rna6544, rna6544 (mRNA) Nannochloropsis gaditana

Overview
Namerna6544
Unique Namerna6544
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1308
Alignment locationCM002468.1:761816..762517 -

Link to JBrowse

Properties
Property NameValue
ProductModifier of rudimentary, Modr
Orig transcript idgnl|cribi|Naga_100426g6.9609.mrna
Orig protein idgnl|cribi|Naga_100426g6.9609
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:761816..762517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100426g6gene6322Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24147.1cds6528Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6544rna6544-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6544 ID=rna6544|Name=rna6544|organism=Nannochloropsis gaditana|type=mRNA|length=1308bp
ATGGACATCGCCATGGAAGGAGGCAGCAAGGACGCAGGAGGCTCCTCGCT
CTCCGCCGGCATCGGCAGCGACGGGCAGGTGGTCGGTATGAGCAGCATGA
GCCGTGCGATGAATTTCTTCTCCCCGTCGCCGGACCCGGACTGGCCTTTC
TGCTCCCCCGCCGGTCTGCTTTACGAATCTGGGCTGGTGTGCCCCGTCAT
GCAGGTCTCGGCGATGATTCTGATGCGGAGTCCTCCCGATTTTGAGAAGT
TGACGAGCGAGCATCATTGCCCCAATCCGGAGGGTGCGCTGCCCATGGAG
CTGGAAGCATTGAATGGAAAAGACGGGCAAGGTTCGATGCCGATGATGAT
ACCACCCGAGCTGTGGGAGAACCAGAACGTCTACTTCCTGAAGGACCCCG
GGGGGTGGAAGTGGCCCATCGGCCAGTCCTTCACCCGGGAGCAACGGATG
GTGGTCATCTTCCGAGGGACCATGTTCCCCGGGGGCTGGGAAACCGATTT
TCAAACCAGCTACGCCGCTGCGGCGGCCACGGCACGGCGGGGGCTTCCAG
GGAGGGTCCATTACGGTCAGTGTGGGTGGGCGAGCCTGGGCGGGGCCATT
TCACAGGTTGCTGCCGCCTTCCTTGTCAAGCATCATCGGCATTTAAAGAT
CGATTGTGTGACCTTCGGCTCTCCCCAAGTGGGCGATCGCACTTTCACAG
ATTTCTTGAATGCCAACGTGAACCTTCGACGAGCCGTTTACGTCGGTTCG
GGTCAACTGAACGAGCCGGTCCAGCGAGGCTTGAACTACGGCATGGGTGA
CGTCATCACCCAGATGCCCCTGGCCTGCTACAACCTCTCCATTCCCTTCT
GTGAAAGCATGAAGTTTATCGAAAACCCCGACAATCTGGAAAGTTTCCAG
TTCGTGATGGCCGCTGGAAACGTCCCATTCTACGCGAGCGACCTTCGGAA
CACGGAGGGCTGGTTGAAAAAGGAAAACTTTTTCTTCGGAGCCCGGAAAT
TCCGAGATATTCCCGAGGGGACCATGGCCTGCCACATTTGTTCCTATGCC
TGCTGGACTTCGGAGGCGACCGGAGATTCGGACACCCGCTGTTACTTCCC
GGGGCAAGGTGTGCAAGAAGCAGGGGAGCTCTGCTCGGTCGATTTCATGG
ATTCCATGACCGCACGCTTTCCCAACTTGGAGGGCTCTCCAGTGGAGGGT
GACTTGGTGCATGCAGGGGCTGTGGCCGGACGGGGGGGAGGCATGGGGGA
GTCGCCGTCGATGTGGGACGGCTTCATGGGACGGGGCGGTCGGCTTCGGA
AGACATGA
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protein sequence of rna6544

>rna6544-protein ID=rna6544-protein|Name=rna6544|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
LLPPSLLSASVEELNKLLTDEVAFSVFLSNLREVKECNRQLEAIRRTNAD
VARETLEKRSAVTALREEVKQTLDICKDIEKAYKEKVKGAGGGTEGGVDG
VCHLLERRVGESERGSEECARAFVAGEKPLEAWQFEYLKERKLFHERSAK
LEKIQRVRSEGR
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mRNA from alignment at CM002468.1:761816..762517-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6544 ID=rna6544|Name=rna6544|organism=Nannochloropsis gaditana|type=mRNA|length=702bp|location=Sequence derived from alignment at CM002468.1:761816..762517- (Nannochloropsis gaditana)
CCTCCTCCCTCCCTCCCTGCTTTCCGCGTCCGTGGAGGAATTGAACAAAC
TGCTCACGGATGAGGTGGCCTTCTCCGTGTTCTTGTCGAACTTACGGGAG
GTGAAGGAGTGCAACAGGCAACTGGAAGCCATTCGTCGGACAAACGCCGA
CGTGGCTCGGGAAACGCTCGAGAAACGGTCGGCCGTTACGGCGTTGCGGG
AGGAAGTTAAGCAAACGCTGGACATTTGCAAGGACATCGAGAAGGCGTAC
AAGGAGAAAGTGAAAGGGGCCGGGGGCGGGACGGAGGGCGGGGTGGACGG
GGTGTGCCACCTCTTGGAGAGGCGGGTGGGGGAGAGTGAGCGAGGGAGCG
AGGAATGTGCCCGGGCCTTCGTCGCCGGCGAAAAGCCGTTGGAAGCCTGG
CAGTTTGAATATTTGAAAGAACGCAAGCTCTTCCACGAGAGGAGTGCCAA
GCTGGAGAAGATCCAACGCGTGCGAAGCGAAGGGCGGTAGCATGACGGGC
CCCCGCGCAGGGGAGGACGTAACGGAAATTCAAAAAAGCGGGAGTATGAA
ACCGTTAAGGAGGGGGGATGCCCTCAAAATGCTGAATGTGTCGAAAGGCT
GGACACATGTTCGTAAAGAAATTGCTTTCTGTAAGTCAGCGCGGTCCCAT
CGCGCGTATCCGGTAGGACACTGTGCTACGGTTACCCCTACCCGTCGCCA
CC
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Coding sequence (CDS) from alignment at CM002468.1:761816..762517-

>rna6544 ID=rna6544|Name=rna6544|organism=Nannochloropsis gaditana|type=CDS|length=489bp|location=Sequence derived from alignment at CM002468.1:761816..762517- (Nannochloropsis gaditana)
CTCCTCCCTCCCTCCCTGCTTTCCGCGTCCGTGGAGGAATTGAACAAACT
GCTCACGGATGAGGTGGCCTTCTCCGTGTTCTTGTCGAACTTACGGGAGG
TGAAGGAGTGCAACAGGCAACTGGAAGCCATTCGTCGGACAAACGCCGAC
GTGGCTCGGGAAACGCTCGAGAAACGGTCGGCCGTTACGGCGTTGCGGGA
GGAAGTTAAGCAAACGCTGGACATTTGCAAGGACATCGAGAAGGCGTACA
AGGAGAAAGTGAAAGGGGCCGGGGGCGGGACGGAGGGCGGGGTGGACGGG
GTGTGCCACCTCTTGGAGAGGCGGGTGGGGGAGAGTGAGCGAGGGAGCGA
GGAATGTGCCCGGGCCTTCGTCGCCGGCGAAAAGCCGTTGGAAGCCTGGC
AGTTTGAATATTTGAAAGAACGCAAGCTCTTCCACGAGAGGAGTGCCAAG
CTGGAGAAGATCCAACGCGTGCGAAGCGAAGGGCGGTAG
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Synonyms
Publications