EWM24169.1, cds6500 (CDS) Nannochloropsis gaditana

Overview
NameEWM24169.1
Unique Namecds6500
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:697149..697398 -
Alignment locationCM002468.1:696909..697027 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24169.1
ProductHMG-I/HMG-Y, DNA-binding, conserved site
Orig transcript idgnl|cribi|Naga_100296g1.9843.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:697149..697398 -
CM002468.1supercontigCM002468.1:696909..697027 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR000637HMGI/Y_DNA-bd_CS
Homology
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BLAST of EWM24169.1 vs. NCBI_GenBank
Match: gi|585105543|gb|EWM24169.1| (HMG-I/HMG-Y, DNA-binding, conserved site [Nannochloropsis gaditana])

HSP 1 Score: 245.743 bits (626), Expect = 1.870e-82
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 
Query:    1 MESVKDEGQDVASREHNKQDDSEWKEEKPPFNYYEGWPDIEAECGESDPEGSQPESRSSESESKGEATVKRGRGRPRRKRPLEGTAGGSMQAGYLGEDHHLSREDSTVSSIMDGAASPGRAR 122
            MESVKDEGQDVASREHNKQDDSEWKEEKPPFNYYEGWPDIEAECGESDPEGSQPESRSSESESKGEATVKRGRGRPRRKRPLEGTAGGSMQAGYLGEDHHLSREDSTVSSIMDGAASPGRAR
Sbjct:    1 MESVKDEGQDVASREHNKQDDSEWKEEKPPFNYYEGWPDIEAECGESDPEGSQPESRSSESESKGEATVKRGRGRPRRKRPLEGTAGGSMQAGYLGEDHHLSREDSTVSSIMDGAASPGRAR 122
The following BLAST results are available for this feature:
BLAST of EWM24169.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105543|gb|EWM24169.1|1.870e-82100.00HMG-I/HMG-Y, DNA-binding, conserved site [Nannochl... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6516rna6516Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications