|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100296g6.9847.mrna |
| Orig protein id | gnl|cribi|Naga_100296g6.9847 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:711364..712129 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6520 ID=rna6520|Name=rna6520|organism=Nannochloropsis gaditana|type=mRNA|length=2019bp
GACCGGCTAGTTTGTTTAATGTTGATAGCCCATCGTATTCGGTAGTCGAC
GCATCCTCGTTTCTGAACGTACTTATCAGCTCAAACACGTTTCCTCTTTG
TACACAGGCAAGACACCATGGGGGGAAGGTGTTCCCGGTTGCCCGACGAG
CAAATCAACACGCCACAGGTTCCGCGCTCGAGTCGTATCAAAGAGGACTG
TCCTATTCACGGCAAGAACGGGTTCATTGCCAGATCCTCGAGTGGCGACA
ATGTTGTGGACGAGGAAGACCGACAGTCAAGCCACGCACGAAAACAAGAT
GTGCTGCAGAAAACCAGGCTCCCCTTGCGAAGGGCCTTCAGGTCTCGTAC
AACCAACAAGATAAGCGGGAAGGCGGAGATCAGCCTGCTCCGACCTGCCC
ACCTGTACGCTGCCGGGGATGTGGCCGCATTGCAAGTGGAAGTACAAGTC
CCTATCCACAAGTCTTTCGAGCCGGGAACGAAGGTTTTCATGCCCGATAA
CGGGTACTGGAAGGAAAGCTCTGTCTCTGTGCCCGATGGCTTGTCCCCGG
GGGACGTCGTCACGGTGGAATTATTGGCGGAACCGAAACGTTCCAAAATG
ACGTTAAAGGACGTCAAAGCCGACATCGAGCTCCGGGTGACGGGTCCCAG
CGTGACTCCTGGCGGACCAGAGATGATCATTTTGCGGCAATACGTCGCCT
TTGACGGTATTGATTTTGCGGGAGACTTGTTTCCCATCCCGCTTTCCCCC
TCCTTGGGAACCGCCCCTTTACTTCTGTACATTCTGGGGGCGGAGCAGGC
GGGCAAAACCACCTTTGTCGAGAGCCTGCGCAACGTTTTGGCTTCGGCAG
AAACGGACATGCCCCCCCCCTCAGACCTCGATAGTACCGACCACCGAGAT
CACTCGCCTCGAGCTCAATGCGGAAGCGATCAGTCCTCGTTTCCGGGCGC
CTCTGACGGCCCGTGTGACAGAGATCCCATCCTCCATGGTCCTGGCTCCC
ACGGACGCAGACAAAGCTTCCATGGAACGCCTCTTGCCTGCGGGGCATGG
GGCGCTGGTCTTCGTGGCGGCCGACGAGGTGGAGACGGCGCCTGCCAAGA
TGGCTGGCCTTCAAGCTTCGATTCAACAGCTCAAGGCGCAAAATTTCAAC
CCCCTGGTGGTCCTGACCCGCATGGACAAAGTAGAGCCCCTGGTTGCGGC
GGATCCCTTTAATTGGTCCCTGAAAAAAGTCTCCCACGTGCGTCGGCGCG
CGAGCCAATGTCTGGGGGTCTCCTGGGCCAATACTCTGGTCTTTGTCCCC
TATGCCGCCCCTCGCCCGGCCATGCGGCCAGAGGTGGCAAAAGCGAGCAT
GCGCACCGACGTGATTATCAAGGGGAAGAAAGCGTCCTCGATCTTGGACA
TGAGGGAGGATACGGTCCGGGAGGAAGGGATGGAGCGGTCCTTTGCCATC
GACAAATTGGTGCTTTTCATCGCCAAGGCGGGTTTGGAAGTGGCCCAAGA
GAAAATGGAAGGCAGGGTGAGAAGAAGCAGTAGCGCTGGGAGCGCAGGTT
TGGGGACCTGGACGGGGGGACGGATCACTGCGACGCCCAAGACGGACATG
TCCATGACCAAGACGGCGCCCTCCGATGCTATGCTTGCGACGCGGCAACA
GACGGTAGAATTGGACGGCTCCTTCTCCTCCAACTTCCCGACACTGTCTG
CCAGTACCCCTCAGCCATAACTGTGGGGAAAATATTGCCTTTGTTGCGTA
AAAATTGTGTCCTGCGTAAGCTGGAACATCGTAGTATGCCAAACGATATT
CGTATTCGCATGAACGGTATACCGTGGGACTGGGGCACCATCTTTGAAGA
ATGGGGATTCTGTTCACCTAAACTGTAGGATCATTGACATGGGGATGGGA
TCAACTGAAAGCTCCAAGGTTTTGATTGAGAGAGATTATGAAGTGATGAA
TGCCGACCACGCGGGAGCAACGTAGAGGCGGACCTCTGGGGAGGTTGTCA
AAACAAAAAATGAAGCGCT back to topprotein sequence of rna6520 >rna6520-protein ID=rna6520-protein|Name=rna6520|organism=Nannochloropsis gaditana|type=polypeptide|length=197bp
MTSSDDSDRATLVRAIDFSLQGDAEARRFLEDLSTPDLSAGIDPLLSLWK
VSLDLFTSSPDGTPHAYFIACVLRRNVRQQWDFTPSQTRTQLAKGTWETL
IAYAEKRAEIPPQINSSRGVLSTLIADPAVNQLISVVVAQAVAIEDRNGE
AHAATRQLISMALSHAGSVNKAQQSLSTGRWKPVRRREASWWWACGH back to topmRNA from alignment at CM002468.1:711364..712129+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6520 ID=rna6520|Name=rna6520|organism=Nannochloropsis gaditana|type=mRNA|length=766bp|location=Sequence derived from alignment at CM002468.1:711364..712129+ (Nannochloropsis gaditana)
ATGACATCTTCCGATGACAGCGACCGTGCGACGCTCGTTCGGGCCATtga
cttctccctccaagggGACGCAGAGGCGAGGCGCTTCCTGGAGGACTTGT
CGACGCCGGATTTGAGCGCAGGCATTGACCCACTTTTGTCGCTGTGGAAG
GTATCCTTGGATCTTTTTACCAGTTCTCCAGATGGTACACCGCACGCATA
TTTCATTGCATGTGTGCTTCGTCGAAATGTCCGGCAACAATGGGACTTCA
CGCCTTCACAAACACGGACCCAGCTTGCCAAGGGCACTTGGGAGACCCTC
ATAGCTTACGCAGAGAAGCGTGCGGAAATACCCCCTCAAATTAATTCTTC
CCGCGGTGTACTCAGCACTTTGATAGCTGATCCAGCCGTGAATCAACTGA
TTTCGGTCGTGGTCGCACAAGCTGTGGCAATTGAGGACAGGAATGGGGAA
GCCCATGCCGCGACCCGACAATTAATCTCCATGGCCCTATCCCACGCAGG
GAGTGTGAACAAAGCGCAGCAATCTCTCTCCACTGGCCGATGGAAGCCGG
TAGTCAGCCTCCTGGTCCTGACCGCCTTGGCTGAAAACGCCGAGCAAGGC
TTTGGGGGTGGCTTGGTCGCAAGCGTACTCCCGGATTTGGGGCCGACGGC
TTGTCAATTGGCGCTGGACACGCTttctttcgcgccatttcttgCTTCGG
AAACTCCCGGGCCTGGGGCAGGTTCGGAGGCGGGAAGCGTCCTGGTGGTG
GGCTTGCGGGCACTAA back to topCoding sequence (CDS) from alignment at CM002468.1:711364..712129+ >rna6520 ID=rna6520|Name=rna6520|organism=Nannochloropsis gaditana|type=CDS|length=1188bp|location=Sequence derived from alignment at CM002468.1:711364..712129+ (Nannochloropsis gaditana)
ATGACATCTTCCGATGACAGCGACCGTGCGACGCTCGTTCGGGCCATtga
cttctccctccaagggGACGCAGAGGCGAGGCGCTTCCTGGAGGACTTGT
CGACGCCGGATTTGAGCGCAGGCATTGACCCACTTTTGTCGCTGTGGAAG
GTATCCTTGGATCTTTTTACCAGTTCTCCAGATGGTACACCGCACGCATA
TTTCATTGCATGTGTGCTTCGTCGAAATGTCCGGCAACAATGGGACTTCA
CGCCTTCACAAACACGGACCCAGCTTGCCAAGGGCACTTGGGAGACCCTC
ATAGCTTACGCAGAGAAGCGTGCGGAAATACCCCCTCAAATTAATTCTTC
CCGCGGTGTACTCAGCACTTTGATAGCTGATCCAGCCGTGAATCAACTGA
TTTCGGTCGTGGTCGCACAAGCTGTGGCAATTGAGGACAGGAATGGGGAA
GCCCATGCCGCGACCCGACAATTAATCTCCATGGCCCTATCCCACGCAGG
GAGTGTGAACAAAGCGCAGCAATCTCTCTCCACTGGCCGATGGAAGCCGG
TTCGGAGGCGGGAAGCGTCCTGGTGGTGGGCTTGCGGGCACTAAATGACA
TCTTCCGATGACAGCGACCGTGCGACGCTCGTTCGGGCCATtgacttctc
cctccaagggGACGCAGAGGCGAGGCGCTTCCTGGAGGACTTGTCGACGC
CGGATTTGAGCGCAGGCATTGACCCACTTTTGTCGCTGTGGAAGGTATCC
TTGGATCTTTTTACCAGTTCTCCAGATGGTACACCGCACGCATATTTCAT
TGCATGTGTGCTTCGTCGAAATGTCCGGCAACAATGGGACTTCACGCCTT
CACAAACACGGACCCAGCTTGCCAAGGGCACTTGGGAGACCCTCATAGCT
TACGCAGAGAAGCGTGCGGAAATACCCCCTCAAATTAATTCTTCCCGCGG
TGTACTCAGCACTTTGATAGCTGATCCAGCCGTGAATCAACTGATTTCGG
TCGTGGTCGCACAAGCTGTGGCAATTGAGGACAGGAATGGGGAAGCCCAT
GCCGCGACCCGACAATTAATCTCCATGGCCCTATCCCACGCAGGGAGTGT
GAACAAAGCGCAGCAATCTCTCTCCACTGGCCGATGGAAGCCGGTTCGGA
GGCGGGAAGCGTCCTGGTGGTGGGCTTGCGGGCACTAA back to top
|