rna6523, rna6523 (mRNA) Nannochloropsis gaditana

Overview
Namerna6523
Unique Namerna6523
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length765
Alignment locationCM002468.1:718819..720062 +

Link to JBrowse

Properties
Property NameValue
Productprogestin and adipoq receptor family member 3-like protein
Orig transcript idgnl|cribi|Naga_100532g1.2620.mrna
Orig protein idgnl|cribi|Naga_100532g1.2620
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:718819..720062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100532g1gene6303Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6523rna6523-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24164.1cds6507Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6523 ID=rna6523|Name=rna6523|organism=Nannochloropsis gaditana|type=mRNA|length=765bp
TTTTAGGTGGCCGGGGCTGTCAAGGCTTAAATATTCAGATCGGCAGACTG
GTCGGGTTGGCGCGTACGTAGGCCATGGCCCCCAACACTGAAAATATGCC
TACAAGCAGCAGTGCCGACACCCGTCCCGGCCCCGCCAGAGTGAATAACG
AGGGTATGGGCAAGAATACAATTGATCCTGCACGCACGCGCACTGACAGG
AAAGAAGGCTTCTATGTCGAAGCTCCGTCCCGTGCTTCCCTTGTAACCGC
GACTCTGAGGCGGGGATGCTGCGGCTGTCCACCCGTTCGACATGTGCGCA
ACGCACCTTCCTTCCAACACATCCCGCACATCACCATCGGATACCGCGTC
GGCTTTTCTCTCCGACATTGCCTGGCGTCTCTCTTCACATTCCACAACGA
GTCCATCAATATTTGGTCGCATCTTCTGGGAACAATGTACGTCTTCTCGG
TCCTCGTTTCGTTCCTCCGCCTCGAGCGTCTCCACCCCAACGTGGACCCC
ATCGAATACAAAGCCATCCTCACCTTCCTCCTGAGCGCCGTGGCTTGCCT
CAGTTTTAGCACGTGCTACCATACCTTTGGGTGCATGTCGGTAGGTCCTC
GTCCTCCCCCACAGGCCCTTCTTTAGTTGAGTACGACAGATCTCTATGCT
TGCACTGCAGTCTATGAAGTCGTATCGATGTATATCTGTGGCAAATGGAA
CTCTTTCCCCCCCTCTGAGTCCGCAGGGCGCGTTCTCGCCCCCTATCTAG
ACCTATCCTCCCTCC
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protein sequence of rna6523

>rna6523-protein ID=rna6523-protein|Name=rna6523|organism=Nannochloropsis gaditana|type=polypeptide|length=173bp
MDLVGIALLIWGSYVPGIHYAFVCFPRWQSLYQTLTFLLLLLGLGGAAFT
DTHCPRQSLFRTLTFAFLVGFGLVPSLHWCLLVPAHIRSIFLDNLLGMFL
AYGVGFFFWSSRFPERLFESKKGAAFSFDLLFSSHQLWHLCIFFAVYTWL
EGILEFHHALHDLGCVVLRADGD
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mRNA from alignment at CM002468.1:718819..720062+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6523 ID=rna6523|Name=rna6523|organism=Nannochloropsis gaditana|type=mRNA|length=1244bp|location=Sequence derived from alignment at CM002468.1:718819..720062+ (Nannochloropsis gaditana)
CTGGTGCGTTCTCTCGCCCTAATTTCGGTGACAGGAGAGGGCATTTAAGT
TCTTGTTGCGCATGGACTTGGTCGGTATAGCACTTTTGATCTGGTAagcg
gaaagagggaggaagggagggagggaggaaaggagggaggaagagagggg
taaaagggtgggaggaaagtgaaCAAGTACGGAAAAGCGCACCAACTTGA
GAGAGCTCTTGTTTTCTCCCTTtatccctccctgcctccttttctccctt
tcctcctgcaggGGTTCTTACGTGCCTGGGATCCACTACGCCTTCGTCTG
CTTCCCTCGCTGGCAGAGCCTCTACCAaaccctcaccttcctcctcctcc
tccttggcctggGGGGCGCCGCCTTCACCGACACGCATTGCCCCCGCCAG
TCCCTCTTCCGCACCCTGaccttcgccttccttgtcGGCTTTGGACTCGT
GCCCTCCCTGCATTGGTGCCTGCTCGTCCCGGCCCATATCCGGAGCATCT
TCCTTGACAACCTCCTTGGCATGTTTCTGGCCTACGGCGTCGGGTTCTTT
TTCTGGTCCAGCCGTTTCCCCGAACGGCTTTTTGAATCCAAGAAGGGCGC
GGCCTTCAGTTTCGAtttgctcttctcctcgcatCAATTGTGGCACCTTT
GCATTTTTTTCGCCGTCTATACGTGGCTGGAGGGTATTTTGGAGTTCCAC
CATGCCTTGCACGACCTAGGATGCGTCGTGCTAAGGGCCGACGGAGATTA
GTAGAGTGTGGATTAAAAGAGTGTGGATTGGGAGTCGGGAATTTGAATTT
AAACGATGGATTCAAACTTAAACATCCACCGCAACGGCTGTCCAGGTGGG
GACTCGAGGAGCATGCCTGTCATTGGGGTAAATTTGACAAAATGATACCA
AAATGGAGCTGTAATATGAGCAAGTGATGTTGAAATGCCAGCCCATGCTT
CTGTCAATGGaggctggaaggggaaagccgaAAGTGAGAAGTAAAATACC
CGGATATTTACATACACATGCAAGGCACCATCGTCCTGCCCTGAGGTCAT
ACAGAATTCGGTAGCGCCAGAAAAATCGATGAAAAGTGTGAAGAAAAGGT
TCCCTGGAAGAAGATTCAACCAAATATTGCGCGAAAGAAAATGCAAGGGG
GCCGTCGAGCATTACCGCCTTCCGCCCTCACCCTGCTTTGTCGAGATATG
GCAGCAAATTGAAAAATGAATAAAGCCACCCATGGCCGTGCATC
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Coding sequence (CDS) from alignment at CM002468.1:718819..720062+

>rna6523 ID=rna6523|Name=rna6523|organism=Nannochloropsis gaditana|type=CDS|length=1044bp|location=Sequence derived from alignment at CM002468.1:718819..720062+ (Nannochloropsis gaditana)
ATGGACTTGGTCGGTATAGCACTTTTGATCTGgGGTTCTTACGTGCCTGG
GATCCACTACGCCTTCGTCTGCTTCCCTCGCTGGCAGAGCCTCTACCAaa
ccctcaccttcctcctcctcctccttggcctggGGGGCGCCGCCTTCACC
GACACGCATTGCCCCCGCCAGTCCCTCTTCCGCACCCTGaccttcgcctt
ccttgtcGGCTTTGGACTCGTGCCCTCCCTGCATTGGTGCCTGCTCGTCC
CGGCCCATATCCGGAGCATCTTCCTTGACAACCTCCTTGGCATGTTTCTG
GCCTACGGCGTCGGGTTCTTTTTCTGGTCCAGCCGTTTCCCCGAACGGCT
TTTTGAATCCAAGAAGGGCGCGGCCTTCAGTTTCGAtttgctcttctcct
cgcatCAATTGTGGCACCTTTGCATTTTTTTCGCCGTCTATACGTGGCTG
GAGGGTATTTTGGAGTTCCACCATGCCTTGCACGACCTAGGATGCGTCGT
GCTAAGGGCCGACGGAGATTAGATGGACTTGGTCGGTATAGCACTTTTGA
TCTGgGGTTCTTACGTGCCTGGGATCCACTACGCCTTCGTCTGCTTCCCT
CGCTGGCAGAGCCTCTACCAaaccctcaccttcctcctcctcctccttgg
cctggGGGGCGCCGCCTTCACCGACACGCATTGCCCCCGCCAGTCCCTCT
TCCGCACCCTGaccttcgccttccttgtcGGCTTTGGACTCGTGCCCTCC
CTGCATTGGTGCCTGCTCGTCCCGGCCCATATCCGGAGCATCTTCCTTGA
CAACCTCCTTGGCATGTTTCTGGCCTACGGCGTCGGGTTCTTTTTCTGGT
CCAGCCGTTTCCCCGAACGGCTTTTTGAATCCAAGAAGGGCGCGGCCTTC
AGTTTCGAtttgctcttctcctcgcatCAATTGTGGCACCTTTGCATTTT
TTTCGCCGTCTATACGTGGCTGGAGGGTATTTTGGAGTTCCACCATGCCT
TGCACGACCTAGGATGCGTCGTGCTAAGGGCCGACGGAGATTAG
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Synonyms
Publications