rna6454, rna6454 (mRNA) Nannochloropsis gaditana

Overview
Namerna6454
Unique Namerna6454
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1263
Alignment locationCM002468.1:539445..541341 +

Link to JBrowse

Properties
Property NameValue
Productrmd5 like protein
Orig transcript idgnl|cribi|Naga_100020g23.5420.mrna
Orig protein idgnl|cribi|Naga_100020g23.5420
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:539445..541341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100020g23gene6236Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6454rna6454-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24287.1cds6438Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6454 ID=rna6454|Name=rna6454|organism=Nannochloropsis gaditana|type=mRNA|length=1263bp
ATGCTCGGAAGCGCGGCGAGTGGAGTAGCGAATGATGCCAAACGGACTTC
AAATCACACGAGCAGCAAGGTCTCGGGGGCTGGAGGCGGGAACCCCTTAG
AGTTAGCCAAAAGACTAGTCCGGGCTGTTGCCCGGGCGTTCTACGCGGAC
GACACGGTGGTGGTGTTAGATGCCTTGCTGCGGGACCGGCATGTCAAGGA
CACGGATATCGACACTCGCTTGGGGGTGGGGGCCAAACAAGCGCGGCGAC
TGCTCACAGAACTTCTAGAGGAGCGTTTGATCAAGACGGAAGACATCGTG
GATGAGCTGACGGGCAAACGGGAACTGTTTTACTACATCGATTTCTCTCA
CTTTACCAATGTTGTGCGATACCGGATTCACCTCATGCAGCGGGAACTGG
AGCGGATGGAACGTGAAGCCAACGACAATCAAACCTACGAGTGTCCGGTG
TGCGGTCGTGCCTTGCCGCTCTTGGAGGTTCAGCCCCTGCGCAACAAGCG
GTACGGCTTCTGTTGCCCCACTTGCTGTTCAAGCGAGCTACATGCCACGT
GTGAAGGCTCCCAGTGGCAGCTAAGGCCGAAAACTGGCGTCACGGGTTTT
GAGGAAGTACAGGCGCTAAAAGAAAAGATGCGTGCACAAATGTATGGCGC
GGCATCGGAGACAAGCGCCGCGCTCCACGACGGCATATATAATCTTCTGT
CAGCGCTGGAGCACAAGCCGCTGCCGAGCAATCTTCCGAGTGAGCTTATC
GCAGTCGGCGTAGGCGGCCTCCCGGCTGGAGGAACAGAGCTTCAACGGCG
GCGACGGGAGGGAGCGGGAGGAGGGACAGGAGGTCATGCAGGAGGGAGCT
CAATAGGTATTTTTGAGGACCTTGCGGCGTCCACTCGAGACGGCGGCATA
CAGGCGGACGAGGAGACCGGCGAGACGACGCCCAGCCTTGTCCGGCCTGC
GCGTGCTCAGCCCTCCTTTCTGCAGGGCAGCCGAGTCATCAAGGAGGTCG
CCGACCCTTTGCAACACGAGACGAGGAAACCGCAGGCCACTGGAAATGAG
GTGGCCGATGGACTTTTCATGCACAAAGTCGAGGAAGAAGCTAAGCACGT
TGACGTGTATCGTCAAGCATATGCCGAAGCCTTCAAACGCGGTGTTGGGG
TCGAAACCATCGAAAAGAGTATTAAAGTAGAGAGAGACGATGGTGGCCTC
GATGGGAGTGAAGGGATCGAGGCGGTGGAGGAGGAGGACGTTGACTGGGA
GGAGGGCGAGTGA
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protein sequence of rna6454

>rna6454-protein ID=rna6454-protein|Name=rna6454|organism=Nannochloropsis gaditana|type=polypeptide|length=419bp
MCDSLLTELTRLREKQRQNTEIMLRLVNSVGAALEDSLGEPTTPQVPHSS
LEDIMPQLVQQHKTYHAALSKMTKSVDRVFLDATPPVFMCRPLRKEDRGL
VDQMVGQHLYRRGRTRTAVKLVQEAGLCSSALNLQAHEALARVHEVIAAA
SKKRDLGPARAWAAEHREGLKHVGSNLEFKLARLQFVKLVAGDGSQGKRA
EEDAKEEEEETPLGCEGEASTHQDDLAISFAREHLAPFAVEGGGNAEEVR
KLMGSLLYAGRLDRSPYKRYLAPRLWADAMEALHTEGCRMLGLPVESSLS
VCYRASLHAMGPLAKMRQVVLNSKGDWEALEELPGGIEWGRDSSLRFHSV
FSCPVTREQASRANPPMVLKCGHVICRNSLNRLLKPQTAGGRASQGQHRF
KCFICPVEQTLQDAQQIYF
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mRNA from alignment at CM002468.1:539445..541341+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6454 ID=rna6454|Name=rna6454|organism=Nannochloropsis gaditana|type=mRNA|length=1897bp|location=Sequence derived from alignment at CM002468.1:539445..541341+ (Nannochloropsis gaditana)
tccagcccccgAGACCTTGCTGCTCGTGTGATTTGAAGTCCGTTTGGCAT
CATTCGCTACTCCACTCGCCGCGCTTCCGAGCATTTCTAAATATTTCTAT
TGTTTCCTAAGTAAGGAAAGACGCCGAGGAGAACTCGAGAAGtagagggg
aggtcgggacGGTCTAACCTGCTGTGCGTGCTTTCATAATCTGCACCGTC
AGCCCTCTGGCAAGCGACTATACGTAATGCAGAGGCCTATTTGTGAGTTG
ACAGGCACCATCTGTGAGACCGAGATATCGAAAGCCATGGTATACCGGGG
CACGCCCCATGGGACAAAAGCTCTCCGTCTCTCCCCATTACTTCCGACCG
TGACAGGGCTGTCTTGTCGCAAAATTTACGGCTGCTCTTTGTCCTTGACT
GCTCCCATACCTTAATTTGCATGAACATAAAAATCTAATACCTTTATTTG
CATCTCTGTTGGCTGCTTTTCCTACATATAGGAAAATTACGCTAGCATTG
CCAGCAGGGCGATCTCGGCACCCTCAATAAAAACGCGCACCTCCTAGAGC
GACTCAGAGCGCGGATTCAGTAATCGTAGCCAGACCACCATGTGTGACAG
CCTACTTACAGAGTTGACGCGCTTGAGAGAGAAGCAGCGTCAGAATACTG
AAATTATGCTGCGGCTGGTGAACAGTGTAGGCGCTGCACTTGAAGACAGC
TTGGGAGAGCCGACGACGCCTCAAGTTCCTCATAGTTCATTGGAAGATAT
CATGCCTCAGCTTGTCCAGCAACATAAGACGTACCATGCCGCCCTATCAA
AGATGACTAAAAGCGTGGACCGCGTGTTCCTAGACGCGACGCCCCCCGTC
TTCATGTGCCGTCCGCTTCGTAAAGAGGACCGGGGTCTCGTCGACCAGAT
GGTGGGTCAGCACCTTTACCGCCGGGGCAGGACGCGCACTGCGGTCAAGT
tggtgcaggaggcgggacTCTGCTCTTCAGCCCTGAATTTGCAGGCCCAT
GAGGCTTTGGCGCGGGTCCACGAGGTGAttgccgccgccagcaagaaaag
ggacTTGGGCCCCGCCCGGGCATGGGCGGCGGAGCACCGAGAGGGTTTGA
AGCATGTGGGGAGTAACTTGGAGTTCAAGCTCGCGCGCTTGCAGTTCGTA
AAGCTGGTAGCAGGGGACGGATCACAAGGTAAAAgggctgaggaggacgc
gaaggaggaggaggaggaaaccccCTTGGGCTGTGAAGGGGAGGCCTCGA
CGCACCAGGACGACTTGGCCATATCCTTTGCACGAGAGCATCTAGCGCCC
TTTgcagtggaggggggagggaacgcAGAGGAGGTGCGGAAACTGATGGG
AAGCTTGCTCTACGCGGGCCGCTTGGACAGGTCCCCCTACAAGCGGTACC
TGGCCCCCAGGCTATGGGCGGACGCCATGGAGGCGCTGCACACGGAGGGC
TGCCGCATGCTGGGCCTGCCGGTCGAGAGCTCGCTCAGCGTCTGCTATCG
TGCCAGCCTGCACGCGATGGGGCCTCTGGCGAAGATGCGACAAGTGGTGC
TGAACAGCAAGGGCGACTGGGAGGCCCTCGAGGAGCTCCCGGGAGGCATC
GAGTGGGGCCGGGACTCCTCTTTGCGATTCCACAgcgtcttctcctgccc
cgTGACGCGGGAGCAAGCCAGTCGCGCAAATCCGCCCATGGTGCTCAAAT
GCGGCCACGTGATATGTCGCAACAGCCTGAATCGGCTTCTGAAGCCGCAG
ACCGCGGGCGGCCGAGCCAGTCAGGGTCAGCACCGGTTCAAGTGCTTCAT
CTGCCCCGTAGAGCAGACCCTACAGGATGCACAGCAGATATATTTTTGAA
GGTAGCACAAAGAAAATGTGTAAATCCAGCCACAGCAACGGAAAGCG
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Coding sequence (CDS) from alignment at CM002468.1:539445..541341+

>rna6454 ID=rna6454|Name=rna6454|organism=Nannochloropsis gaditana|type=CDS|length=1260bp|location=Sequence derived from alignment at CM002468.1:539445..541341+ (Nannochloropsis gaditana)
ATGTGTGACAGCCTACTTACAGAGTTGACGCGCTTGAGAGAGAAGCAGCG
TCAGAATACTGAAATTATGCTGCGGCTGGTGAACAGTGTAGGCGCTGCAC
TTGAAGACAGCTTGGGAGAGCCGACGACGCCTCAAGTTCCTCATAGTTCA
TTGGAAGATATCATGCCTCAGCTTGTCCAGCAACATAAGACGTACCATGC
CGCCCTATCAAAGATGACTAAAAGCGTGGACCGCGTGTTCCTAGACGCGA
CGCCCCCCGTCTTCATGTGCCGTCCGCTTCGTAAAGAGGACCGGGGTCTC
GTCGACCAGATGGTGGGTCAGCACCTTTACCGCCGGGGCAGGACGCGCAC
TGCGGTCAAGTtggtgcaggaggcgggacTCTGCTCTTCAGCCCTGAATT
TGCAGGCCCATGAGGCTTTGGCGCGGGTCCACGAGGTGAttgccgccgcc
agcaagaaaagggacTTGGGCCCCGCCCGGGCATGGGCGGCGGAGCACCG
AGAGGGTTTGAAGCATGTGGGGAGTAACTTGGAGTTCAAGCTCGCGCGCT
TGCAGTTCGTAAAGCTGGTAGCAGGGGACGGATCACAAGGTAAAAgggct
gaggaggacgcgaaggaggaggaggaggaaaccccCTTGGGCTGTGAAGG
GGAGGCCTCGACGCACCAGGACGACTTGGCCATATCCTTTGCACGAGAGC
ATCTAGCGCCCTTTgcagtggaggggggagggaacgcAGAGGAGGTGCGG
AAACTGATGGGAAGCTTGCTCTACGCGGGCCGCTTGGACAGGTCCCCCTA
CAAGCGGTACCTGGCCCCCAGGCTATGGGCGGACGCCATGGAGGCGCTGC
ACACGGAGGGCTGCCGCATGCTGGGCCTGCCGGTCGAGAGCTCGCTCAGC
GTCTGCTATCGTGCCAGCCTGCACGCGATGGGGCCTCTGGCGAAGATGCG
ACAAGTGGTGCTGAACAGCAAGGGCGACTGGGAGGCCCTCGAGGAGCTCC
CGGGAGGCATCGAGTGGGGCCGGGACTCCTCTTTGCGATTCCACAgcgtc
ttctcctgccccgTGACGCGGGAGCAAGCCAGTCGCGCAAATCCGCCCAT
GGTGCTCAAATGCGGCCACGTGATATGTCGCAACAGCCTGAATCGGCTTC
TGAAGCCGCAGACCGCGGGCGGCCGAGCCAGTCAGGGTCAGCACCGGTTC
AAGTGCTTCATCTGCCCCGTAGAGCAGACCCTACAGGATGCACAGCAGAT
ATATTTTTGA
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Synonyms
Publications