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Properties
| Property Name | Value |
|---|
| Product | gamma-butyrobetaine dioxygenase |
| Orig transcript id | gnl|cribi|Naga_100325g5.3132.mrna |
| Orig protein id | gnl|cribi|Naga_100325g5.3132 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:644916..647806 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6497 ID=rna6497|Name=rna6497|organism=Nannochloropsis gaditana|type=mRNA|length=243bp
ATGAGCAAAATTCGTTTCCAGGTGGTCTATGCCTCGGGGCAGGACCCTGA
ACATCCGGCGGAAGAGTTGAACGTCCACAGCCCCGCCACGGAAGGGTGGC
AATCTCCGCGCTTCTGTGACTATCCTCAAGAGCTTGGCCTCTTCCTGCTT
GACACACCCTGTCACTTGTCACGTGTCCAAATCCTGTCGCATCAGTCCAA
AATCGCCACCAAAGTAGAGCTCTTCGTCGGGGACGGTTTTTGA back to topprotein sequence of rna6497 >rna6497-protein ID=rna6497-protein|Name=rna6497|organism=Nannochloropsis gaditana|type=polypeptide|length=530bp
MFVTSTFVVLFRIVVYDGASCLCSRRAPASYLSFRHAIHEANRQISMPSD
NIHAVAATPRASAPRPSPKKGRTLAAPESRLQSMRTLTQVLLHEQKGIVE
VSWQDGTRGLFHGAWLRDNCPVYFDNSTGQRTKNTLQLGPEAYVLSACAA
GPAKGQPSSGASAEFLQVTWKDGFSHAFPSAWLRQHCYETRQHHQVNPRM
WGRDLVSYFPGYVLPTLPYSDVVKVAAGSDAGWQTSAQGFVQWMVHLRDY
GVALIEDVPTTPGTVMKMADLIAYHRKTHYGNSFQVVSARKPEHLAYTPV
ELEVHTDLNYRESSPGIQLLHCLAADAAGGESTFVDGFWVAETLRRESAE
DYRTLCEVPIPFLVKDGEGFHYHKIPTICLDDAGRLVEIHFNERTRGPLE
LPAAVMGRVYRALAHFQAIACRPELCVEVKMKAGDMVAFNNRRILHGRKA
FDPRTGMRHLEGTYVDMDEFLTCLRKHGVTPLSIVRAQEGSWARVVEGTD
GLDEKGRRRETLGLVGMGGKGKGSAPRSSL back to topmRNA from alignment at CM002468.1:644916..647806+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6497 ID=rna6497|Name=rna6497|organism=Nannochloropsis gaditana|type=mRNA|length=2891bp|location=Sequence derived from alignment at CM002468.1:644916..647806+ (Nannochloropsis gaditana)
GAAAGATTTGGGAAGGAATTGTGGTACCATGGACCAGGCACCGTGGAGAT
TCGCTCGCTTTTGGGTATCGTGGTACATTTGTGGCGTCGCGGCCGACGAC
TGCGGCGTAAACCTGACGTTCTCCTGTCCTGTCCGTGCACGCGTGAATCT
GCCTCGATTCTTCCTCAAAGCGCGACAACCCAGATGGGTCGCATAACATT
ACGACATCGCAGGAGTAGTCTTTAGACATGATGCACTTGCACGATGCCTT
CTGCACATGTTTGTGACTAGTACGTTTGTTGTCCTTTTCCGCATTGTTGT
TTACGACGGTGCGTCGTGTTTATGTTCAAGACGCGCACCCGCGTCTTATC
TGAGCTTTCGCCACGCCATTCATGAAGCAAACCGACAGATATCAATGCCT
TCGGACAACATTCACGCCGTTGCTGCTACTCCTCGTGCTTCCGCaccacg
cccctctcctaAGAAGGGACGTACACTTGCGGCACCGGAATCTAGGTTGC
AAAGCATGCGCACACTCACACAGGTAAGGTACCAGACGGGGTGAAGCTCA
GGAAAATGCAAATTTGCATGCAACTTCCAACTTGTTGCCCGTATGTACCA
GCATGAGCGGTGCCGTGTGTCAACTAGAGATGCATGTGTGTATGTAGAGC
ACACTTTCACGCGAGCTGGTTGCTCTCCATGCTCCCTCGGAGACCCCCAA
AGGATCACTCCGGAcccatctccttccaagACCTTGTGCGACGGACCGTC
TATGTGTGCGTGGTATGCTGCATCGTAGCCTCCTGATAAACACTCACTCT
AAGGCGATGCATCCGTGTCTTGGTCTTCGCATTCGCTCCCTGTTTTAGGT
CCTATTGCACGAGCAAAAAGGCATCGTCGAGGTGTCCTGGCAAGACGGCA
CCCGCGGCCTCTTCCACGGCGCCTGGCTCCGCGACAATTGCCCGGTCTAC
TTCGACAATTCGACCGGACAACGCACCAAGAACACCTTGCAATTAGGTCC
CGAGGCCTACGTGCTCTCCGCGTGTGCCGCCGGCCCCGCCAAAGGTCAAC
CCTCGTCTGGCGCCTCCGCCGAATTCCTCCAAGTCACCTGGAAGGACGGA
TTCTCGCACGCCTTCCCCTCAGCCTGGCTCCGGCAGCATTGCTATGAGAC
ACGGCAGCACCATCAGGTGAACCCGCGCATGTGGGGCCGCGACTTGGTCT
CCTACTTCCCGGGGTacgtccttcccaccctcccttaCTCGGACGTGGTC
AAGGTCGCGGCTGGCAGTGACGCGGGCTGGCAGACCTCCGCACAGGGCTT
TGTCCAATGGATGGTGCACCTGCGCGACTACGGCGTGGCCCTGATCGAGG
ACGTGCCCACGACCCCCGGGACTGTCATGAAAATGGCCGACCTGATCGCC
TACCACCGGAAGACGCACTACGGCAACTCCTTCCAAGTGGTGTCGGCCCG
CAAACCCGAACATCTCGCCTACACCCCCGTGGAACTGGAGGTACACACGG
ATCTGAACTACCGGGAGAGCAGCCCGGGCATTCAGCTCTTGCACTGTCTG
GCCGCCGacgcggcggggggcgagagcACCTTCGTGGACGGCTTCTGGGT
GGCGGAGACGCTGCGTCGGGAGAGTGCCGAGGACTACCGGACCTTGTGCG
AGGTGCCCATTCCCTTCCTGGtcaaggacggggagggcttCCACTACCAC
AAGATCCCTACCATCTGCCTGGACGACGCGGGTCGCCTGGTCGAGATCCA
TTTCAACGAGCGCACCCGCGGGCCCTTGGAGTTGCCGGCGGCCGTCATGG
GCCGCGTCTATCGAGCCCTGGCGCATTTCCAGGCGATCGCCTGCCGACCT
GAGCTTTGCGTGGAGGTGAaaatgaaggcgggggacaTGGTCGCGTTCAA
CAACCGGCGCATCTTGCACGGGCGGAAGGCCTTCGACCCTCGGACGGGCA
TGCGGCACCTGGAGGGGACCTACGTGGACATGGACGAGTTCCTGACCTGC
CTGCGCAAGCATGGCGTTACCCCCCTGAGCATTGTGCGGGCACAGGAAGG
GAGCTGGGCCcgggtggtggaagggacggacggcttggatgagaagggga
ggcggcgggagaCCCTTGGCctggtggggatgggcgggaaggggaaaggg
tctGCGCCGCGGTCGTCTCTCTGAGGTGCCCACGGGAGCGAAATTTAGAC
ATGAGAAAGGAAGTGCGTTAGGAAGAGAGTGATTTGTGGGCAAATTTATT
GAAATGTGAGTCTGATGATTAGTCACTATTTCGAAGTACTGAATACACGT
ACGTAGTAATGACACAGACGTTTTGGCGAAGGCTTATAAGAATTTTGCTG
CTGTGGACATCATTGTCTGGAGTGCCCGGCGCTTCTCATCAAGCAATGAG
GACCATGCAGCCAAAATAAATAAATAAGAAACGGGTTCGGTGTTCAGTAA
AGTGTGAGCTAGCGAGGAAGCAAGATAGGCGCGAAGCCGGTCGGTTAGGT
CGGAGGGGTGCTGGGCTGAGTGACAATTTTAGAAGGGAGAATGGAGTGAT
GCAGGTGCGTGGACGGCCGTCGGAAGGAGACTCAGACGTGCGTCGGGCTC
AGCGCGATAGGGGCGGCGCTAGCGACATCGGGGATCGGGAGACTGCGATG
CGACGCGGCAacggggagatggaggcgaatGACACGAGAGGCTAGGTAAA
TGAAGGAAATGTGAGGAAGCTCTCTGGTTGCGTGAGATGGGGACGGGTGG
TCAGAGTGAAGGTGCGTCTCCTGCGTGCGATCGAGGCGAAATTTTACAAC
ACATCTCAAAGAGAAGAAATTTGGCGGCGAAATTTTACAACAGTCctcaa
aaagaaaaaaaagaataaGGCAACTACCGCGGGCCCTTGGA back to topCoding sequence (CDS) from alignment at CM002468.1:644916..647806+ >rna6497 ID=rna6497|Name=rna6497|organism=Nannochloropsis gaditana|type=CDS|length=3186bp|location=Sequence derived from alignment at CM002468.1:644916..647806+ (Nannochloropsis gaditana)
ATGTTTGTGACTAGTACGTTTGTTGTCCTTTTCCGCATTGTTGTTTACGA
CGGTGCGTCGTGTTTATGTTCAAGACGCGCACCCGCGTCTTATCTGAGCT
TTCGCCACGCCATTCATGAAGCAAACCGACAGATATCAATGCCTTCGGAC
AACATTCACGCCGTTGCTGCTACTCCTCGTGCTTCCGCaccacgcccctc
tcctaAGAAGGGACGTACACTTGCGGCACCGGAATCTAGGTTGCAAAGCA
TGCGCACACTCACACAGGTCCTATTGCACGAGCAAAAAGGCATCGTCGAG
GTGTCCTGGCAAGACGGCACCCGCGGCCTCTTCCACGGCGCCTGGCTCCG
CGACAATTGCCCGGTCTACTTCGACAATTCGACCGGACAACGCACCAAGA
ACACCTTGCAATTAGGTCCCGAGGCCTACGTGCTCTCCGCGTGTGCCGCC
GGCCCCGCCAAAGGTCAACCCTCGTCTGGCGCCTCCGCCGAATTCCTCCA
AGTCACCTGGAAGGACGGATTCTCGCACGCCTTCCCCTCAGCCTGGCTCC
GGCAGCATTGCTATGAGACACGGCAGCACCATCAGGTGAACCCGCGCATG
TGGGGCCGCGACTTGGTCTCCTACTTCCCGGGGTacgtccttcccaccct
cccttaCTCGGACGTGGTCAAGGTCGCGGCTGGCAGTGACGCGGGCTGGC
AGACCTCCGCACAGGGCTTTGTCCAATGGATGGTGCACCTGCGCGACTAC
GGCGTGGCCCTGATCGAGGACGTGCCCACGACCCCCGGGACTGTCATGAA
AATGGCCGACCTGATCGCCTACCACCGGAAGACGCACTACGGCAACTCCT
TCCAAGTGGTGTCGGCCCGCAAACCCGAACATCTCGCCTACACCCCCGTG
GAACTGGAGGTACACACGGATCTGAACTACCGGGAGAGCAGCCCGGGCAT
TCAGCTCTTGCACTGTCTGGCCGCCGacgcggcggggggcgagagcACCT
TCGTGGACGGCTTCTGGGTGGCGGAGACGCTGCGTCGGGAGAGTGCCGAG
GACTACCGGACCTTGTGCGAGGTGCCCATTCCCTTCCTGGtcaaggacgg
ggagggcttCCACTACCACAAGATCCCTACCATCTGCCTGGACGACGCGG
GTCGCCTGGTCGAGATCCATTTCAACGAGCGCACCCGCGGGCCCTTGGAG
TTGCCGGCGGCCGTCATGGGCCGCGTCTATCGAGCCCTGGCGCATTTCCA
GGCGATCGCCTGCCGACCTGAGCTTTGCGTGGAGGTGAaaatgaaggcgg
gggacaTGGTCGCGTTCAACAACCGGCGCATCTTGCACGGGCGGAAGGCC
TTCGACCCTCGGACGGGCATGCGGCACCTGGAGGGGACCTACGTGGACAT
GGACGAGTTCCTGACCTGCCTGCGCAAGCATGGCGTTACCCCCCTGAGCA
TTGTGCGGGCACAGGAAGGGAGCTGGGCCcgggtggtggaagggacggac
ggcttggatgagaaggggaggcggcgggagaCCCTTGGCctggtggggat
gggcgggaaggggaaagggtctGCGCCGCGGTCGTCTCTCTGAATGTTTG
TGACTAGTACGTTTGTTGTCCTTTTCCGCATTGTTGTTTACGACGGTGCG
TCGTGTTTATGTTCAAGACGCGCACCCGCGTCTTATCTGAGCTTTCGCCA
CGCCATTCATGAAGCAAACCGACAGATATCAATGCCTTCGGACAACATTC
ACGCCGTTGCTGCTACTCCTCGTGCTTCCGCaccacgcccctctcctaAG
AAGGGACGTACACTTGCGGCACCGGAATCTAGGTTGCAAAGCATGCGCAC
ACTCACACAGGTCCTATTGCACGAGCAAAAAGGCATCGTCGAGGTGTCCT
GGCAAGACGGCACCCGCGGCCTCTTCCACGGCGCCTGGCTCCGCGACAAT
TGCCCGGTCTACTTCGACAATTCGACCGGACAACGCACCAAGAACACCTT
GCAATTAGGTCCCGAGGCCTACGTGCTCTCCGCGTGTGCCGCCGGCCCCG
CCAAAGGTCAACCCTCGTCTGGCGCCTCCGCCGAATTCCTCCAAGTCACC
TGGAAGGACGGATTCTCGCACGCCTTCCCCTCAGCCTGGCTCCGGCAGCA
TTGCTATGAGACACGGCAGCACCATCAGGTGAACCCGCGCATGTGGGGCC
GCGACTTGGTCTCCTACTTCCCGGGGTacgtccttcccaccctcccttaC
TCGGACGTGGTCAAGGTCGCGGCTGGCAGTGACGCGGGCTGGCAGACCTC
CGCACAGGGCTTTGTCCAATGGATGGTGCACCTGCGCGACTACGGCGTGG
CCCTGATCGAGGACGTGCCCACGACCCCCGGGACTGTCATGAAAATGGCC
GACCTGATCGCCTACCACCGGAAGACGCACTACGGCAACTCCTTCCAAGT
GGTGTCGGCCCGCAAACCCGAACATCTCGCCTACACCCCCGTGGAACTGG
AGGTACACACGGATCTGAACTACCGGGAGAGCAGCCCGGGCATTCAGCTC
TTGCACTGTCTGGCCGCCGacgcggcggggggcgagagcACCTTCGTGGA
CGGCTTCTGGGTGGCGGAGACGCTGCGTCGGGAGAGTGCCGAGGACTACC
GGACCTTGTGCGAGGTGCCCATTCCCTTCCTGGtcaaggacggggagggc
ttCCACTACCACAAGATCCCTACCATCTGCCTGGACGACGCGGGTCGCCT
GGTCGAGATCCATTTCAACGAGCGCACCCGCGGGCCCTTGGAGTTGCCGG
CGGCCGTCATGGGCCGCGTCTATCGAGCCCTGGCGCATTTCCAGGCGATC
GCCTGCCGACCTGAGCTTTGCGTGGAGGTGAaaatgaaggcgggggacaT
GGTCGCGTTCAACAACCGGCGCATCTTGCACGGGCGGAAGGCCTTCGACC
CTCGGACGGGCATGCGGCACCTGGAGGGGACCTACGTGGACATGGACGAG
TTCCTGACCTGCCTGCGCAAGCATGGCGTTACCCCCCTGAGCATTGTGCG
GGCACAGGAAGGGAGCTGGGCCcgggtggtggaagggacggacggcttgg
atgagaaggggaggcggcgggagaCCCTTGGCctggtggggatgggcggg
aaggggaaagggtctGCGCCGCGGTCGTCTCTCTGA back to top
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