EWM24209.1, cds6462 (CDS) Nannochloropsis gaditana

Overview
NameEWM24209.1
Unique Namecds6462
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:600914..602254 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24209.1
Productelmo domain-containing protein a
Orig transcript idgnl|cribi|Naga_100217g8.6978.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:600914..602254 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR006816Engulfment_cell_motility_ELMO
Homology
BLAST of EWM24209.1 vs. NCBI_GenBank
Match: gi|585105598|gb|EWM24209.1| (elmo domain-containing protein a [Nannochloropsis gaditana])

HSP 1 Score: 900.197 bits (2325), Expect = 0.000e+0
Identity = 446/446 (100.00%), Postives = 446/446 (100.00%), Query Frame = 0
Query:    1 MVAPVLVAYEFIGPADAPETGFSSSFELFASDSPTDVLTVLALREAFPYVGDFHFRAKIPFQETQYAWLDLTEEDTPLPLLTEESDQPVVAIRVLPLAFEDEDEDRQGKNGGELDFSGPDLDQDIVESCVLGEGGGSRGGGGDALGVGGGRDASFSSPGGSYGNWAHQLKGVGESVITSDVARDLTKKGLKVGKQVGKQVNKLWRLVGEGLGGGERGEGGAGDRREGRSLVPEGPSPSSVRYLRRWEDALVTPPDAETLLALWKALFPGAASRDEGARARSRQWRRAGCEEEDPLREFRGTGSMCVRCLTYFARTYPEKTQDILERYEAGKKEGCGNQEMYPLIGVSNSLILIMVDIFKLRDARYVHVQSTMWNLFEGGGYGTMEEVFSAALAYLDRRWMETEASIEGFSTLARETRRALEGVLGQGPLNLPHFQALAQDAGLGWR 446
            MVAPVLVAYEFIGPADAPETGFSSSFELFASDSPTDVLTVLALREAFPYVGDFHFRAKIPFQETQYAWLDLTEEDTPLPLLTEESDQPVVAIRVLPLAFEDEDEDRQGKNGGELDFSGPDLDQDIVESCVLGEGGGSRGGGGDALGVGGGRDASFSSPGGSYGNWAHQLKGVGESVITSDVARDLTKKGLKVGKQVGKQVNKLWRLVGEGLGGGERGEGGAGDRREGRSLVPEGPSPSSVRYLRRWEDALVTPPDAETLLALWKALFPGAASRDEGARARSRQWRRAGCEEEDPLREFRGTGSMCVRCLTYFARTYPEKTQDILERYEAGKKEGCGNQEMYPLIGVSNSLILIMVDIFKLRDARYVHVQSTMWNLFEGGGYGTMEEVFSAALAYLDRRWMETEASIEGFSTLARETRRALEGVLGQGPLNLPHFQALAQDAGLGWR
Sbjct:    1 MVAPVLVAYEFIGPADAPETGFSSSFELFASDSPTDVLTVLALREAFPYVGDFHFRAKIPFQETQYAWLDLTEEDTPLPLLTEESDQPVVAIRVLPLAFEDEDEDRQGKNGGELDFSGPDLDQDIVESCVLGEGGGSRGGGGDALGVGGGRDASFSSPGGSYGNWAHQLKGVGESVITSDVARDLTKKGLKVGKQVGKQVNKLWRLVGEGLGGGERGEGGAGDRREGRSLVPEGPSPSSVRYLRRWEDALVTPPDAETLLALWKALFPGAASRDEGARARSRQWRRAGCEEEDPLREFRGTGSMCVRCLTYFARTYPEKTQDILERYEAGKKEGCGNQEMYPLIGVSNSLILIMVDIFKLRDARYVHVQSTMWNLFEGGGYGTMEEVFSAALAYLDRRWMETEASIEGFSTLARETRRALEGVLGQGPLNLPHFQALAQDAGLGWR 446          
BLAST of EWM24209.1 vs. NCBI_GenBank
Match: gi|299469681|emb|CBN76535.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 104.76 bits (260), Expect = 1.356e-20
Identity = 70/268 (26.12%), Postives = 116/268 (43.28%), Query Frame = 0
Query:  182 ARDLTKKGLKVGKQVGKQVNKLWRLVGEGLGGGERGEGGAGDRREGRSLVPEGPSPSSVRYLRRWEDALVTPPDAET------LLALWKALFPGAASRDEGARARSRQWRRAGCEEEDPLREFRGTGSMCVRCLTYFARTYPEKTQDILERYEAGKKEGCGNQEMYPLIGVSNSLILIMVDIFKLRDARYVHVQSTMWNLFEGGGYGTMEEVFSAALAYLDRRWMETEASIEGFSTLARETRRALEGVLGQGPLNLPHFQALAQDAGL 443
             +D  KK  +V K +G    K+W  + +G+GG                  P  PS  ++  L    + L TP  A +      L  +W  LFP     DE   A S +W+ AG +E +   +FRGTG + ++ + +F + Y  K   +       + +  G    YP   V+N+L L++ D+ ++R  ++   +   W +F+    G   E+F  A   LD  W E  A    F  +   T+  +  +L   P NLP F   A++ G+
Sbjct:  289 VKDFQKKTSQVAKTMGFGAKKMWNAINKGVGG------------------PVVPSEEAMENLHELANFLGTPFSATSREHVNDLGKVWMCLFPD----DEFEGAESPRWQEAGFQESNVSLDFRGTGVLALKSMVFFCQEYDRKALSLC------RAQSAGGSSHYPWAVVANNLTLMLADVLEMRANQFASSRKGYWGVFD--RRGAFFEIFCMAFRLLDHTWAERGAKRSNFGQIIGYTKSVIVELLESNPPNLPAFMGQAEEMGM 526          

HSP 2 Score: 65.855 bits (159), Expect = 5.855e-8
Identity = 41/112 (36.61%), Postives = 55/112 (49.11%), Query Frame = 0
Query:    1 MVAPVLVAYEFIGPADAPETGFSSSFELFASDSPTDVLTVLALREAFPYVGDFHFRAKIPFQE--TQYAWLDLTEEDTPLPLLTEE-----------SDQPVVAIRVLPLAF 99
            M + VLV Y   G  D PETG  SSF +    +P   LT+  LRE FP+ G FHFR K+P     + Y W+DLT +   +  L E              Q  V +++LP+ F
Sbjct:    1 MSSSVLVCYVIQGDDDDPETGVQSSFRV-DRPTPPRTLTLFRLREMFPFEGTFHFRLKVPDANGLSDYCWVDLTTDGDDILELAENLGGLEGGNSGGHPQQRVHLKILPIDF 111          
BLAST of EWM24209.1 vs. NCBI_GenBank
Match: gi|1026092324|ref|XP_016545344.1| (PREDICTED: ELMO domain-containing protein A isoform X4 [Capsicum annuum])

HSP 1 Score: 83.1889 bits (204), Expect = 2.073e-14
Identity = 61/192 (31.77%), Postives = 95/192 (49.48%), Query Frame = 0
Query:  253 PPDAETLLALWKALFPGAASRDEGARARSRQWRRAGCEEEDPLREFRGTGSMCVRCLTYFARTYPEKTQDILERYEAGKKEGCGNQEMYP--LIGVSNSLILI-MVDIFKLRDARYVHVQSTMWNLFEGGGYGTMEEVFSAALAYLDRRWMETEASIEGFSTLARETRRALEGVLGQGPL----NLPHFQAL 437
            P   E L ALWKA FP     +E     S QW+  G + +DP  +FRG G + +  L YFAR +P   QD+L+     K+EG      YP  + GV+ + +LI M+DI  ++    V      +  F  G     + ++      +D++W+   AS   F+T+ + TRR +E  L QG +    +LP ++ L
Sbjct:   85 PEHREALRALWKAAFPV----EELHGLISEQWKEMGWQGKDPSTDFRGAGFISLENLLYFARNFPRSFQDLLQ-----KQEGDRALWEYPFAVAGVNITFMLIQMLDIGAIKPRNLV---GATFLKFLAGNESAFDLLYCITFKLMDQQWLAMHASYMDFNTVMKSTRRRIERELLQGNIKRLEDLPSYRLL 264          
BLAST of EWM24209.1 vs. NCBI_GenBank
Match: gi|1109273668|ref|XP_019160984.1| (PREDICTED: ELMO domain-containing protein A-like isoform X2 [Ipomoea nil] >gi|1109273670|ref|XP_019160985.1| PREDICTED: ELMO domain-containing protein A-like isoform X2 [Ipomoea nil])

HSP 1 Score: 83.1889 bits (204), Expect = 2.657e-14
Identity = 54/209 (25.84%), Postives = 97/209 (46.41%), Query Frame = 0
Query:  221 AGDRREGRSLVPEGPSPSSVRYLRRWEDALVTPPDA------ETLLALWKALFPGAASRDEGARARSRQWRRAGCEEEDPLREFRGTGSMCVRCLTYFARTYPEKTQDILERYEAGKKEGCGNQEM--YPLIGVSNSLILIMVDIFKLRDARYVHVQSTMWNLFEGGGYGTMEEVFSAALAYLDRRWMETEASIEGFSTLARETRRALE 421
               RR G + +    +P+    L+R  + +    D+      E L+ LW A FPG    +E     S QW+  G + +DP  +FRG G + +  L YFAR++P+  QD+L + E       GN+ +  YP      ++  +++ +  L   +  ++    +  F        + ++  A   +D++W+   AS   F+T+ + TRR LE
Sbjct:   46 CAQRRVGDARLIFDLTPTQKECLQRLHNRIDIAYDSSIHEHQEALMDLWNAAFPG----EELCGLISEQWKEMGWQGKDPSTDFRGCGLLSLENLLYFARSFPKSFQDLLHKLE-------GNRAIWEYPFAVAGVNITFMLIQMLDLESIKPRNLVGATFLKFLAENESAFDLLYCIAFKLMDQQWLAMRASYMDFNTVIKATRRQLE 243          
BLAST of EWM24209.1 vs. NCBI_GenBank
Match: gi|1191673805|gb|OTG25770.1| (putative ELMO/CED-12 family protein [Helianthus annuus])

HSP 1 Score: 82.8037 bits (203), Expect = 3.236e-14
Identity = 68/228 (29.82%), Postives = 106/228 (46.49%), Query Frame = 0
Query:  225 REGRSLVPEGPSPSSVRYLRRWEDAL------VTPPDAETLLALWKALFPGAASRDEGARARSRQWRRAGCEEEDPLREFRGTGSMCVRCLTYFARTYPEKTQDILERYEAGKKEGCGNQEMYP--LIGVSNSLILI-MVDIFKLRDARYVHVQSTMWNLFEGGGYGTMEEVFSAALAYLDRRWMETEASIEGFSTLARETRRALEGVLGQGPLN----LPHFQALAQ 439
            REG S      +P+    L+R +  L        P   E L ALWKA FP    RD      S QW+  G + +DP  +FRG G + +  L YFAR +P+  QD+L      K+EG      YP  + GV+ + +LI M+D+  ++   +V   +T   L         + ++      +D +W++  AS   F+ + + TRR LE  L Q  +     LP +  L++
Sbjct:   51 REGDSRPSFDLTPAQEHCLQRLQTRLDIAYDGSIPEHQEALRALWKAAFPEEELRD----IISEQWKEMGWQGKDPSTDFRGGGFISLENLLYFARNFPKSFQDLLR-----KQEGVRAMWEYPFAVAGVNITFMLIQMLDLEAVKPQSFVG--ATFLKLL-SENESAFDLLYCITFKLMDHQWLDMHASYMDFNAVMKSTRRQLERELLQEDITRLEELPSYNLLSR 266          
BLAST of EWM24209.1 vs. NCBI_GenBank
Match: gi|1026092318|ref|XP_016545341.1| (PREDICTED: ELMO domain-containing protein A isoform X1 [Capsicum annuum])

HSP 1 Score: 83.1889 bits (204), Expect = 3.240e-14
Identity = 61/192 (31.77%), Postives = 95/192 (49.48%), Query Frame = 0
Query:  253 PPDAETLLALWKALFPGAASRDEGARARSRQWRRAGCEEEDPLREFRGTGSMCVRCLTYFARTYPEKTQDILERYEAGKKEGCGNQEMYP--LIGVSNSLILI-MVDIFKLRDARYVHVQSTMWNLFEGGGYGTMEEVFSAALAYLDRRWMETEASIEGFSTLARETRRALEGVLGQGPL----NLPHFQAL 437
            P   E L ALWKA FP     +E     S QW+  G + +DP  +FRG G + +  L YFAR +P   QD+L+     K+EG      YP  + GV+ + +LI M+DI  ++    V      +  F  G     + ++      +D++W+   AS   F+T+ + TRR +E  L QG +    +LP ++ L
Sbjct:   96 PEHREALRALWKAAFPV----EELHGLISEQWKEMGWQGKDPSTDFRGAGFISLENLLYFARNFPRSFQDLLQ-----KQEGDRALWEYPFAVAGVNITFMLIQMLDIGAIKPRNLV---GATFLKFLAGNESAFDLLYCITFKLMDQQWLAMHASYMDFNTVMKSTRRRIERELLQGNIKRLEDLPSYRLL 275          
BLAST of EWM24209.1 vs. NCBI_GenBank
Match: gi|661887016|emb|CDP09425.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 82.4185 bits (202), Expect = 5.001e-14
Identity = 59/229 (25.76%), Postives = 103/229 (44.98%), Query Frame = 0
Query:  221 AGDRREGRSLVPEGPSPSSVRYLRRWEDALVTPPDA------ETLLALWKALFPGAASRDEGARARSRQWRRAGCEEEDPLREFRGTGSMCVRCLTYFARTYPEKTQDILERYEAGKKEGCGNQEMYPLIGVSNSLILIMVDIFKLRDARYVHVQSTMWNLFEGGGYGTMEEVFSAALAYLDRRWMETEASIEGFSTLARETRRALEGVLGQGPL----NLPHFQALAQ 439
               RRE  +      +P+    L+R ++ +  P D+      E L ALW A FPG    ++     S QW+  G + +DP  +FRG G + +  L YFAR +P+  QD+L      K+EG      YP      ++  +++ +  L   +  +     +  F        + ++      +D +W+   AS   F+T+ + TRR LE  L Q  +    +LP ++ L++
Sbjct:   48 CAQRRESDARPSFDLTPAQEECLQRLQNRIDVPYDSSNVEHQEALRALWYAAFPG----EQLHGLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYFARNFPKSFQDLLR-----KQEGDRAMWEYPFAVAGVNITFMLIQMLDLEAVKPRNFVGATFLKFLAENESAFDLLYCITFKLMDNQWLTMHASYMDFNTVMKATRRQLENELLQEDITRLEDLPSYRLLSR 267          
BLAST of EWM24209.1 vs. NCBI_GenBank
Match: gi|1026092320|ref|XP_016545342.1| (PREDICTED: ELMO domain-containing protein A isoform X2 [Capsicum annuum])

HSP 1 Score: 82.0333 bits (201), Expect = 6.470e-14
Identity = 59/185 (31.89%), Postives = 90/185 (48.65%), Query Frame = 0
Query:  253 PPDAETLLALWKALFPGAASRDEGARARSRQWRRAGCEEEDPLREFRGTGSMCVRCLTYFARTYPEKTQDILERYEAGKKEGCGNQEMYP--LIGVSNSLILI-MVDIFKLRDARYVHVQSTMWNLFEGGGYGTMEEVFSAALAYLDRRWMETEASIEGFSTLARETRRALEGVLGQGPLNLPHF 434
            P   E L ALWKA FP     +E     S QW+  G + +DP  +FRG G + +  L YFAR +P   QD+L+     K+EG      YP  + GV+ + +LI M+DI  ++    V      +  F  G     + ++      +D++W+   AS   F+T+ + TRR +E  L QG +    F
Sbjct:   96 PEHREALRALWKAAFPV----EELHGLISEQWKEMGWQGKDPSTDFRGAGFISLENLLYFARNFPRSFQDLLQ-----KQEGDRALWEYPFAVAGVNITFMLIQMLDIGAIKPRNLV---GATFLKFLAGNESAFDLLYCITFKLMDQQWLAMHASYMDFNTVMKSTRRRIERELLQGNIKRKIF 268          
BLAST of EWM24209.1 vs. NCBI_GenBank
Match: gi|1109273658|ref|XP_019160979.1| (PREDICTED: ELMO domain-containing protein A-like isoform X1 [Ipomoea nil] >gi|1109273660|ref|XP_019160980.1| PREDICTED: ELMO domain-containing protein A-like isoform X1 [Ipomoea nil] >gi|1109273662|ref|XP_019160981.1| PREDICTED: ELMO domain-containing protein A-like isoform X1 [Ipomoea nil] >gi|1109273664|ref|XP_019160982.1| PREDICTED: ELMO domain-containing protein A-like isoform X1 [Ipomoea nil] >gi|1109273666|ref|XP_019160983.1| PREDICTED: ELMO domain-containing protein A-like isoform X1 [Ipomoea nil])

HSP 1 Score: 82.0333 bits (201), Expect = 7.929e-14
Identity = 54/209 (25.84%), Postives = 97/209 (46.41%), Query Frame = 0
Query:  221 AGDRREGRSLVPEGPSPSSVRYLRRWEDALVTPPDA------ETLLALWKALFPGAASRDEGARARSRQWRRAGCEEEDPLREFRGTGSMCVRCLTYFARTYPEKTQDILERYEAGKKEGCGNQEM--YPLIGVSNSLILIMVDIFKLRDARYVHVQSTMWNLFEGGGYGTMEEVFSAALAYLDRRWMETEASIEGFSTLARETRRALE 421
               RR G + +    +P+    L+R  + +    D+      E L+ LW A FPG    +E     S QW+  G + +DP  +FRG G + +  L YFAR++P+  QD+L + E       GN+ +  YP      ++  +++ +  L   +  ++    +  F        + ++  A   +D++W+   AS   F+T+ + TRR LE
Sbjct:   67 CAQRRVGDARLIFDLTPTQKECLQRLHNRIDIAYDSSIHEHQEALMDLWNAAFPG----EELCGLISEQWKEMGWQGKDPSTDFRGCGLLSLENLLYFARSFPKSFQDLLHKLE-------GNRAIWEYPFAVAGVNITFMLIQMLDLESIKPRNLVGATFLKFLAENESAFDLLYCIAFKLMDQQWLAMRASYMDFNTVIKATRRQLE 264          
BLAST of EWM24209.1 vs. NCBI_GenBank
Match: gi|1191640372|gb|OTF92374.1| (putative ELMO domain-containing protein [Helianthus annuus])

HSP 1 Score: 81.6481 bits (200), Expect = 8.689e-14
Identity = 59/210 (28.10%), Postives = 91/210 (43.33%), Query Frame = 0
Query:  217 GEGGAGDRREGRSLVPEGPSPSSVRYLRRWEDAL--VTPPDAETLLALWKALFPGAASRDEGARARSRQWRRAGCEEEDPLREFRGTGSMCVRCLTYFARTYPEKTQDILERYEAGKKEGCGNQEMYPLIGVSNSLILIMVDIFKLRDARYVHVQSTMWNLFEGGGYGTMEEVFSAALAYLDRRWMETEASIEGFSTLARETRRALEGVL 424
             +G   D R    L PE      +R   R + A     P   E+LLALWKA FP     +E     S QW+  G + +DP  +FRG G + +  L YFAR +P+  QD+L      K+EG  +   YP      ++  +++ +  L   +   +    +  F          ++  A A +D  W+   AS   F+ + + TR  LE  L
Sbjct:   47 AQGTEDDSRPSFDLTPEQED-CLMRLQNRLDIAYDSSVPEHQESLLALWKAAFP----EEELHGLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYFARNFPKSFQDLLR-----KQEGDRSMWEYPFAVAGVNITFMLIQMLDLEAVKPRTLVGATFLKFLSDNESAFNLLYCVAFALMDHLWLAMHASYMDFNAVMKLTRHQLEKEL 246          
The following BLAST results are available for this feature:
BLAST of EWM24209.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105598|gb|EWM24209.1|0.000e+0100.00elmo domain-containing protein a [Nannochloropsis ... [more]
gi|299469681|emb|CBN76535.1|1.356e-2026.12conserved unknown protein [Ectocarpus siliculosus][more]
gi|1026092324|ref|XP_016545344.1|2.073e-1431.77PREDICTED: ELMO domain-containing protein A isofor... [more]
gi|1109273668|ref|XP_019160984.1|2.657e-1425.84PREDICTED: ELMO domain-containing protein A-like i... [more]
gi|1191673805|gb|OTG25770.1|3.236e-1429.82putative ELMO/CED-12 family protein [Helianthus an... [more]
gi|1026092318|ref|XP_016545341.1|3.240e-1431.77PREDICTED: ELMO domain-containing protein A isofor... [more]
gi|661887016|emb|CDP09425.1|5.001e-1425.76unnamed protein product [Coffea canephora][more]
gi|1026092320|ref|XP_016545342.1|6.470e-1431.89PREDICTED: ELMO domain-containing protein A isofor... [more]
gi|1109273658|ref|XP_019160979.1|7.929e-1425.84PREDICTED: ELMO domain-containing protein A-like i... [more]
gi|1191640372|gb|OTF92374.1|8.689e-1428.10putative ELMO domain-containing protein [Helianthu... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6478rna6478Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications