rna6478, rna6478 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6478
Unique Name	rna6478
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3579
Alignment location	CM002468.1:600509..602353 +

Link to JBrowse

Properties


Property Name	Value
Product	elmo domain-containing protein a
Orig transcript id	gnl\|cribi\|Naga_100217g8.6978.mrna
Orig protein id	gnl\|cribi\|Naga_100217g8.6978
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:600509..602353 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100217g8	gene6260	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6478	rna6478-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24209.1	cds6462	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:600509..602353+
coding sequence from alignment at CM002468.1:600509..602353+

mRNA sequence

>rna6478 ID=rna6478|Name=rna6478|organism=Nannochloropsis gaditana|type=mRNA|length=3579bp
ATGCAAGGCCTTTTAAACTCAGAATATTGGAACTCGTCCATTTTACACCA
AGGCACACGCGAGTCGGGCATGGTGAATCCAGATGGGGGTAATATGGACG
TTCTTACTGGGCGAATCACCCGCGAAGTCTACTTCGACCCCAGCAAGCTG
ATAGGAAAGGATGGGAAAGTCCTTGCCAGCACGGTCGACGAGACAAAGCA
GGCGGAGATGCTCTACAAGCCGGTCAAAGTCGTGCAAGAGCTTGCCAGCG
AGAAAATTGTGCTTGTTCGGGATGAATTTGATCAAGTGCACCGCCTCACG
TCCGAGGGTCTTTTGACAGTCAAGGCGGAAGCGAAGGAGGGAGTGCCAGA
TATACTGGACTTGAATGATTTCTCAGAGATGTCCCTCCTCGAGAGCCTCC
GATCCCGGTACGCGCGCGACGAGGTGTACACTTTCGTGGGGCCCATCCTC
ATCTCCATCAACCCCTACAAGTGGAATCATGCTCTCTACTCGGAATCGGC
GATGATTCACCACCACACGCAAGCCAAGGAGCACCTGGCCCCCCACCTCT
TCAAGGTCGCGGACGCCTCCTACGTGGCCTTCATCAACGACGGATCCAAG
CTGCCGGCGAACCAATCGATTATCATCAGCGGGGAGAGCGGGGCGGGAAA
AACGGAGGCGATGAAGATTATCATGCAGTACTTGGCCCGCATCACGCATT
ACCGGGTCGCCGCCACCCCGGACTCCACGAGTGATTCTCTGACCGGTGCG
AGTGCAGCGATCCTGGGAGCGGCAGCTTCGGGGACCACGGCCGCGGCCGC
GCCGCATTTGGAGGTCGGGGAGCTAGAGAAGAAAGTCTTGTCCACCAACC
CCTTCCTGGAGAGCTTCGGCAACGCCAAGACCCTCATGAACGACAACTCC
TCCCGCTTTGGGAAATACGTCAAGATACAGTTCGGTGCAACGGGGAGAAT
TGTCGGGGCGGAGATCACCAACTACCTGTTGGAAAAAACACGAATCGTGC
GACAGGCGGAGGGAGAGAGGAATTTCCACATTTTCTACCAAATTATCCGA
GGGGGCGACAAGGACCTCTTGGCGGATTTGTGCTTAGACGAAAAGGACGG
GACTGGAGCCTTCCGATACCTCACGCACGGGCACTGCACGGACATTGCGG
GAAAATCTGACGCGGACGATTTCAAGGTGACGATGGAATGCATGACCGCC
ATTGGATTGGACGCTCGCCTCCAGCGAACCATGCTGGAATTGGTGGCTGC
GGTCTTGCATCTGGGCAACGTCAGCTTCCAGGACGCAGGCGAGGGCGGCT
CGGTGCCGGAGCCGTCGACTCAGAGACACCTGGAGCTGGCCGCCCGCTTC
TTGAACCTGGACGCGGGGGAGATGCAAAAAACCTTCTGCTCGAAGCAGAT
CACCACCCGGAAAGACGAGACGGTGGTCAAACCCAACGACGCGGCAGAGG
CCGCAGACAAGCGCGACACGCTGGCAAAAACGGTCTATTCCTGTGTCTTC
AATTGGCTAGTCCGCCGCCTGAATATGACAATCGCGGCGGATAAATGTTG
GGGATTCATGGGCGTGCTGGATATCTACGGCTTCGAGGCCTTCGAGCACA
ACTCGTTCGAGCAGCTTCTCATCAACTTTGCCAACGAGACGCTTCAAAAC
CAGTTCAATCGGCACATCTTCGAGATGGAGCAGGAGGATTACGAGCGGGA
AGGGATCGACTGGAGCTACGTCTCTTTCAACGACAACCAACCGTGCTTGG
CACTGCTCGACTCTCGGTATTACCGGGAAGCCGGGGCTCCGGAAGGGGAG
GCTGCAGGAGGGGCCGTGGCTGCCACAGGAGGAAAAACGGGGGCTTCCTG
CTTGTTCAACATTTTGGACGACGTCAAGAGTGTGGGCGGGGGCCCACGCA
AAGCGGACGCCCGCTTCCTATCGGCGTTGCACACAACGTTCGCAGGAAAA
AGCGAAGCGTACGTGCGGCCTCGCTTGCACTCCGACGTGTGCTTCGGGGT
CAAGCACTACGCCGGCCTCGTCTTGTACGAGGTCGACGGCTTTGTGGAGC
GGAATGTGGAGAACCTGCACCAGAATGTGCGGGCCTTGGCATTATCCAGC
ACCGATCCGCTCATTCGTGACGACATTCTGTTGGACGTAAAACTCTTTGA
AGAGCGGTCGCACAGGAAAAAGGGAGGTGCTGGCGCTGGACCGGGGAGCG
CGGGACGAGGGGGGAAAGGAGGGGGTTCCCGATTGCGGGAGGCCTCTTTG
TCGTCCCAATTCCGAAGCTCGCTGGCGACCTTGGTAGAAACACTGGACAT
GACCACCCCGCGATACGTGCGCTGCGTCAAACCCAATCACGAGAAGCTGT
CGGGGCATTTTGACTCCAAGGAAATCCTGAGGCAGCTGAGGTATGCAGGG
ATGATGGAGGCGATTCGCATCCGTCAACAAGGCTACGCATTGCGCGAGCC
TCATTCGGTCATGTACAAACAATTCGCTCGCCTAGTTCCCGGGTGTGCAA
GTCTCCCTGACTTGGTGGAGAAGCTTTCCCGGATGCTGAATGTGGACGCG
CGGGAATGGCAGATGGGGGTGAGCAAGGTCTTCATGCGCAAGTCCATGGC
GGAAAAACTCGCGCGCCTCCTGGAGCTGCGTGTCAAGTTCGGCGCTCACA
CCATTCAAAGAGCGTGGACTAGACTGCGCCGGCACCGCGCTGCTGTCAGA
CTCCAGGCTACCATCCGGAAGTATCAGACTCGTCGGCGCTTTCTCGCATT
TGTCAGAGGATTGTCAGCCGCGCAGGCCATGTGCCGCATGCGAAACGCCC
GCCGAGCCTACCTGGTTGGACGACGCGGGGTCATCCAGTTGCAGGCCCAT
GTTCGGAGCTTTTTGTGCGTTCAAGAATACCGACGCATTACAAATCCGTA
CAATAAGCTCGAAGAGGATGCGCTGCTGCGCCTCATCATTGAGCTGGAGG
CAGATGCGAAGACGGCGGAGGAACGTAAAGCTTTCGACGAGTGTGTGGCT
GTGGCTGAGAAGATGAAGATGGTGGACTGTGCGCTTACATCTGTTCGGGA
GGCGCGTGAGCCTTTGCCGTACACTCGCAAGAGCCTGGAGGAAAAAGTGG
CCGAGGTCGAGAGTGCGATCGAGGATATGTCCCTGCGGAAGAATTTTGTG
GCCTGCTCGAAACTGCAAATAGAACTGCAAAGCCTTATCGAGCTACGAAG
GCTCATGCCCACGCGACAAGAGGTACTGAATGACATTGCTGCACTTCAAA
CCTCTATTGACGAGCATTTCCAGTGCAAAAAATTCAAAGCATGCGACGAG
GTTCAACTCCAGGTTAAAGTGCTGGAACTCAAATTTCGCGATATTTTAAA
TGCGAAGGAACCTTCCGCCGCGGAAGCCACGGGTTTCAGAGGCCGTGGGG
ATCTCGAAGCGGCAGTGAAGGCGGCGGAGGAAGAGCTGATGCATCTGGAG
GCCGCAAAGAATTTTGCAGCATGTCAAAAGGCGCAAGAGGAAGTGAATCG
TTTGTCGGGCATGCGGAAATTGTTTCCTACCTCCGCTGAGAAGGAGCACG
AAATCGAGCATCTGGAAGCGGCGATCTAA

protein sequence of rna6478

>rna6478-protein ID=rna6478-protein|Name=rna6478|organism=Nannochloropsis gaditana|type=polypeptide|length=446bp
MVAPVLVAYEFIGPADAPETGFSSSFELFASDSPTDVLTVLALREAFPYV
GDFHFRAKIPFQETQYAWLDLTEEDTPLPLLTEESDQPVVAIRVLPLAFE
DEDEDRQGKNGGELDFSGPDLDQDIVESCVLGEGGGSRGGGGDALGVGGG
RDASFSSPGGSYGNWAHQLKGVGESVITSDVARDLTKKGLKVGKQVGKQV
NKLWRLVGEGLGGGERGEGGAGDRREGRSLVPEGPSPSSVRYLRRWEDAL
VTPPDAETLLALWKALFPGAASRDEGARARSRQWRRAGCEEEDPLREFRG
TGSMCVRCLTYFARTYPEKTQDILERYEAGKKEGCGNQEMYPLIGVSNSL
ILIMVDIFKLRDARYVHVQSTMWNLFEGGGYGTMEEVFSAALAYLDRRWM
ETEASIEGFSTLARETRRALEGVLGQGPLNLPHFQALAQDAGLGWR

mRNA from alignment at CM002468.1:600509..602353+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6478 ID=rna6478|Name=rna6478|organism=Nannochloropsis gaditana|type=mRNA|length=1845bp|location=Sequence derived from alignment at CM002468.1:600509..602353+ (Nannochloropsis gaditana)
GTAAGCTTCGTGTCTTCCTATTAATCAATTTTTCTTGACAGAATTGGCGC
CCGCTCCAAAATATTGCTACCATTGCGTGCAAAAAACCTTATTTTTTGAA
TTATGTACATCCTGAATTGTGAAGTGGTTGCTGCTTTGCGTGTATTCGCA
GTAGAAAGACTTCTATCATCATCTTGTACACGTCCCCTTTCTTACGCTCC
GCTCGCCTCTTCGAAGACAAAGCACTTTTGACGACAAAACCACCCTTCTC
TTGTCCAGCCCTATCAGAAACATTCGTACGAGGCGGCTCTCTCCGCATCC
GGAGCCTAGGGTGACAAAGCGTCGCGAGTGCAAGTTGGCACTTGTTTATG
ACTGATTGTCGCACGTCCACCTCGAACCGGTTACCCTGTGAAGCTTTTTT
AGACCATGGTGGCCCCTGTCCTTGTCGCCTACGAATTTATCGGGCCCGCG
GATGCACCTGAGACGGGTTTCTCGTCCTCGTTCGAGCTCTTTGCTTCGGA
TTCCCCAACTGACGTGCTTACAGTGCTCGCCCTGCGCGAGGCCTTCCCCT
ACGTGGGTGACTTCCATTTTCGAGCAAAGATTCCTTTCCAAGAGACGCAG
TACGCCTGGCTGGAtctgacggaggaggatacACCCTTGCCTCTCTTGAC
TGAAGAGAGCGATCAGCCAGTCGTGGCGATCCGGGTCCTTCCCCTGGcct
tcgaggacgaggacgaggaccggcaggggaagaatggaggagagCTGGAT
TTCAGTGGGCCAGATTTGGATCAAGATATTGTGGAAAGTTGTGTCctcgg
ggaaggcggcggcagccgtggagggggcggagacgctctgggagtgggag
gggggcgcgaCGCCTCGTTCTCCTCTCCAGGGGGGAGTTATGGCAACTGG
GCCCATCAGCTGAAGGGCGTAGGCGAGTCGGTGATAACCTCGGACGTGGC
CCGGGACCTGACCAAGAAGGGGCTGAAGGTGGGAAAGCAGGTGGGAAAGC
AGGTGAACAAGCTCTGGCGActggtgggcgagggcctCGGGGGTggtgag
aggggggaaggaggggcgggggacagaagggaggggcgctcGTTGGTGCC
TGAAGGCCCGAGCCCGTCGAGCGTCCGCTATTTGCGCAGGTGGGAAGATG
CGTTGGTCACGCCCCCCGACGCAGAGACCCTGCTCGCACTCTGGAAGGCG
CTTTTCCCGGGGGCGGCCTCGCGAGATGAGGGGGCCCGAGCACGGTCCCG
GCAGTGGCGGAGAGCGGGatgcgaggaagaggacccCTTGCGAGAGTTCA
GAGGGACGGGAAGTATGTGTGTACGGTGCCTGACATATTTCGCACGGACG
TACCCGGAGAAGACGCAGGACATCCTAGAACGGTACGAGGctggaaaaaa
ggaggggtgtGGAAATCAGGAGATGTATCCATTAATTGGCGTCTCGAACA
GCCTAATTTTGATTATGGTAGACATCTTTAAGCTGCGGGACGCTCGTTAC
GTACACGTGCAGTCGACGATGTGGAACCTTttcgaagggggggggtatgg
caccatggaggaggtcttTTCTGCGGCCCTGGCATACCTGGATCGCAGGT
GGATGGAAACGGAGGCGTCTATCGAAGGTTTCTCGACTTTAGCCCGTGAG
ACAAGGCGGGCGCTGGAGGGGGTTTTGGGGCAGGGACCGTTGAATCTGCC
GCATTTCCAGGCACTGGCGCAGGACGCGGGGTtggggtggaggtgacgac
ACGTAGGAATTGAGACGAGcgaaaaaatggaaaaataTGTGAATTAAATC
GAGCGGTCTATCTTTAAAGAAATACACAAGGCGCAGCCTCTAGGG

Coding sequence (CDS) from alignment at CM002468.1:600509..602353+

>rna6478 ID=rna6478|Name=rna6478|organism=Nannochloropsis gaditana|type=CDS|length=1341bp|location=Sequence derived from alignment at CM002468.1:600509..602353+ (Nannochloropsis gaditana)
ATGGTGGCCCCTGTCCTTGTCGCCTACGAATTTATCGGGCCCGCGGATGC
ACCTGAGACGGGTTTCTCGTCCTCGTTCGAGCTCTTTGCTTCGGATTCCC
CAACTGACGTGCTTACAGTGCTCGCCCTGCGCGAGGCCTTCCCCTACGTG
GGTGACTTCCATTTTCGAGCAAAGATTCCTTTCCAAGAGACGCAGTACGC
CTGGCTGGAtctgacggaggaggatacACCCTTGCCTCTCTTGACTGAAG
AGAGCGATCAGCCAGTCGTGGCGATCCGGGTCCTTCCCCTGGccttcgag
gacgaggacgaggaccggcaggggaagaatggaggagagCTGGATTTCAG
TGGGCCAGATTTGGATCAAGATATTGTGGAAAGTTGTGTCctcggggaag
gcggcggcagccgtggagggggcggagacgctctgggagtgggagggggg
cgcgaCGCCTCGTTCTCCTCTCCAGGGGGGAGTTATGGCAACTGGGCCCA
TCAGCTGAAGGGCGTAGGCGAGTCGGTGATAACCTCGGACGTGGCCCGGG
ACCTGACCAAGAAGGGGCTGAAGGTGGGAAAGCAGGTGGGAAAGCAGGTG
AACAAGCTCTGGCGActggtgggcgagggcctCGGGGGTggtgagagggg
ggaaggaggggcgggggacagaagggaggggcgctcGTTGGTGCCTGAAG
GCCCGAGCCCGTCGAGCGTCCGCTATTTGCGCAGGTGGGAAGATGCGTTG
GTCACGCCCCCCGACGCAGAGACCCTGCTCGCACTCTGGAAGGCGCTTTT
CCCGGGGGCGGCCTCGCGAGATGAGGGGGCCCGAGCACGGTCCCGGCAGT
GGCGGAGAGCGGGatgcgaggaagaggacccCTTGCGAGAGTTCAGAGGG
ACGGGAAGTATGTGTGTACGGTGCCTGACATATTTCGCACGGACGTACCC
GGAGAAGACGCAGGACATCCTAGAACGGTACGAGGctggaaaaaaggagg
ggtgtGGAAATCAGGAGATGTATCCATTAATTGGCGTCTCGAACAGCCTA
ATTTTGATTATGGTAGACATCTTTAAGCTGCGGGACGCTCGTTACGTACA
CGTGCAGTCGACGATGTGGAACCTTttcgaagggggggggtatggcacca
tggaggaggtcttTTCTGCGGCCCTGGCATACCTGGATCGCAGGTGGATG
GAAACGGAGGCGTCTATCGAAGGTTTCTCGACTTTAGCCCGTGAGACAAG
GCGGGCGCTGGAGGGGGTTTTGGGGCAGGGACCGTTGAATCTGCCGCATT
TCCAGGCACTGGCGCAGGACGCGGGGTtggggtggaggtga

Synonyms

Publications