EWM24147.1, cds6528 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24147.1 vs. NCBI_GenBank
Match: gi|585105509|gb|EWM24147.1| (Modifier of rudimentary, Modr, partial [Nannochloropsis gaditana]) HSP 1 Score: 321.627 bits (823), Expect = 3.647e-111 Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query: 1 LLPPSLLSASVEELNKLLTDEVAFSVFLSNLREVKECNRQLEAIRRTNADVARETLEKRSAVTALREEVKQTLDICKDIEKAYKEKVKGAGGGTEGGVDGVCHLLERRVGESERGSEECARAFVAGEKPLEAWQFEYLKERKLFHERSAKLEKIQRVRSEGR 162
LLPPSLLSASVEELNKLLTDEVAFSVFLSNLREVKECNRQLEAIRRTNADVARETLEKRSAVTALREEVKQTLDICKDIEKAYKEKVKGAGGGTEGGVDGVCHLLERRVGESERGSEECARAFVAGEKPLEAWQFEYLKERKLFHERSAKLEKIQRVRSEGR
Sbjct: 1 LLPPSLLSASVEELNKLLTDEVAFSVFLSNLREVKECNRQLEAIRRTNADVARETLEKRSAVTALREEVKQTLDICKDIEKAYKEKVKGAGGGTEGGVDGVCHLLERRVGESERGSEECARAFVAGEKPLEAWQFEYLKERKLFHERSAKLEKIQRVRSEGR 162
BLAST of EWM24147.1 vs. NCBI_GenBank
Match: gi|298705741|emb|CBJ49049.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 67.0106 bits (162), Expect = 4.321e-10 Identity = 47/151 (31.13%), Postives = 78/151 (51.66%), Query Frame = 0
Query: 10 SVEELNKLLTDEVAFSVFLSNLREVKECNRQLEAIRRTNADVARETLEKRSAVTALREEVKQTLDICKDIEKAYKEKVKGAGGGTEGGVDGVCHLLERRVGESER----GSEECARAFVAGEKPLEAWQFEYLKERKLFHERSAKLEKIQR 156
S E+LN+LL DE A L + V +R+ N + AR TL K+ A + LREE ++ K ++ +Y++K G G G D ++ +RV + + SE+ A F+ P + + E+LKER+ +H +AK+E ++R
Sbjct: 224 STEKLNRLLGDESARQALLLGMTNVVRMKDLRTDVRKGNVETARLTLAKQDAASVLREEGEKIKAELKALQTSYEDKAHGGGKNMGGTAD---QMILKRVKHASKMADTSSEQVATDFLEKRVPTQDFLDEFLKERQRYHMLAAKIECMKR 371
BLAST of EWM24147.1 vs. NCBI_GenBank
Match: gi|661179003|emb|CDH58215.1| (predicted protein [Lichtheimia corymbifera JMRC:FSU:9682]) HSP 1 Score: 63.929 bits (154), Expect = 4.142e-9 Identity = 42/153 (27.45%), Postives = 85/153 (55.56%), Query Frame = 0
Query: 5 SLLSASVEELNKLLTDEVAFSVFLSNLREVKECNRQLEAIRRTNADVARETLEKRSAVTALREEVKQTLDICKDIEKAYKEKVKGAGGGTEGGVDGVCHL-LERRVGESERGSEECARAFVAGEKPLEAWQFEYLKERKLFHERSAKLEKIQR 156
S++S S++EL +LL+++VAF +F ++L V+ E +R N ++A + L + S++ LR++VK+ + + ++EK K L+ + ES+ SE A++F+ G + + ++ + RK++H R++KLE+ Q+
Sbjct: 155 SIVSRSMDELEELLSNDVAFELFFNSLERVQNMKTVQEELRNGNVNLANKNLTQESSLQQLRDQVKELDGEYRQLRAQFEEKEKQQNDAFNRFSPATMMTRLKASIHESDELSESVAQSFLDGNLDHDGFVKQFRELRKVYHIRASKLERSQK 307
BLAST of EWM24147.1 vs. NCBI_GenBank
Match: gi|671685260|emb|CDS14276.1| (hypothetical protein LRAMOSA06446 [Lichtheimia ramosa]) HSP 1 Score: 63.5438 bits (153), Expect = 6.917e-9 Identity = 41/153 (26.80%), Postives = 86/153 (56.21%), Query Frame = 0
Query: 5 SLLSASVEELNKLLTDEVAFSVFLSNLREVKECNRQLEAIRRTNADVARETLEKRSAVTALREEVKQTLDICKDIEKAYKEKVKGAGGGTEGGVDGVCHL-LERRVGESERGSEECARAFVAGEKPLEAWQFEYLKERKLFHERSAKLEKIQR 156
S++S S++EL +LL+++VAF +F ++L V+ E +R N ++A + L + S++ LR++V++ + + ++EK K + L+ + ES+ SE A++F+ G + + ++ + RK++H R++KLE+ Q+
Sbjct: 149 SIVSRSMDELEELLSNDVAFELFFNSLERVQNMKTVQEELRNGNVNLANKNLAQESSLQQLRDQVRELDSEYRQLRSQFEEKEKQQRDAFDRFSSATMMTRLKASIHESDELSESVAQSFLDGNLDHDGFVKQFRELRKVYHIRASKLERSQK 301
BLAST of EWM24147.1 vs. NCBI_GenBank
Match: gi|552916618|gb|ESA01811.1| (hypothetical protein GLOINDRAFT_337762 [Rhizophagus irregularis DAOM 181602] >gi|595447472|gb|EXX57159.1| hypothetical protein RirG_209700 [Rhizophagus irregularis DAOM 197198w] >gi|595447474|gb|EXX57161.1| hypothetical protein RirG_209700 [Rhizophagus irregularis DAOM 197198w]) HSP 1 Score: 60.4622 bits (145), Expect = 2.691e-8 Identity = 42/154 (27.27%), Postives = 80/154 (51.95%), Query Frame = 0
Query: 4 PSLLSASVEELNKLLTDEVAFSVFLSNLREVKECNRQLEAIRRTNADVARETLEKRSAVTALREEVKQTLDICKDIEKAYKEKVKGAGGGTEGGVDGVCHL-LERRVGESERGSEECARAFVAGEKPLEAWQFEYLKERKLFHERSAKLEKIQR 156
P LL+ S EEL LL +V F F+ N+ +V+ + +R N ++AR+ L + + LR V K+I ++EK+K + + L+ +S+ SE+ A++F+ GE ++ + + + RK++H R+AK+E++ +
Sbjct: 28 PILLNKSKEELEDLLNSDVIFDTFMENVEQVRNMKNLQDEMRMGNENLARKILSQEEELIKLRNSVDGQEKGLKEIYSNFEEKLKVQQEVLKRFSPSILITKLKSETQQSDDLSEQMAKSFLDGELEVDDFLKHFREVRKVYHLRNAKVERVSK 181
BLAST of EWM24147.1 vs. NCBI_GenBank
Match: gi|1183327253|gb|ORX57011.1| (hypothetical protein DM01DRAFT_1334561 [Hesseltinella vesiculosa]) HSP 1 Score: 59.3066 bits (142), Expect = 1.772e-7 Identity = 47/166 (28.31%), Postives = 85/166 (51.20%), Query Frame = 0
Query: 3 PPS----LLSASVEELNKLLTDEVAFSVFL------SNLREVKE--CNRQLEAIRRTNADVARETLEKRSAVTALREEVKQTLDICKDIEKAYKEKVKGAGGGTEGGVDGVCHLLERRVGESERGSEECARAFVAGEKPLEAWQFEYLKERKLFHERSAKLEKIQR 156
PP+ +++ S EE+N+LL+++ AF +F N++ VKE CN E + R N E + RS VT++ +E ++ + E+ ++ T + L+ V ES+ SE A++F+ G E++ ++ RK++H R++ LEK+QR
Sbjct: 129 PPAEYLMIMNKSPEEINELLSNDRAFEIFFHSLDRVQNMKTVKEELCNGN-ENLARKNLSYEEELIRLRSQVTSMNKEYQELRSKVSEKERQQQDAFNRFSSST------IMTRLKAGVNESDDLSESVAQSFLDGSLDHESFVKQFRDLRKVYHLRASNLEKLQR 287
BLAST of EWM24147.1 vs. NCBI_GenBank
Match: gi|934154069|gb|KPM04749.1| (vacuolar protein sorting-associated protein 37B-like protein [Sarcoptes scabiei]) HSP 1 Score: 58.5362 bits (140), Expect = 1.823e-7 Identity = 40/151 (26.49%), Postives = 76/151 (50.33%), Query Frame = 0
Query: 7 LSASVEELNKLLTDEV--AFSVFLSNLREVKECNRQLEAIRRTNADVARETLEKRSAVTALREEVKQTLDICKDIEKAY-KEKVKGAGGGTEGGVDGVCHLLERRVGESERGSEECARAFVAGEKPLEAWQFEYLKERKLFHERSAKLEKI 154
S + EEL ++L D F+ ++ ++K R+ + + N ++A L + A R+E+ + L+ C+ ++ K K K + +D L++ + E+E S+E A +F+ E +E + E+ ++RKLFH R K EK+
Sbjct: 17 FSKTDEELKQILDDTSNEVIDSFIKDMAQIKSLERERDKLIEQNKEIAERNLSFETTYRASRQELMKALEECQSLKNDMNKTKSKIKEFNRQNSLDTTLALMQAAMAEAEENSDEVANSFLKKEISIEEFLREFHEKRKLFHARRIKTEKM 167 The following BLAST results are available for this feature:
BLAST of EWM24147.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 7
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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