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Properties
| Property Name | Value |
|---|
| Product | HMG-I/HMG-Y, DNA-binding, conserved site |
| Orig transcript id | gnl|cribi|Naga_100296g1.9843.mrna |
| Orig protein id | gnl|cribi|Naga_100296g1.9843 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:696909..697756 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6516 ID=rna6516|Name=rna6516|organism=Nannochloropsis gaditana|type=mRNA|length=436bp
CAGCTGGCGTACGCGGCGGGCAGGACGGGGGGAACGATGACGGCCGCCCT
CAACGCCGCAAACGAGCGCGCGAACGAAATCTTCCGGCAGGAGAAGATTG
GCTACCTGGACATTGCCAAAGTCGTGGAGGGTGCGATGGAGAGCCACAAG
AAGGATTGGAAGGAGGCACCCTCTCTGGAGGACATTGTGGCCGTGGACGC
GTGGGCCAGAGTGCGGGTGGATGAGCTTGCGGAAAAAATGAAGTATGTGG
CGGCGTAGAGAGGGAGGGAAGGAGGGAGGGGAGGGAGGGAGGGAGGGAGG
GAAGGAGGGAGGCAAGGAAGCGCCGGGGGGGCTGTAGAAGGGAGAGGCTG
GGGATGGAGGGATGGGAAGGGATGAAGGGCGGGGGGGTGGATGGCAACGA
GTACGGAGGCAACATAAAACAAAGACGGGAAAGTGG back to topprotein sequence of rna6516 >rna6516-protein ID=rna6516-protein|Name=rna6516|organism=Nannochloropsis gaditana|type=polypeptide|length=122bp
MESVKDEGQDVASREHNKQDDSEWKEEKPPFNYYEGWPDIEAECGESDPE
GSQPESRSSESESKGEATVKRGRGRPRRKRPLEGTAGGSMQAGYLGEDHH
LSREDSTVSSIMDGAASPGRAR back to topmRNA from alignment at CM002468.1:696909..697756- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6516 ID=rna6516|Name=rna6516|organism=Nannochloropsis gaditana|type=mRNA|length=848bp|location=Sequence derived from alignment at CM002468.1:696909..697756- (Nannochloropsis gaditana)
ACAGGTCTCGTACATGGCGGGATATGATGGAGAGTTTCGGGACATAGTGG
AGAACCGTGAGTTCAGCGCCTTGTATGGGCGGGAAGTAGCTGAAAATGTA
AGTGTGGCGTCGAGATGCACTGTTTACTGGCCCCATGGAATGGTCACTCC
TCAGAGGCGCCCACATATAACAACGACGACTGAGCACACCTCCCTCACCT
ACACATCTTGCTCAGGCTCTTGCAGGTCATTTTACACACGATGAAGGTGC
GTCGTGTAGCGTAATGGATGAATGTGTGCTGGCGACTCGGCGCGCATTCT
GCACAGGAGGTCCTCACATTTCATCACACCCCTACCTACAAACACATCGC
CAGCCACAATGGAAAGCGTCAAGGACGAAGGCCAAGATGTGGCAAGCAGA
GAGCACAACAAGCAAGATGATTCGGAGTGGAAAGAGGAGAAGCCTCCATT
CAATTACTATGAAGGCTGGCCTGATATAGAGGCGGAATGCGGCGAGAGCG
ATCCGGAAGGCAGCCAACCCGAAAGTCGGTCGAGTGAGAGCGAGAGTAAA
GGCGAGGCAACGGTTAAGCGAGGACGGGGCAGACCTCGACGCAAGCGTCC
GTTGGAAGGTAAGAAACGTGAGAAGTAAGAGAAGGTGCTTACACGCTGCT
CCACCCGTGACGCCCCTGGCACGGTGAACTTGAACAAATTCCTAATCCTT
CACCCCTCGGCGCACACCACGTCTGGTAGGAACGGCAGGAGGATCGATGC
AGGCGGGGTATTTGGGGGAGGACCATCACCTCAGTCGCGAGGACTCGACA
GTGAGCTCGATCATGGACGGCGCGGCCTCGCCAGGTCGAGCACGGTGA back to topCoding sequence (CDS) from alignment at CM002468.1:696909..697756- >rna6516 ID=rna6516|Name=rna6516|organism=Nannochloropsis gaditana|type=CDS|length=738bp|location=Sequence derived from alignment at CM002468.1:696909..697756- (Nannochloropsis gaditana)
GAACGGCAGGAGGATCGATGCAGGCGGGGTATTTGGGGGAGGACCATCAC
CTCAGTCGCGAGGACTCGACAGTGAGCTCGATCATGGACGGCGCGGCCTC
GCCAGGTCGAGCACGGTGAATGGAAAGCGTCAAGGACGAAGGCCAAGATG
TGGCAAGCAGAGAGCACAACAAGCAAGATGATTCGGAGTGGAAAGAGGAG
AAGCCTCCATTCAATTACTATGAAGGCTGGCCTGATATAGAGGCGGAATG
CGGCGAGAGCGATCCGGAAGGCAGCCAACCCGAAAGTCGGTCGAGTGAGA
GCGAGAGTAAAGGCGAGGCAACGGTTAAGCGAGGACGGGGCAGACCTCGA
CGCAAGCGTCCGTTGGAAGGAACGGCAGGAGGATCGATGCAGGCGGGGTA
TTTGGGGGAGGACCATCACCTCAGTCGCGAGGACTCGACAGTGAGCTCGA
TCATGGACGGCGCGGCCTCGCCAGGTCGAGCACGGTGAATGGAAAGCGTC
AAGGACGAAGGCCAAGATGTGGCAAGCAGAGAGCACAACAAGCAAGATGA
TTCGGAGTGGAAAGAGGAGAAGCCTCCATTCAATTACTATGAAGGCTGGC
CTGATATAGAGGCGGAATGCGGCGAGAGCGATCCGGAAGGCAGCCAACCC
GAAAGTCGGTCGAGTGAGAGCGAGAGTAAAGGCGAGGCAACGGTTAAGCG
AGGACGGGGCAGACCTCGACGCAAGCGTCCGTTGGAAG back to top
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