTGAAGGACGACAAATT
TCTTCTCCTTATCagacggaaggaagggcgagtCAGTGCAATCGACGCCA
ATTGTGGCCGGTGCAAGTTCCCGCTCTTAAAGGGCAAAGTCTCGGAAGAC
CCCAGtgtggaggatgacgaggacaagggaaTCATCACCTGTCCATTGTG
CGCCGTGCGTTTCTCCCTGGCCAGTGGTCTCGTCACGGGTGCTCAAGCCG
ACAACGTACTCCAGCgtgtctccgcctcctttttcaGCAAGCAGATCGCA
TCGGGCCTCAAAACCTACGCCGCCGCAGCCGGCACGGACGGGAGTGTGTA
TGCGAAGCTCCGGTAG

Synonyms

Publications