EWM24130.1, cds6543 (CDS) Nannochloropsis gaditana

Overview
NameEWM24130.1
Unique Namecds6543
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:796325..797181 -

Link to JBrowse

Properties
Property NameValue
Start range796325
Start range.
Protein idEWM24130.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_102424g1.3789.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:796325..797181 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006289nucleotide-excision repair
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003684damaged DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR004583DNA_repair_Rad4
Homology
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BLAST of EWM24130.1 vs. NCBI_GenBank
Match: gi|585105483|gb|EWM24130.1| (hypothetical protein Naga_102424g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 560.066 bits (1442), Expect = 0.000e+0
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0 
Query:    1 MEWEEPDDLNLPPVPLDEKWRDEEEDEEEDEEEEELRRFLQSEESDGLLITLESEKRQEKAGTGGKKMSSKKDTRRTRKELWRDFHIHTAHLALLTQRTRLLSTHASHPSLLAASTAALPPALRRGLSQGPTLLGLQRLSRWFQDTFTQLSDAHLREEEGKEGASPPELLSALEAKEGSGAVLVQILLAMLRGVGAKARLVCPLSPRSYQHPPYLLRRRREKGRAVDLTEEGGKGGTKAEGKGEKRKIRRLLASKEGARPLPGCGVWVEVFVRKGGREGGRTGGE 285
            MEWEEPDDLNLPPVPLDEKWRDEEEDEEEDEEEEELRRFLQSEESDGLLITLESEKRQEKAGTGGKKMSSKKDTRRTRKELWRDFHIHTAHLALLTQRTRLLSTHASHPSLLAASTAALPPALRRGLSQGPTLLGLQRLSRWFQDTFTQLSDAHLREEEGKEGASPPELLSALEAKEGSGAVLVQILLAMLRGVGAKARLVCPLSPRSYQHPPYLLRRRREKGRAVDLTEEGGKGGTKAEGKGEKRKIRRLLASKEGARPLPGCGVWVEVFVRKGGREGGRTGGE
Sbjct:    1 MEWEEPDDLNLPPVPLDEKWRDEEEDEEEDEEEEELRRFLQSEESDGLLITLESEKRQEKAGTGGKKMSSKKDTRRTRKELWRDFHIHTAHLALLTQRTRLLSTHASHPSLLAASTAALPPALRRGLSQGPTLLGLQRLSRWFQDTFTQLSDAHLREEEGKEGASPPELLSALEAKEGSGAVLVQILLAMLRGVGAKARLVCPLSPRSYQHPPYLLRRRREKGRAVDLTEEGGKGGTKAEGKGEKRKIRRLLASKEGARPLPGCGVWVEVFVRKGGREGGRTGGE 285
The following BLAST results are available for this feature:
BLAST of EWM24130.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105483|gb|EWM24130.1|0.000e+0100.00hypothetical protein Naga_102424g1, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6559rna6559Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications