EWM24118.1, cds6557 (CDS) Nannochloropsis gaditana

Overview
NameEWM24118.1
Unique Namecds6557
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:825063..825243 -
Alignment locationCM002468.1:824705..824844 -
Alignment locationCM002468.1:824436..824507 -
Alignment locationCM002468.1:824033..824146 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24118.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100404g3.9939.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:825063..825243 -
CM002468.1supercontigCM002468.1:824705..824844 -
CM002468.1supercontigCM002468.1:824436..824507 -
CM002468.1supercontigCM002468.1:824033..824146 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24118.1 vs. NCBI_GenBank
Match: gi|585105455|gb|EWM24118.1| (hypothetical protein Naga_100404g3 [Nannochloropsis gaditana])

HSP 1 Score: 344.354 bits (882), Expect = 7.032e-120
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
Query:    1 MIFRVTSQTGTHESPRTLILIRVPLASRAHVFEQRTRHLFTASMSLVALKRTVRPAATLCGRRAIPARNFAAGGHEIESEDHQEYAYVNPKWFEGLEEGIPVEHPLKMGLLFPPKFTGKNAPTAEEYSSGTVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPEEDH 168
            MIFRVTSQTGTHESPRTLILIRVPLASRAHVFEQRTRHLFTASMSLVALKRTVRPAATLCGRRAIPARNFAAGGHEIESEDHQEYAYVNPKWFEGLEEGIPVEHPLKMGLLFPPKFTGKNAPTAEEYSSGTVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPEEDH
Sbjct:    1 MIFRVTSQTGTHESPRTLILIRVPLASRAHVFEQRTRHLFTASMSLVALKRTVRPAATLCGRRAIPARNFAAGGHEIESEDHQEYAYVNPKWFEGLEEGIPVEHPLKMGLLFPPKFTGKNAPTAEEYSSGTVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPEEDH 168          
BLAST of EWM24118.1 vs. NCBI_GenBank
Match: gi|553182032|ref|XP_005853666.1| (hypothetical protein NGA_0482100 [Nannochloropsis gaditana CCMP526] >gi|422295391|gb|EKU22690.1| hypothetical protein NGA_0482100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 258.84 bits (660), Expect = 8.626e-87
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
Query:   44 MSLVALKRTVRPAATLCGRRAIPARNFAAGGHEIESEDHQEYAYVNPKWFEGLEEGIPVEHPLKMGLLFPPKFTGKNAPTAEEYSSGTVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPEEDH 168
            MSLVALKRTVRPAATLCGRRAIPARNFAAGGHEIESEDHQEYAYVNPKWFEGLEEGIPVEHPLKMGLLFPPKFTGKNAPTAEEYSSGTVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPEEDH
Sbjct:    1 MSLVALKRTVRPAATLCGRRAIPARNFAAGGHEIESEDHQEYAYVNPKWFEGLEEGIPVEHPLKMGLLFPPKFTGKNAPTAEEYSSGTVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPEEDH 125          
BLAST of EWM24118.1 vs. NCBI_GenBank
Match: gi|224007797|ref|XP_002292858.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971720|gb|EED90054.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 58.5362 bits (140), Expect = 2.954e-7
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0
Query:  131 TVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVE 162
             V VP+V DSLEWTLSSPPPLHQF+EPP+IVE
Sbjct:  135 NVVVPLVTDSLEWTLSSPPPLHQFEEPPLIVE 166          
BLAST of EWM24118.1 vs. NCBI_GenBank
Match: gi|397623527|gb|EJK67031.1| (hypothetical protein THAOC_11983, partial [Thalassiosira oceanica])

HSP 1 Score: 57.3806 bits (137), Expect = 3.830e-7
Identity = 24/32 (75.00%), Postives = 29/32 (90.62%), Query Frame = 0
Query:  131 TVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVE 162
             V VP++ DSLEWTLSSPPPLHQF+EPP++VE
Sbjct:   80 NVVVPLITDSLEWTLSSPPPLHQFEEPPLMVE 111          
BLAST of EWM24118.1 vs. NCBI_GenBank
Match: gi|299470844|emb|CBN78667.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 54.299 bits (129), Expect = 7.855e-7
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0
Query:  131 TVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPE 165
             VKV ++ DSLEW LSSPPP+HQFDEPPI+VE  E
Sbjct:   49 VVKV-VLADSLEWALSSPPPIHQFDEPPIVVEIAE 82          
The following BLAST results are available for this feature:
BLAST of EWM24118.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585105455|gb|EWM24118.1|7.032e-120100.00hypothetical protein Naga_100404g3 [Nannochloropsi... [more]
gi|553182032|ref|XP_005853666.1|8.626e-87100.00hypothetical protein NGA_0482100 [Nannochloropsis ... [more]
gi|224007797|ref|XP_002292858.1|2.954e-781.25predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397623527|gb|EJK67031.1|3.830e-775.00hypothetical protein THAOC_11983, partial [Thalass... [more]
gi|299470844|emb|CBN78667.1|7.855e-771.43conserved unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6573rna6573Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications