EWM24118.1, cds6557 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM24118.1 vs. NCBI_GenBank
Match: gi|585105455|gb|EWM24118.1| (hypothetical protein Naga_100404g3 [Nannochloropsis gaditana]) HSP 1 Score: 344.354 bits (882), Expect = 7.032e-120 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 Query: 1 MIFRVTSQTGTHESPRTLILIRVPLASRAHVFEQRTRHLFTASMSLVALKRTVRPAATLCGRRAIPARNFAAGGHEIESEDHQEYAYVNPKWFEGLEEGIPVEHPLKMGLLFPPKFTGKNAPTAEEYSSGTVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPEEDH 168 MIFRVTSQTGTHESPRTLILIRVPLASRAHVFEQRTRHLFTASMSLVALKRTVRPAATLCGRRAIPARNFAAGGHEIESEDHQEYAYVNPKWFEGLEEGIPVEHPLKMGLLFPPKFTGKNAPTAEEYSSGTVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPEEDH Sbjct: 1 MIFRVTSQTGTHESPRTLILIRVPLASRAHVFEQRTRHLFTASMSLVALKRTVRPAATLCGRRAIPARNFAAGGHEIESEDHQEYAYVNPKWFEGLEEGIPVEHPLKMGLLFPPKFTGKNAPTAEEYSSGTVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPEEDH 168
BLAST of EWM24118.1 vs. NCBI_GenBank
Match: gi|553182032|ref|XP_005853666.1| (hypothetical protein NGA_0482100 [Nannochloropsis gaditana CCMP526] >gi|422295391|gb|EKU22690.1| hypothetical protein NGA_0482100 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 258.84 bits (660), Expect = 8.626e-87 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 Query: 44 MSLVALKRTVRPAATLCGRRAIPARNFAAGGHEIESEDHQEYAYVNPKWFEGLEEGIPVEHPLKMGLLFPPKFTGKNAPTAEEYSSGTVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPEEDH 168 MSLVALKRTVRPAATLCGRRAIPARNFAAGGHEIESEDHQEYAYVNPKWFEGLEEGIPVEHPLKMGLLFPPKFTGKNAPTAEEYSSGTVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPEEDH Sbjct: 1 MSLVALKRTVRPAATLCGRRAIPARNFAAGGHEIESEDHQEYAYVNPKWFEGLEEGIPVEHPLKMGLLFPPKFTGKNAPTAEEYSSGTVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPEEDH 125
BLAST of EWM24118.1 vs. NCBI_GenBank
Match: gi|224007797|ref|XP_002292858.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971720|gb|EED90054.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 58.5362 bits (140), Expect = 2.954e-7 Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0 Query: 131 TVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVE 162 V VP+V DSLEWTLSSPPPLHQF+EPP+IVE Sbjct: 135 NVVVPLVTDSLEWTLSSPPPLHQFEEPPLIVE 166
BLAST of EWM24118.1 vs. NCBI_GenBank
Match: gi|397623527|gb|EJK67031.1| (hypothetical protein THAOC_11983, partial [Thalassiosira oceanica]) HSP 1 Score: 57.3806 bits (137), Expect = 3.830e-7 Identity = 24/32 (75.00%), Postives = 29/32 (90.62%), Query Frame = 0 Query: 131 TVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVE 162 V VP++ DSLEWTLSSPPPLHQF+EPP++VE Sbjct: 80 NVVVPLITDSLEWTLSSPPPLHQFEEPPLMVE 111
BLAST of EWM24118.1 vs. NCBI_GenBank
Match: gi|299470844|emb|CBN78667.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 54.299 bits (129), Expect = 7.855e-7 Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0 Query: 131 TVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPE 165 VKV ++ DSLEW LSSPPP+HQFDEPPI+VE E Sbjct: 49 VVKV-VLADSLEWALSSPPPIHQFDEPPIVVEIAE 82 The following BLAST results are available for this feature:
BLAST of EWM24118.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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