EWM24115.1, cds6559 (CDS) Nannochloropsis gaditana

Overview
NameEWM24115.1
Unique Namecds6559
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:827306..827379 +
Alignment locationCM002468.1:828135..828306 +
Alignment locationCM002468.1:828395..828466 +
Alignment locationCM002468.1:828708..828840 +
Alignment locationCM002468.1:829032..829116 +
Alignment locationCM002468.1:829242..829416 +

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Properties
Property NameValue
Protein idEWM24115.1
Productexpressed unknown protein
Orig transcript idgnl|cribi|Naga_100404g1.9936.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:827306..827379 +
CM002468.1supercontigCM002468.1:828135..828306 +
CM002468.1supercontigCM002468.1:828395..828466 +
CM002468.1supercontigCM002468.1:828708..828840 +
CM002468.1supercontigCM002468.1:829032..829116 +
CM002468.1supercontigCM002468.1:829242..829416 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
GO:00515372 iron, 2 sulfur cluster binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR017941Rieske_2Fe-2S
Homology
[Close]
BLAST of EWM24115.1 vs. NCBI_GenBank
Match: gi|585105452|gb|EWM24115.1| (expressed unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 477.248 bits (1227), Expect = 3.241e-170
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0 
Query:    1 MKKKNGQEIGRKGGMEARETLDFLSGAMRSFFYLLYLCIFFVVASINAFVPSTPAPVPFPSTSSLTRNAQMLGRRHGRVLTQAKKRGGAASGPQSVTGESLRGFTKVLDVGSELADAEGSQKAVGPLKDDKFLLLIRRKEGRVSAIDANCGRCKFPLLKGKVSEDPSVEDDEDKGIITCPLCAVRFSLASGLVTGAQADNVLQRVSASFFSKQIASGLKTYAAAAGTDGSVYAKLR 236
            MKKKNGQEIGRKGGMEARETLDFLSGAMRSFFYLLYLCIFFVVASINAFVPSTPAPVPFPSTSSLTRNAQMLGRRHGRVLTQAKKRGGAASGPQSVTGESLRGFTKVLDVGSELADAEGSQKAVGPLKDDKFLLLIRRKEGRVSAIDANCGRCKFPLLKGKVSEDPSVEDDEDKGIITCPLCAVRFSLASGLVTGAQADNVLQRVSASFFSKQIASGLKTYAAAAGTDGSVYAKLR
Sbjct:    1 MKKKNGQEIGRKGGMEARETLDFLSGAMRSFFYLLYLCIFFVVASINAFVPSTPAPVPFPSTSSLTRNAQMLGRRHGRVLTQAKKRGGAASGPQSVTGESLRGFTKVLDVGSELADAEGSQKAVGPLKDDKFLLLIRRKEGRVSAIDANCGRCKFPLLKGKVSEDPSVEDDEDKGIITCPLCAVRFSLASGLVTGAQADNVLQRVSASFFSKQIASGLKTYAAAAGTDGSVYAKLR 236
[Close]
BLAST of EWM24115.1 vs. NCBI_GenBank
Match: gi|553182047|ref|XP_005853669.1| (hypothetical protein NGA_0482400 [Nannochloropsis gaditana CCMP526] >gi|422295394|gb|EKU22693.1| hypothetical protein NGA_0482400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 422.165 bits (1084), Expect = 6.205e-149
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0 
Query:   28 MRSFFYLLYLCIFFVVASINAFVPSTPAPVPFPSTSSLTRNAQMLGRRHGRVLTQAKKRGGAASGPQSVTGESLRGFTKVLDVGSELADAEGSQKAVGPLKDDKFLLLIRRKEGRVSAIDANCGRCKFPLLKGKVSEDPSVEDDEDKGIITCPLCAVRFSLASGLVTGAQADNVLQRVSASFFSKQIASGLKTYAAAAGTDGSVYAKLR 236
            MRSFFYLLYLCIFFVVASINAFVPSTPAPVPFPSTSSLTRNAQMLGRRHGRVLTQAKKRGGAASGPQSVTGESLRGFTKVLDVGSELADAEGSQKAVGPLKDDKFLLLIRRKEGRVSAIDANCGRCKFPLLKGKVSEDPSVEDDEDKGIITCPLCAVRFSLASGLVTGAQADNVLQRVSASFFSKQIASGLKTYAAAAGTDGSVYAKLR
Sbjct:    1 MRSFFYLLYLCIFFVVASINAFVPSTPAPVPFPSTSSLTRNAQMLGRRHGRVLTQAKKRGGAASGPQSVTGESLRGFTKVLDVGSELADAEGSQKAVGPLKDDKFLLLIRRKEGRVSAIDANCGRCKFPLLKGKVSEDPSVEDDEDKGIITCPLCAVRFSLASGLVTGAQADNVLQRVSASFFSKQIASGLKTYAAAAGTDGSVYAKLR 209
[Close]
BLAST of EWM24115.1 vs. NCBI_GenBank
Match: gi|298713078|emb|CBJ48853.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 76.2554 bits (186), Expect = 3.204e-13
Identity = 61/187 (32.62%), Postives = 86/187 (45.99%), Query Frame = 0 
Query:   61 STSSLTRNAQMLGRRHGRVLTQAKKRGGAASGPQSVTGESLRGFTKVLDVGSELADAEGSQKAV-GPLKDDKFLLLIRRKEGRVSAIDANCGRCKFPLLKGKV--------SED--PSVEDDEDKGI-ITCPLCAVRFSLASGLVTGAQADNVLQRVSASFFSKQIASGLKTYAAAAGTDGSVYAKL 235
            ST SLT        R  R   +AK +  + S  Q     S   + +VLD  SEL    GS K V G  K +  +  +    G   A+   CGRCKFPL+ GKV        +ED  P VE D +  I I CPLC   F+L +G + G Q   + Q + +   S+  A  + T+ A   + G+V  ++
Sbjct:   32 STRSLTTMMMAKKNRRERRYAEAKNKKSSGSKQQPSGATSNAKWLQVLDSTSELEP--GSVKVVSGKYKGEDRVFTLAAYGGTYYAVSEACGRCKFPLINGKVKLLTGGGKAEDVKPGVEQDPEAEIAIACPLCGAMFNLRTGEIAGEQPKGLAQVLVSKVVSQTPAESITTHQAQVLSTGAVVVRV 216
The following BLAST results are available for this feature:
BLAST of EWM24115.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585105452|gb|EWM24115.1|3.241e-170100.00expressed unknown protein [Nannochloropsis gaditan... [more]
gi|553182047|ref|XP_005853669.1|6.205e-149100.00hypothetical protein NGA_0482400 [Nannochloropsis ... [more]
gi|298713078|emb|CBJ48853.1|3.204e-1332.62expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6575rna6575Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications