EWM24159.1, cds6516 (CDS) Nannochloropsis gaditana

Overview
NameEWM24159.1
Unique Namecds6516
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:732711..733041 +
Alignment locationCM002468.1:733302..733624 +
Alignment locationCM002468.1:733804..734130 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24159.1
ProductProtein of unknown function DUF1365
Orig transcript idgnl|cribi|Naga_100741g1.7089.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:732711..733041 +
CM002468.1supercontigCM002468.1:733302..733624 +
CM002468.1supercontigCM002468.1:733804..734130 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR010775DUF1365
Homology
BLAST of EWM24159.1 vs. NCBI_GenBank
Match: gi|585105528|gb|EWM24159.1| (Protein of unknown function DUF1365 [Nannochloropsis gaditana])

HSP 1 Score: 665.996 bits (1717), Expect = 0.000e+0
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0
Query:    1 MFRCFSLGRRLRLSDNTVRPLHMKIFSLLFPPSSTSSAFFSSVWPLVLLVTFVIVPFLVLCVRGLLSSRPSHTRRPLGFSCLYVGRVWHVRFLPTVHKFAYGLFYTYLDLDCLPQTFQGMWPLASFSTLASPASLPAFAHFHEADHLKDVPVEYHPSSFPLPSPPPPPTPLPLAERVRRLVARKTGRRPEGRITLLTHLRYMGYVFNPVSFYYVWDKEGKAVETVVAEVSNTPWNEMHCYVLDPRSPGIKATRMLKLRSVAGTRAGGKEEVWRYVFDKDFHVSPFMDMAHVYDWEFVAPREGRAEEGAERGMWVTTHMLKKEGKER 326
            MFRCFSLGRRLRLSDNTVRPLHMKIFSLLFPPSSTSSAFFSSVWPLVLLVTFVIVPFLVLCVRGLLSSRPSHTRRPLGFSCLYVGRVWHVRFLPTVHKFAYGLFYTYLDLDCLPQTFQGMWPLASFSTLASPASLPAFAHFHEADHLKDVPVEYHPSSFPLPSPPPPPTPLPLAERVRRLVARKTGRRPEGRITLLTHLRYMGYVFNPVSFYYVWDKEGKAVETVVAEVSNTPWNEMHCYVLDPRSPGIKATRMLKLRSVAGTRAGGKEEVWRYVFDKDFHVSPFMDMAHVYDWEFVAPREGRAEEGAERGMWVTTHMLKKEGKER
Sbjct:    1 MFRCFSLGRRLRLSDNTVRPLHMKIFSLLFPPSSTSSAFFSSVWPLVLLVTFVIVPFLVLCVRGLLSSRPSHTRRPLGFSCLYVGRVWHVRFLPTVHKFAYGLFYTYLDLDCLPQTFQGMWPLASFSTLASPASLPAFAHFHEADHLKDVPVEYHPSSFPLPSPPPPPTPLPLAERVRRLVARKTGRRPEGRITLLTHLRYMGYVFNPVSFYYVWDKEGKAVETVVAEVSNTPWNEMHCYVLDPRSPGIKATRMLKLRSVAGTRAGGKEEVWRYVFDKDFHVSPFMDMAHVYDWEFVAPREGRAEEGAERGMWVTTHMLKKEGKER 326          
BLAST of EWM24159.1 vs. NCBI_GenBank
Match: gi|299471627|emb|CBN76849.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 194.512 bits (493), Expect = 6.234e-55
Identity = 113/263 (42.97%), Postives = 137/263 (52.09%), Query Frame = 0
Query:   80 SCLYVGRVWHVRFLPTVHKFAYGLFYTYLDLDCLPQTFQG-MWPLASFSTLASPASLPAFAHFHEADHLKD----VPV-------EYHPSSFPLPSPPPPPTPLPL------------------------------AERVRRLVARKTGRRPEGRITLLTHLRYMGYVFNPVSFYYVWDKEGKAVETVVAEVSNTPWNEMHCYVLDPRSPGIKATRMLKLR-SVAGTRAGGKEEVWRYVFDKDFHVSPFMDMAHVYDWEFVAP 299
            S +Y GRVWH RF PT H F+Y +FY  +DLD L   F   +WP+ S       A LPA + F  ADHLK      PV           SS      P       +                              A+RVR +V   TG RP GR+ LLTHL Y+GY FNPVSFYY  DK  + +ETVVAEVSNTPW EMHCYVL+P++ G++     K   +   T   G +E+ RY F+KDFHVSPFM M H YDW+F AP
Sbjct:   51 SAVYAGRVWHARFKPTAHHFSYPIFYCLVDLDELDIAFPWYIWPVGS-------ARLPALSRFRSADHLKGRGAATPVFAAGGGGGGDESSSAAAGDPVDAAGDGVGRNEGGRGASGPSRARATAATSSPPLSSSLADRVRDIVEEATGARPTGRVQLLTHLAYLGYCFNPVSFYYCLDKTEREIETVVAEVSNTPWGEMHCYVLNPKTKGVQVIAKDKSNDNDNNTSKRGTKEITRYRFEKDFHVSPFMSMKHTYDWKFTAP 306          
BLAST of EWM24159.1 vs. NCBI_GenBank
Match: gi|1175909275|gb|OQW30151.1| (chromosome partitioning protein ParA [Nitrospira sp. SG-bin1])

HSP 1 Score: 170.244 bits (430), Expect = 1.209e-47
Identity = 102/248 (41.13%), Postives = 127/248 (51.21%), Query Frame = 0
Query:   80 SCLYVGRVWHVRFLPTVHKFAYGLFYTYLDLDCLPQTFQGMWPLASFSTLASPASLPAFAHFHEADHLKDVPVEYHPSSFPLPSPPPPPTPLPLAERVRRLVARKTGRRPEGRITLLTHLRYMGYVFNPVSFYYVWDKEGKAVETVVAEVSNTPWNEMHCYVLDPRSPGIKATRMLKLRSVAGTRAGGKEEVWRYVFDKDFHVSPFMDMAHVYDWEFVAPREGRA--EEGAERGMWVTTHMLKKEGKE 325
            S +Y G V H RF P  H F Y LF  Y+DLD LP  FQ  W  +   T          A F+ ADH+ D                  PT +PL   +R+LV  +TG +P G I LLTHLRY GYVFNPVSFY+ +D+  + VET+VAE++NTPW E HCYVL                S    RA G+++  RY FDK FH+SPF+DM   YDW F  P    A   E   +G       +K E +E
Sbjct:    3 SAIYTGHVRHRRFSPVSHAFTYRLFMMYVDLDELPTLFQNRWFWSVNRT--------NLASFNRADHVGD------------------PT-IPLGGSIRQLVEERTGSQPAGPIRLLTHLRYFGYVFNPVSFYFCYDRSDRCVETIVAEITNTPWGERHCYVL----------------SSEQNRASGRKK--RYQFDKIFHISPFIDMDVAYDWRFTEPTSQLAIHMENLRKGQPFFDATMKLERRE 205          
BLAST of EWM24159.1 vs. NCBI_GenBank
Match: gi|737636524|ref|WP_035606560.1| (DUF1365 domain-containing protein [Hylemonella gracilis] >gi|597957747|gb|EYC50935.1| chromosome partitioning protein ParA [Hylemonella gracilis str. Niagara R])

HSP 1 Score: 164.851 bits (416), Expect = 1.691e-45
Identity = 99/225 (44.00%), Postives = 118/225 (52.44%), Query Frame = 0
Query:   79 FSCLYVGRVWHVRFLPTVHKFAYGLFYTYLDLDCLPQTFQGMWPLASFSTLASPASLPAFAHFHEADHLKDVPVEYHPSSFPLPSPPPPPTPLPLAERVRRLVARKTGRRPEGRITLLTHLRYMGYVFNPVSFYYVWDKEGKAVETVVAEVSNTPWNEMHCYVL--DPRSPGIKATRMLKLRSVAGTRAGGKEEVWRYVFDKDFHVSPFMDMAHVYDWEFVAPRE 301
            FS LYVGRV H RF P  H F YGL+  YLDL  L + F G W  ++           A A F   D+L D                     LPL E VR+ VA+ TGRRP G I +LTHLRY GYVFNPV+FYYV D     +ET+VAE++NTPW E HCYVL  D ++P                    + ++ R+ F KDFHVSPFM M   YDW F  P E
Sbjct:    2 FSALYVGRVRHRRFQPRPHDFRYGLYMVYLDLAELDRVFAGRWFWSTRRM--------ALARFRREDYLGD-------------------PALPLDEAVRQRVAQATGRRPTGPIRMLTHLRYFGYVFNPVTFYYVHDAADTRLETIVAEITNTPWKERHCYVLPQDEQAP--------------------RPDLHRHRFTKDFHVSPFMPMEQDYDWRFTPPGE 179          
BLAST of EWM24159.1 vs. NCBI_GenBank
Match: gi|931407428|gb|KPJ95237.1| (chromosome partitioning protein ParA [Gammaproteobacteria bacterium SG8_11])

HSP 1 Score: 163.31 bits (412), Expect = 1.060e-44
Identity = 99/227 (43.61%), Postives = 113/227 (49.78%), Query Frame = 0
Query:   73 TRRPLGFSCLYVGRVWHVRFLPTVHKFAYGLFYTYLDLDCLPQTFQGMWPLASFSTLASPASLPAFAHFHEADHLKDVPVEYHPSSFPLPSPPPPPTPLPLAERVRRLVARKTGRRPEGRITLLTHLRYMGYVFNPVSFYYVWDKEGKAVETVVAEVSNTPWNEMHCYVLDPRSPGIKATRMLKLRSVAGTRAGGKEEVWRYVFDKDFHVSPFMDMAHVYDWEFVAP 299
            TR  L  S +Y G+V H RF P  H F Y LF   LDL  L   F+  W  +S             A F   DH+ D      P+              PLA+ VRRLV  +TGR P G I LLTHLRY GY FNPVSFYY +D     VE +VAEV+NTPW E HCYVL                    +   G++   RY FDKDFHVSPFM MA  YDW F AP
Sbjct:    7 TRELLMNSYIYAGQVRHRRFQPKTHSFQYRLFMMLLDLAELDTVFKSRWLWSSRGF--------NLAWFRRKDHMGD------PNK-------------PLADEVRRLVREQTGRTPRGPIRLLTHLRYFGYCFNPVSFYYCYDASDTRVEAIVAEVNNTPWGEQHCYVL------------------TESMNQGRDRHKRYTFDKDFHVSPFMQMAVHYDWRFSAP 188          
BLAST of EWM24159.1 vs. NCBI_GenBank
Match: gi|1101253884|gb|OIP99305.1| (chromosome partitioning protein ParA [Zetaproteobacteria bacterium CG2_30_46_52])

HSP 1 Score: 162.155 bits (409), Expect = 1.601e-44
Identity = 96/250 (38.40%), Postives = 133/250 (53.20%), Query Frame = 0
Query:   79 FSCLYVGRVWHVRFLPTVHKFAYGLFYTYLDLDCLPQTFQG--MWPLASFSTLASPASLPAFAHFHEADHLKDVPVEYHPSSFPLPSPPPPPTPLPLAERVRRLVARKTGRRPEGRITLLTHLRYMGYVFNPVSFYYVWDKEGKAVETVVAEVSNTPWNEMHCYVLDPRSPGIKATRMLKLRSVAGTRAGGKEEVWRYVFDKDFHVSPFMDMAHVYDWEFVAPREGRAEEGAERGMWVTTHMLKKEGKER 326
            FSCLY G V H R+ P VH+F   LFY ++DLD L   F+G  +W + S++           A F  +D+L D  +                   PL   V   V  +TG+RP+G + LLTHLRY G+VFNPVSFYY +D+ G+ VE +VAE++NTPW+E H YVL                 V+ + AG  +E +++ FDK+FH+SPFM MA  Y W F AP E            +T HM+   G+++
Sbjct:    2 FSCLYEGVVRHRRYAPKVHRFENNLFYAFIDLDELDTVFKGRWLWSVGSWN----------LASFKRSDYLGDAHI-------------------PLKSAVLDCVETQTGKRPQGPVRLLTHLRYFGFVFNPVSFYYCYDEAGEFVEAIVAEITNTPWDERHAYVL----------------PVSQSNAG--DEKFQFAFDKEFHISPFMPMAMHYQWYFTAPAEH-----------LTVHMVNFIGEDK 193          
BLAST of EWM24159.1 vs. NCBI_GenBank
Match: gi|1174250078|ref|WP_081463440.1| (DUF1365 domain-containing protein [Hylemonella gracilis])

HSP 1 Score: 161.77 bits (408), Expect = 3.919e-44
Identity = 101/231 (43.72%), Postives = 119/231 (51.52%), Query Frame = 0
Query:   73 TRRPLGFSCLYVGRVWHVRFLPTVHKFAYGLFYTYLDLDCLPQTFQGMWPLASFSTLASPASLPAFAHFHEADHLKDVPVEYHPSSFPLPSPPPPPTPLPLAERVRRLVARKTGRRPEGRITLLTHLRYMGYVFNPVSFYYVWDKEGKAVETVVAEVSNTPWNEMHCYVL--DPRSPGIKATRMLKLRSVAGTRAGGKEEVWRYVFDKDFHVSPFMDMAHVYDWEFVAPRE 301
            +RR   FS LYVGRV H R LP  H F YGLF  YLDL  L + F G W  ++           A A F   D+L D                     LPL E VR  VA+ TG+RP G I +LTHLRY GYVFNPV+FYYV D     VET+VAE++NTPW E H YVL  D  +P                    K ++ R+ F K+FHVSPFM M   YDW F +P E
Sbjct:   13 SRRAPMFSALYVGRVRHRRLLPRPHDFRYGLFMVYLDLAELDRVFAGRWFWSTRRM--------ALARFRREDYLGD-------------------PALPLDEAVRLRVAQATGQRPTGPIRMLTHLRYFGYVFNPVTFYYVHDAADTRVETIVAEITNTPWKERHSYVLPQDAHAP--------------------KPDLHRHRFTKNFHVSPFMPMEQEYDWRFTSPGE 196          
BLAST of EWM24159.1 vs. NCBI_GenBank
Match: gi|332041247|gb|EGI77611.1| (hypothetical protein HGR_05454 [Hylemonella gracilis ATCC 19624])

HSP 1 Score: 160.614 bits (405), Expect = 6.824e-44
Identity = 99/225 (44.00%), Postives = 116/225 (51.56%), Query Frame = 0
Query:   79 FSCLYVGRVWHVRFLPTVHKFAYGLFYTYLDLDCLPQTFQGMWPLASFSTLASPASLPAFAHFHEADHLKDVPVEYHPSSFPLPSPPPPPTPLPLAERVRRLVARKTGRRPEGRITLLTHLRYMGYVFNPVSFYYVWDKEGKAVETVVAEVSNTPWNEMHCYVL--DPRSPGIKATRMLKLRSVAGTRAGGKEEVWRYVFDKDFHVSPFMDMAHVYDWEFVAPRE 301
            FS LYVGRV H R LP  H F YGLF  YLDL  L + F G W  ++           A A F   D+L D                     LPL E VR  VA+ TG+RP G I +LTHLRY GYVFNPV+FYYV D     VET+VAE++NTPW E H YVL  D  +P                    K ++ R+ F K+FHVSPFM M   YDW F +P E
Sbjct:    2 FSALYVGRVRHRRLLPRPHDFRYGLFMVYLDLAELDRVFAGRWFWSTRRM--------ALARFRREDYLGD-------------------PALPLDEAVRLRVAQATGQRPTGPIRMLTHLRYFGYVFNPVTFYYVHDAADTRVETIVAEITNTPWKERHSYVLPQDAHAP--------------------KPDLHRHRFTKNFHVSPFMPMEQEYDWRFTSPGE 179          
BLAST of EWM24159.1 vs. NCBI_GenBank
Match: gi|1175937636|gb|OQW57549.1| (chromosome partitioning protein ParA [Nitrospira sp. ST-bin4])

HSP 1 Score: 160.229 bits (404), Expect = 9.276e-44
Identity = 93/220 (42.27%), Postives = 115/220 (52.27%), Query Frame = 0
Query:   80 SCLYVGRVWHVRFLPTVHKFAYGLFYTYLDLDCLPQTFQGMWPLASFSTLASPASLPAFAHFHEADHLKDVPVEYHPSSFPLPSPPPPPTPLPLAERVRRLVARKTGRRPEGRITLLTHLRYMGYVFNPVSFYYVWDKEGKAVETVVAEVSNTPWNEMHCYVLDPRSPGIKATRMLKLRSVAGTRAGGKEEVWRYVFDKDFHVSPFMDMAHVYDWEFVAP 299
            S +Y G V H RF P  H F Y LF  Y+DLD LP  F+  W  +   T          A F   DH+ D P+                   PL + +R+LV  +TG RP G I LLTH RY GYVFNPVSFY+ +D+  + V+T+VAE++NTPW E HCYVL     G K             RA G+ +   Y FDK FH+SPF+DM  VYDW F  P
Sbjct:    3 SAIYTGHVRHRRFSPVPHAFTYRLFMMYVDLDELPTVFENRWFWSVDRT--------NLAAFRRRDHVGD-PIN------------------PLNDSIRQLVEERTGSRPAGPIRLLTHFRYFGYVFNPVSFYFCYDRFDRGVDTIVAEITNTPWGERHCYVL-----GTK-----------DNRARGRRK--HYQFDKAFHISPFIDMDTVYDWRFTEP 177          
BLAST of EWM24159.1 vs. NCBI_GenBank
Match: gi|931475153|gb|KPK56566.1| (chromosome partitioning protein ParA [Thiotrichales bacterium SG8_50])

HSP 1 Score: 159.458 bits (402), Expect = 1.801e-43
Identity = 95/222 (42.79%), Postives = 117/222 (52.70%), Query Frame = 0
Query:   80 SCLYVGRVWHVRFLPTVHKFAYGLFYTYLDLDCLPQTFQGMWPLASFSTLASPASLPAFAHFHEADHLKDVPVEYHPSSFPLPSPPPPPTPLPLAERVRRLVARKTGRRPEGRITLLTHLRYMGYVFNPVSFYYVWDKEGKAVETVVAEVSNTPWNEMHCYVLDPRSPGIKATRMLKLRSVAGTRAGGKEEVWRYVFDKDFHVSPFMDMAHVYDWEFVAPRE 301
            SC+Y GRV H R  P +H+F+Y +F  YLDLD LP  F+  W  +        A+ PA A F   DHL                        PL+E +R+LV R+TG RP+G I LLT+L Y GY FNPVSFYY +D +GK ++T+VAEV+NTPW E   YVL P S  I                 GK  V R+  +K  HVSPFM M   YDW F  P E
Sbjct:    3 SCIYEGRVKHTRTDPVLHRFSYRMFMMYLDLDELPTLFRKRWLWS--------ATRPALARFRREDHLG-------------------AAGEPLSESIRKLVERETGSRPQGPIRLLTNLSYFGYCFNPVSFYYCFDADGKTLKTIVAEVNNTPWGERDTYVL-PESLDI-----------------GKRGVKRFRPEKKMHVSPFMPMEVDYDWCFTQPEE 179          
The following BLAST results are available for this feature:
BLAST of EWM24159.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105528|gb|EWM24159.1|0.000e+0100.00Protein of unknown function DUF1365 [Nannochlorops... [more]
gi|299471627|emb|CBN76849.1|6.234e-5542.97conserved unknown protein [Ectocarpus siliculosus][more]
gi|1175909275|gb|OQW30151.1|1.209e-4741.13chromosome partitioning protein ParA [Nitrospira s... [more]
gi|737636524|ref|WP_035606560.1|1.691e-4544.00DUF1365 domain-containing protein [Hylemonella gra... [more]
gi|931407428|gb|KPJ95237.1|1.060e-4443.61chromosome partitioning protein ParA [Gammaproteob... [more]
gi|1101253884|gb|OIP99305.1|1.601e-4438.40chromosome partitioning protein ParA [Zetaproteoba... [more]
gi|1174250078|ref|WP_081463440.1|3.919e-4443.72DUF1365 domain-containing protein [Hylemonella gra... [more]
gi|332041247|gb|EGI77611.1|6.824e-4444.00hypothetical protein HGR_05454 [Hylemonella gracil... [more]
gi|1175937636|gb|OQW57549.1|9.276e-4442.27chromosome partitioning protein ParA [Nitrospira s... [more]
gi|931475153|gb|KPK56566.1|1.801e-4342.79chromosome partitioning protein ParA [Thiotrichale... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6532rna6532Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications