rna6573, rna6573 (mRNA) Nannochloropsis gaditana

Overview
Namerna6573
Unique Namerna6573
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length875
Alignment locationCM002468.1:823558..825331 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100404g3.9939.mrna
Orig protein idgnl|cribi|Naga_100404g3.9939
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:823558..825331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100404g3gene6352Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6573rna6573-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24118.1cds6557Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6573 ID=rna6573|Name=rna6573|organism=Nannochloropsis gaditana|type=mRNA|length=875bp
ATGCTACGCGATTGCCTGGAATTTAGACCGGGCTGCTTCTTCCCGCTCCT
CATAGTCCGGGGACGCAATTTCATGCGCCACGTAAGTTTGTCCGTTTTTC
TAGTCCACTACGTCATTGCAAGTATTTCCGCTTCGTGGGCCGGGCAAATA
GCTGAAAAGGCAGGGGAATTCCTAGAAAACTCCTTACAAATGGGACAAGG
GATGGCCACAGGAAAACCATTCGGGGAGTCCGCGGCTAAAGTTGTGAGCA
AGGTATTTTCTACGGAAAGTGCCAACGTCAAGGCCTCATGCTCGTGGGGT
CAGGAGGTTGCTACTTTTGCCGCTGGATGCTTTTGGTCAGTCGAGCTTTC
TTTTCAACGAGTCCCTGGGGTGGCCTCCACCCGTGTAGGGTATACAGGGG
GAAGCGTGCCACACCCTTCGTATAAAGAGGTTTGCACAGGGAGGACTGGA
CATGCTGAGGCTGTGGAGATAAAATTCGATCCTTCCATAGAAGGACAGGC
AGGGAAACGACCGGGGGACGCAGTATCGTTCGGCGATTTTTTATCATTCG
CCCGAGCAGAAATCACAAGCTGAAGCGGCCATTAAGCAAGAGCAAAAGCG
CCGGTCGATGCCAATTGTGACGCAACTTGTGCCTGCAACGACATTCTACG
AGGCCGAGACTTACCACCAGCAATACCTGGAGAAGGGGGGTCAGTGCGCG
CGAAAGGGAGATTTAACTCCGATTCGATGCTACGGCTGAGAAGTACATGT
TAAAGACAAAATGACCGCAAGGCAGAGAGGGGTTGATATATTGATTTCGG
GGGAAAATGTGAGCGTGGGATGCGACAAAAGACGGAAAATTAAGGGAAGA
ACAAATGAAGCTATGCGTCAGCTAT
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protein sequence of rna6573

>rna6573-protein ID=rna6573-protein|Name=rna6573|organism=Nannochloropsis gaditana|type=polypeptide|length=168bp
MIFRVTSQTGTHESPRTLILIRVPLASRAHVFEQRTRHLFTASMSLVALK
RTVRPAATLCGRRAIPARNFAAGGHEIESEDHQEYAYVNPKWFEGLEEGI
PVEHPLKMGLLFPPKFTGKNAPTAEEYSSGTVKVPIVVDSLEWTLSSPPP
LHQFDEPPIIVEFPEEDH
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mRNA from alignment at CM002468.1:823558..825331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6573 ID=rna6573|Name=rna6573|organism=Nannochloropsis gaditana|type=mRNA|length=1774bp|location=Sequence derived from alignment at CM002468.1:823558..825331- (Nannochloropsis gaditana)
TGGTGGATGAAGTTGAGGCTGTCTGTCGTGTTTGTGATTTGTGTCCATGG
TGCATAGCGGCATTTAGGACGAGTGGGGCGGCCTTGCAATGATTTTTAGG
GTGACTTCCCAAACGGGGACACATGAATCCCCTAGGACTCTTATACTCAT
TCGCGTTCCTCTCGCGTCCCGCGCACACGTCTTCGAACAGCGTACGCGAC
ATCTCTTCACAGCGAGTATGTCTCTGGTGGCTTTAAAGCGTACGGTCCGC
CCGGCCGCTACCCTTTGTGGTAAGTGCCCTTTTCTTGAGGGCAAGCAGAG
AGGGAGGAAGTGAAGGAGAGAGAGGCGCTTACGACCGCTCTTGCCCCGTC
ATGTTCGCTACGTGCAAATCGAATAACGCAATATCTGTGTAAGATCTCAT
TTTATGGTGGTATGGCTGCTCTACTGGTGCCTGCCCCTGATAATATCCTC
CTCCTCAACCATCCCCCATTCTCGCGCCTGCACGCAGGTCGCCGCGCCAT
CCCCGCGCGCAATTTTGCCGCCGGAGGACATGAAATCGAATCAGAAGATC
ACCAAGAATACGCATACGTTAACCCCAAGTGGTTTGAGGGTCTTGAGGAG
GGCATTCCTGTGGAGCATCCGCTGAAGGTAACGAGAGGAAGGAAGGGGCA
TCCTTTGAGGATTGAGTGTTGTGTTGAGTGCTCGAATGTCAAATGCGTCA
ACGAATCCACCCCCTTCTTTTTAGACTCTGCTGGATGCTTGCCCTTGGTT
AGGAGTTAGAAGCGCCATCTTTTTGGTCTCAACATATACATTTTCTTCAT
CCACGCTTTGCCTTCCTCACGTAGATGGGCCTGCTCTTTCCCCCGAAGTT
CACGGGCAAAAACGCCCCCACTGCTGAGGAGTATTCCAGCGGAACGGTAA
GGTTCTGACGGGCGAAGGGATTAAGCCCGGAGTACTTTGCCAGGCCACGT
CTCTCTCTGTGCCGCCTGAGCGTCTAATGTCGCCCTTTTTGGCTTACTGT
ATCTGTTTGTTTGTAATTAAACCCGGTCGTTCAATGTTACAATCTTCTCA
GTCTCTTTGGACGGTCCAGTTCTCGATGGACATGAAGAATGCGGAATGAA
AGCGTTCGATTCCTCTGTATCTCAACTCTCCTTTTAAAATACACACACGC
TATCTATCTTGTACACGCCGGCATGTACCTTTCAGGTCAAAGTTCCCATC
GTGGTCGACTCCCTCGAGTGGACCCTCTCCTCTCCTCCCCCCCTCCATCA
GTTTGACGAGCCTCCCATCATTGTCGAGTTCCCCGAGGAGGATCACTGAT
CGCTTTGTCCTCGCAGTCTTCCCTCTCCTCCTCCTGCTCCATCGTGGTCG
GGCCCGGGGGATGCAAAGGGAACAGGTCTGCCGGCTGAAGTTGCGTGGAT
AGGGGAGATTTTTGTCATAATATACACCGTGGGAAAGCTGGGTAAAAGGG
ACTGCAAGGAGGATCGAAGCTGGAAAGGCTCAAAGAGAGTTGGCCTTCGG
ATGGATGGCCGTGGGGTAGGCACAGAGGGGAAAAGAGGCAGGATTGGAAA
GAATGGACTGCATTGGAAGACGATGTTGATGCCGTACATTTCTTTGCGAG
AAATCGCTTAGTAAGGAAGCGAGTTTCTGTGACTAGAAAATGATGAACTT
GCTCCTGACTTTGACAGATGATTAAGCCTTGCTGATCAATGTTGATGTGC
AATACAGCGACTGTCTCTAGGAAATTGCATGCATTTATGTTCTAGTCAAA
ACATGTTGCCATTTCACGCCCTCC
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Coding sequence (CDS) from alignment at CM002468.1:823558..825331-

>rna6573 ID=rna6573|Name=rna6573|organism=Nannochloropsis gaditana|type=CDS|length=2028bp|location=Sequence derived from alignment at CM002468.1:823558..825331- (Nannochloropsis gaditana)
GTCAAAGTTCCCATCGTGGTCGACTCCCTCGAGTGGACCCTCTCCTCTCC
TCCCCCCCTCCATCAGTTTGACGAGCCTCCCATCATTGTCGAGTTCCCCG
AGGAGGATCACTGAATGGGCCTGCTCTTTCCCCCGAAGTTCACGGGCAAA
AACGCCCCCACTGCTGAGGAGTATTCCAGCGGAACGGTCGCCGCGCCATC
CCCGCGCGCAATTTTGCCGCCGGAGGACATGAAATCGAATCAGAAGATCA
CCAAGAATACGCATACGTTAACCCCAAGTGGTTTGAGGGTCTTGAGGAGG
GCATTCCTGTGGAGCATCCGCTGAAGATGATTTTTAGGGTGACTTCCCAA
ACGGGGACACATGAATCCCCTAGGACTCTTATACTCATTCGCGTTCCTCT
CGCGTCCCGCGCACACGTCTTCGAACAGCGTACGCGACATCTCTTCACAG
CGAGTATGTCTCTGGTGGCTTTAAAGCGTACGGTCCGCCCGGCCGCTACC
CTTTGTGGTCAAAGTTCCCATCGTGGTCGACTCCCTCGAGTGGACCCTCT
CCTCTCCTCCCCCCCTCCATCAGTTTGACGAGCCTCCCATCATTGTCGAG
TTCCCCGAGGAGGATCACTGAATGGGCCTGCTCTTTCCCCCGAAGTTCAC
GGGCAAAAACGCCCCCACTGCTGAGGAGTATTCCAGCGGAACGGTCGCCG
CGCCATCCCCGCGCGCAATTTTGCCGCCGGAGGACATGAAATCGAATCAG
AAGATCACCAAGAATACGCATACGTTAACCCCAAGTGGTTTGAGGGTCTT
GAGGAGGGCATTCCTGTGGAGCATCCGCTGAAGATGATTTTTAGGGTGAC
TTCCCAAACGGGGACACATGAATCCCCTAGGACTCTTATACTCATTCGCG
TTCCTCTCGCGTCCCGCGCACACGTCTTCGAACAGCGTACGCGACATCTC
TTCACAGCGAGTATGTCTCTGGTGGCTTTAAAGCGTACGGTCCGCCCGGC
CGCTACCCTTTGTGGTCAAAGTTCCCATCGTGGTCGACTCCCTCGAGTGG
ACCCTCTCCTCTCCTCCCCCCCTCCATCAGTTTGACGAGCCTCCCATCAT
TGTCGAGTTCCCCGAGGAGGATCACTGAATGGGCCTGCTCTTTCCCCCGA
AGTTCACGGGCAAAAACGCCCCCACTGCTGAGGAGTATTCCAGCGGAACG
GTCGCCGCGCCATCCCCGCGCGCAATTTTGCCGCCGGAGGACATGAAATC
GAATCAGAAGATCACCAAGAATACGCATACGTTAACCCCAAGTGGTTTGA
GGGTCTTGAGGAGGGCATTCCTGTGGAGCATCCGCTGAAGATGATTTTTA
GGGTGACTTCCCAAACGGGGACACATGAATCCCCTAGGACTCTTATACTC
ATTCGCGTTCCTCTCGCGTCCCGCGCACACGTCTTCGAACAGCGTACGCG
ACATCTCTTCACAGCGAGTATGTCTCTGGTGGCTTTAAAGCGTACGGTCC
GCCCGGCCGCTACCCTTTGTGGTCAAAGTTCCCATCGTGGTCGACTCCCT
CGAGTGGACCCTCTCCTCTCCTCCCCCCCTCCATCAGTTTGACGAGCCTC
CCATCATTGTCGAGTTCCCCGAGGAGGATCACTGAATGGGCCTGCTCTTT
CCCCCGAAGTTCACGGGCAAAAACGCCCCCACTGCTGAGGAGTATTCCAG
CGGAACGGTCGCCGCGCCATCCCCGCGCGCAATTTTGCCGCCGGAGGACA
TGAAATCGAATCAGAAGATCACCAAGAATACGCATACGTTAACCCCAAGT
GGTTTGAGGGTCTTGAGGAGGGCATTCCTGTGGAGCATCCGCTGAAGATG
ATTTTTAGGGTGACTTCCCAAACGGGGACACATGAATCCCCTAGGACTCT
TATACTCATTCGCGTTCCTCTCGCGTCCCGCGCACACGTCTTCGAACAGC
GTACGCGACATCTCTTCACAGCGAGTATGTCTCTGGTGGCTTTAAAGCGT
ACGGTCCGCCCGGCCGCTACCCTTTGTG
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Synonyms
Publications