EWM24147.1, cds6528 (CDS) Nannochloropsis gaditana

Overview
NameEWM24147.1
Unique Namecds6528
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:762028..762516 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24147.1
ProductModifier of rudimentary, Modr
Partialtrue
Orig transcript idgnl|cribi|Naga_100426g6.9609.mrna
GbkeyCDS
End range.
End range762516
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:762028..762516 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
GO:0005768endosome
Vocabulary: INTERPRO
TermDefinition
IPR009851Mod_r
Homology
BLAST of EWM24147.1 vs. NCBI_GenBank
Match: gi|585105509|gb|EWM24147.1| (Modifier of rudimentary, Modr, partial [Nannochloropsis gaditana])

HSP 1 Score: 321.627 bits (823), Expect = 3.647e-111
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query:    1 LLPPSLLSASVEELNKLLTDEVAFSVFLSNLREVKECNRQLEAIRRTNADVARETLEKRSAVTALREEVKQTLDICKDIEKAYKEKVKGAGGGTEGGVDGVCHLLERRVGESERGSEECARAFVAGEKPLEAWQFEYLKERKLFHERSAKLEKIQRVRSEGR 162
            LLPPSLLSASVEELNKLLTDEVAFSVFLSNLREVKECNRQLEAIRRTNADVARETLEKRSAVTALREEVKQTLDICKDIEKAYKEKVKGAGGGTEGGVDGVCHLLERRVGESERGSEECARAFVAGEKPLEAWQFEYLKERKLFHERSAKLEKIQRVRSEGR
Sbjct:    1 LLPPSLLSASVEELNKLLTDEVAFSVFLSNLREVKECNRQLEAIRRTNADVARETLEKRSAVTALREEVKQTLDICKDIEKAYKEKVKGAGGGTEGGVDGVCHLLERRVGESERGSEECARAFVAGEKPLEAWQFEYLKERKLFHERSAKLEKIQRVRSEGR 162          
BLAST of EWM24147.1 vs. NCBI_GenBank
Match: gi|298705741|emb|CBJ49049.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 67.0106 bits (162), Expect = 4.321e-10
Identity = 47/151 (31.13%), Postives = 78/151 (51.66%), Query Frame = 0
Query:   10 SVEELNKLLTDEVAFSVFLSNLREVKECNRQLEAIRRTNADVARETLEKRSAVTALREEVKQTLDICKDIEKAYKEKVKGAGGGTEGGVDGVCHLLERRVGESER----GSEECARAFVAGEKPLEAWQFEYLKERKLFHERSAKLEKIQR 156
            S E+LN+LL DE A    L  +  V         +R+ N + AR TL K+ A + LREE ++     K ++ +Y++K  G G    G  D    ++ +RV  + +     SE+ A  F+    P + +  E+LKER+ +H  +AK+E ++R
Sbjct:  224 STEKLNRLLGDESARQALLLGMTNVVRMKDLRTDVRKGNVETARLTLAKQDAASVLREEGEKIKAELKALQTSYEDKAHGGGKNMGGTAD---QMILKRVKHASKMADTSSEQVATDFLEKRVPTQDFLDEFLKERQRYHMLAAKIECMKR 371          
BLAST of EWM24147.1 vs. NCBI_GenBank
Match: gi|661179003|emb|CDH58215.1| (predicted protein [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 63.929 bits (154), Expect = 4.142e-9
Identity = 42/153 (27.45%), Postives = 85/153 (55.56%), Query Frame = 0
Query:    5 SLLSASVEELNKLLTDEVAFSVFLSNLREVKECNRQLEAIRRTNADVARETLEKRSAVTALREEVKQTLDICKDIEKAYKEKVKGAGGGTEGGVDGVCHL-LERRVGESERGSEECARAFVAGEKPLEAWQFEYLKERKLFHERSAKLEKIQR 156
            S++S S++EL +LL+++VAF +F ++L  V+      E +R  N ++A + L + S++  LR++VK+     + +   ++EK K                 L+  + ES+  SE  A++F+ G    + +  ++ + RK++H R++KLE+ Q+
Sbjct:  155 SIVSRSMDELEELLSNDVAFELFFNSLERVQNMKTVQEELRNGNVNLANKNLTQESSLQQLRDQVKELDGEYRQLRAQFEEKEKQQNDAFNRFSPATMMTRLKASIHESDELSESVAQSFLDGNLDHDGFVKQFRELRKVYHIRASKLERSQK 307          
BLAST of EWM24147.1 vs. NCBI_GenBank
Match: gi|671685260|emb|CDS14276.1| (hypothetical protein LRAMOSA06446 [Lichtheimia ramosa])

HSP 1 Score: 63.5438 bits (153), Expect = 6.917e-9
Identity = 41/153 (26.80%), Postives = 86/153 (56.21%), Query Frame = 0
Query:    5 SLLSASVEELNKLLTDEVAFSVFLSNLREVKECNRQLEAIRRTNADVARETLEKRSAVTALREEVKQTLDICKDIEKAYKEKVKGAGGGTEGGVDGVCHL-LERRVGESERGSEECARAFVAGEKPLEAWQFEYLKERKLFHERSAKLEKIQR 156
            S++S S++EL +LL+++VAF +F ++L  V+      E +R  N ++A + L + S++  LR++V++     + +   ++EK K      +          L+  + ES+  SE  A++F+ G    + +  ++ + RK++H R++KLE+ Q+
Sbjct:  149 SIVSRSMDELEELLSNDVAFELFFNSLERVQNMKTVQEELRNGNVNLANKNLAQESSLQQLRDQVRELDSEYRQLRSQFEEKEKQQRDAFDRFSSATMMTRLKASIHESDELSESVAQSFLDGNLDHDGFVKQFRELRKVYHIRASKLERSQK 301          
BLAST of EWM24147.1 vs. NCBI_GenBank
Match: gi|552916618|gb|ESA01811.1| (hypothetical protein GLOINDRAFT_337762 [Rhizophagus irregularis DAOM 181602] >gi|595447472|gb|EXX57159.1| hypothetical protein RirG_209700 [Rhizophagus irregularis DAOM 197198w] >gi|595447474|gb|EXX57161.1| hypothetical protein RirG_209700 [Rhizophagus irregularis DAOM 197198w])

HSP 1 Score: 60.4622 bits (145), Expect = 2.691e-8
Identity = 42/154 (27.27%), Postives = 80/154 (51.95%), Query Frame = 0
Query:    4 PSLLSASVEELNKLLTDEVAFSVFLSNLREVKECNRQLEAIRRTNADVARETLEKRSAVTALREEVKQTLDICKDIEKAYKEKVKGAGGGTEGGVDGVCHL-LERRVGESERGSEECARAFVAGEKPLEAWQFEYLKERKLFHERSAKLEKIQR 156
            P LL+ S EEL  LL  +V F  F+ N+ +V+      + +R  N ++AR+ L +   +  LR  V       K+I   ++EK+K      +     +    L+    +S+  SE+ A++F+ GE  ++ +   + + RK++H R+AK+E++ +
Sbjct:   28 PILLNKSKEELEDLLNSDVIFDTFMENVEQVRNMKNLQDEMRMGNENLARKILSQEEELIKLRNSVDGQEKGLKEIYSNFEEKLKVQQEVLKRFSPSILITKLKSETQQSDDLSEQMAKSFLDGELEVDDFLKHFREVRKVYHLRNAKVERVSK 181          
BLAST of EWM24147.1 vs. NCBI_GenBank
Match: gi|1183327253|gb|ORX57011.1| (hypothetical protein DM01DRAFT_1334561 [Hesseltinella vesiculosa])

HSP 1 Score: 59.3066 bits (142), Expect = 1.772e-7
Identity = 47/166 (28.31%), Postives = 85/166 (51.20%), Query Frame = 0
Query:    3 PPS----LLSASVEELNKLLTDEVAFSVFL------SNLREVKE--CNRQLEAIRRTNADVARETLEKRSAVTALREEVKQTLDICKDIEKAYKEKVKGAGGGTEGGVDGVCHLLERRVGESERGSEECARAFVAGEKPLEAWQFEYLKERKLFHERSAKLEKIQR 156
            PP+    +++ S EE+N+LL+++ AF +F        N++ VKE  CN   E + R N     E +  RS VT++ +E ++      + E+  ++        T      +   L+  V ES+  SE  A++F+ G    E++  ++   RK++H R++ LEK+QR
Sbjct:  129 PPAEYLMIMNKSPEEINELLSNDRAFEIFFHSLDRVQNMKTVKEELCNGN-ENLARKNLSYEEELIRLRSQVTSMNKEYQELRSKVSEKERQQQDAFNRFSSST------IMTRLKAGVNESDDLSESVAQSFLDGSLDHESFVKQFRDLRKVYHLRASNLEKLQR 287          
BLAST of EWM24147.1 vs. NCBI_GenBank
Match: gi|934154069|gb|KPM04749.1| (vacuolar protein sorting-associated protein 37B-like protein [Sarcoptes scabiei])

HSP 1 Score: 58.5362 bits (140), Expect = 1.823e-7
Identity = 40/151 (26.49%), Postives = 76/151 (50.33%), Query Frame = 0
Query:    7 LSASVEELNKLLTDEV--AFSVFLSNLREVKECNRQLEAIRRTNADVARETLEKRSAVTALREEVKQTLDICKDIEKAY-KEKVKGAGGGTEGGVDGVCHLLERRVGESERGSEECARAFVAGEKPLEAWQFEYLKERKLFHERSAKLEKI 154
             S + EEL ++L D        F+ ++ ++K   R+ + +   N ++A   L   +   A R+E+ + L+ C+ ++    K K K      +  +D    L++  + E+E  S+E A +F+  E  +E +  E+ ++RKLFH R  K EK+
Sbjct:   17 FSKTDEELKQILDDTSNEVIDSFIKDMAQIKSLERERDKLIEQNKEIAERNLSFETTYRASRQELMKALEECQSLKNDMNKTKSKIKEFNRQNSLDTTLALMQAAMAEAEENSDEVANSFLKKEISIEEFLREFHEKRKLFHARRIKTEKM 167          
The following BLAST results are available for this feature:
BLAST of EWM24147.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585105509|gb|EWM24147.1|3.647e-111100.00Modifier of rudimentary, Modr, partial [Nannochlor... [more]
gi|298705741|emb|CBJ49049.1|4.321e-1031.13conserved unknown protein [Ectocarpus siliculosus][more]
gi|661179003|emb|CDH58215.1|4.142e-927.45predicted protein [Lichtheimia corymbifera JMRC:FS... [more]
gi|671685260|emb|CDS14276.1|6.917e-926.80hypothetical protein LRAMOSA06446 [Lichtheimia ram... [more]
gi|552916618|gb|ESA01811.1|2.691e-827.27hypothetical protein GLOINDRAFT_337762 [Rhizophagu... [more]
gi|1183327253|gb|ORX57011.1|1.772e-728.31hypothetical protein DM01DRAFT_1334561 [Hesseltine... [more]
gi|934154069|gb|KPM04749.1|1.823e-726.49vacuolar protein sorting-associated protein 37B-li... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6544rna6544Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications