EWM24227.1, cds6410 (CDS) Nannochloropsis gaditana

Overview
NameEWM24227.1
Unique Namecds6410
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:487384..487540 +
Alignment locationCM002468.1:487835..488973 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24227.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100020g52.5360.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:487384..487540 +
CM002468.1supercontigCM002468.1:487835..488973 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24227.1 vs. NCBI_GenBank
Match: gi|585105618|gb|EWM24227.1| (hypothetical protein Naga_100020g52 [Nannochloropsis gaditana])

HSP 1 Score: 883.248 bits (2281), Expect = 0.000e+0
Identity = 431/431 (100.00%), Postives = 431/431 (100.00%), Query Frame = 0
Query:    1 MLLHIGKVGRKVAVYFLLAFAFAGEPTQAFLPVLRASSPLLPHSLSVVRHVPDLGLTKDSSSSSKSSCRPVSLSSVNSASPSGGSNEVAEDGVSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCCPEPEFTDEQRVLMTEGRGEREIIASGLLGRGAPGSKATLGGGSGGSSLLKDKDVPQLLNPQAPPAFFTLDAVLRSAEQYVDEFARFDFIRKFLDGHDEAWAEANIIMAIILGYKFDEWGNINLEDVHERFRELAFPPDFRGNEEMRAMLDAILREDEDEEKMKGLEEFLEVMVGKAYYHQSDKGDNEDFACRATLIKWIYEYDFVNDWPRLPTVQALLEVKARIDAKQEENKPPQRFLY 431
            MLLHIGKVGRKVAVYFLLAFAFAGEPTQAFLPVLRASSPLLPHSLSVVRHVPDLGLTKDSSSSSKSSCRPVSLSSVNSASPSGGSNEVAEDGVSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCCPEPEFTDEQRVLMTEGRGEREIIASGLLGRGAPGSKATLGGGSGGSSLLKDKDVPQLLNPQAPPAFFTLDAVLRSAEQYVDEFARFDFIRKFLDGHDEAWAEANIIMAIILGYKFDEWGNINLEDVHERFRELAFPPDFRGNEEMRAMLDAILREDEDEEKMKGLEEFLEVMVGKAYYHQSDKGDNEDFACRATLIKWIYEYDFVNDWPRLPTVQALLEVKARIDAKQEENKPPQRFLY
Sbjct:    1 MLLHIGKVGRKVAVYFLLAFAFAGEPTQAFLPVLRASSPLLPHSLSVVRHVPDLGLTKDSSSSSKSSCRPVSLSSVNSASPSGGSNEVAEDGVSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCCPEPEFTDEQRVLMTEGRGEREIIASGLLGRGAPGSKATLGGGSGGSSLLKDKDVPQLLNPQAPPAFFTLDAVLRSAEQYVDEFARFDFIRKFLDGHDEAWAEANIIMAIILGYKFDEWGNINLEDVHERFRELAFPPDFRGNEEMRAMLDAILREDEDEEKMKGLEEFLEVMVGKAYYHQSDKGDNEDFACRATLIKWIYEYDFVNDWPRLPTVQALLEVKARIDAKQEENKPPQRFLY 431          
BLAST of EWM24227.1 vs. NCBI_GenBank
Match: gi|299469775|emb|CBN76629.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 101.293 bits (251), Expect = 6.014e-20
Identity = 89/326 (27.30%), Postives = 137/326 (42.02%), Query Frame = 0
Query:   86 NEVAEDGVSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCCPEPEFTDEQRVLMTEGRGEREIIASGLLGRGAPGSKATLGGGSGGSSLLKDKDVPQLLNPQAPPAF-FTLDAVLRSAEQYVDEFARFDFIRKFLDGHDEAWAEANIIMAIILGYKFDEW-----GNINLEDVHERFRELAFPPDFRGNEEMRAMLDAILREDEDEEKMKGLEEFLEVMVG--KAYYHQSDKGDNED----FACRATLIKWIYEYDFVND 399
             +  + GV L   +     AAFL   + E L++EWI QDCH+ + +  A+ Y+ A ++G  D+  ++L +G+ +E  DMGDAFV AW +AN VSD L+ +MG E                                             SG S+       P+ L      AF  T D   +       +FAR+ F+   ++G+ + W +AN IMA+  GY  +       G   +          A PPD    E +   L A     +D + + GLE  +E + G      HQ D  +       +  R+TL KW+Y   F++D
Sbjct:   97 QQSVDGGVMLPPAEKADEYAAFLSESIREHLNDEWIEQDCHKGIGEEVARLYLAAFEKGDTDMTTLVLDMGSAMEQFDMGDAFVGAWDIANLVSDFLMEKMGAET--------------------------------------------SGCSA-----KAPKTLPSAGSDAFCLTSDKAEQMQADLTSDFARYRFLLDLMEGNTD-WEQANTIMAVYQGYPVEGEEEEESGRPGVRRGWSASFPGATPPDLSSAEGLVEALQAD--FPDDPDLLDGLEVIVETVYGGEAKRLHQGDPDNGVPPEPLYLRRSTLCKWLYLVGFLSD 370          
BLAST of EWM24227.1 vs. NCBI_GenBank
Match: gi|499368671|ref|WP_011056249.1| (hypothetical protein [Thermosynechococcus elongatus] >gi|22297937|ref|NP_681184.1| hypothetical protein tll0394 [Thermosynechococcus elongatus BP-1] >gi|22294115|dbj|BAC07946.1| tll0394 [Thermosynechococcus elongatus BP-1])

HSP 1 Score: 85.8853 bits (211), Expect = 6.689e-17
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 0
Query:   93 VSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCC 192
            + L    D  A+A +LE  ++ WL+ E++P+  +  +A+ AA+ Y + R EG  DLGG+LL + TEL++ D   +F   + VAN VSDLLL R+G E CC
Sbjct:    8 IQLPPCGDYTAEAEWLEAALLNWLNTEYLPEAVNLAIAQRAAQVYRRQRLEGEHDLGGILLALVTELQEFDFSQSFYSEFAVANAVSDLLLRRLGIEPCC 107          
BLAST of EWM24227.1 vs. NCBI_GenBank
Match: gi|571030658|ref|WP_024125455.1| (hypothetical protein [Thermosynechococcus sp. NK55a] >gi|564738672|gb|AHB89070.1| hypothetical protein NK55_09030 [Thermosynechococcus sp. NK55a])

HSP 1 Score: 84.7297 bits (208), Expect = 1.958e-16
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 0
Query:   93 VSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCC 192
            + L    D  A+A +LE  ++ WL+ E++P+  +  +A+ AA+ Y + R EG  DLGG+LL + TEL++ D   +F   + VAN VSDLLL R+G E CC
Sbjct:    8 IQLPPCGDCTAEAEWLEAALLNWLNTEYLPEAVNLVIAQRAAQVYRRQRLEGEHDLGGILLALVTELQEFDFSQSFYSEFAVANAVSDLLLRRLGIEPCC 107          
BLAST of EWM24227.1 vs. NCBI_GenBank
Match: gi|504937419|ref|WP_015124521.1| (hypothetical protein [Synechococcus sp. PCC 6312] >gi|427377026|gb|AFY60978.1| hypothetical protein Syn6312_1834 [Synechococcus sp. PCC 6312])

HSP 1 Score: 82.4185 bits (202), Expect = 1.452e-15
Identity = 39/101 (38.61%), Postives = 63/101 (62.38%), Query Frame = 0
Query:   92 GVSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCC 192
             V+L    DL A+ A+L+T +  WLD E++P+  +Q +A  AA+ Y + R EG  DLG +++ + TE++  D   +F   + +AN VSDLL+ R+G + CC
Sbjct:    7 AVTLPPSPDLEAEVAWLQTALGAWLDQEYLPELVNQAIAARAAQVYFRQRMEGEHDLGSIVIAIVTEMQMFDFSRSFYSEFAIANAVSDLLMQRLGIDTCC 107          
BLAST of EWM24227.1 vs. NCBI_GenBank
Match: gi|752565879|ref|WP_041237108.1| (hypothetical protein [Cyanothece sp. PCC 7425])

HSP 1 Score: 82.4185 bits (202), Expect = 1.541e-15
Identity = 38/100 (38.00%), Postives = 64/100 (64.00%), Query Frame = 0
Query:   93 VSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCC 192
            ++L   ++  ++A +L T +  WLD E+IP+  +QE+A+ A + Y++ R EG  DLG +++ + TELE  D   +F  ++ +AN VSDLLL  +G + CC
Sbjct:    8 ITLPPCRNPDSEAHWLRTTLQTWLDQEFIPESINQEIAQRATQVYLRQRLEGENDLGALVIALVTELEQFDFSRSFYSSFAIANAVSDLLLQSLGIDTCC 107          
BLAST of EWM24227.1 vs. NCBI_GenBank
Match: gi|219865296|gb|ACL45635.1| (conserved hypothetical protein [Cyanothece sp. PCC 7425])

HSP 1 Score: 82.0333 bits (201), Expect = 2.288e-15
Identity = 38/100 (38.00%), Postives = 64/100 (64.00%), Query Frame = 0
Query:   93 VSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCC 192
            ++L   ++  ++A +L T +  WLD E+IP+  +QE+A+ A + Y++ R EG  DLG +++ + TELE  D   +F  ++ +AN VSDLLL  +G + CC
Sbjct:   12 ITLPPCRNPDSEAHWLRTTLQTWLDQEFIPESINQEIAQRATQVYLRQRLEGENDLGALVIALVTELEQFDFSRSFYSSFAIANAVSDLLLQSLGIDTCC 111          
BLAST of EWM24227.1 vs. NCBI_GenBank
Match: gi|1049316974|gb|OCQ95191.1| (hypothetical protein BCR12_07345 [Limnothrix sp. P13C2])

HSP 1 Score: 81.6481 bits (200), Expect = 3.393e-15
Identity = 39/100 (39.00%), Postives = 63/100 (63.00%), Query Frame = 0
Query:   93 VSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCC 192
            V L  ++DL  +  +LE  +   LD+E+IP+  + ++A+VAA AY++ R EG  D+ G+ + + TE++  D   +F   + +AN VS+LLL RMG E CC
Sbjct:    8 VILAPVEDLDRERQWLEQSLANLLDSEYIPEAVNSQIARVAANAYIRQRMEGEDDIDGIAIAILTEMQGFDFSKSFFSEFAIANAVSELLLDRMGIEPCC 107          
BLAST of EWM24227.1 vs. NCBI_GenBank
Match: gi|1124126962|gb|OKY72314.1| (hypothetical protein BJG00_06825 [Limnothrix sp. CACIAM 69d])

HSP 1 Score: 80.4925 bits (197), Expect = 7.477e-15
Identity = 38/100 (38.00%), Postives = 63/100 (63.00%), Query Frame = 0
Query:   93 VSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCC 192
            V L  ++DL  +  +LE  +   LD+E+IP+  ++++A+VA  AY++ R EG  D+ G+ + + TE++  D   +F   + +AN VS+LLL RMG E CC
Sbjct:    8 VILAPVEDLDRERQWLEQSLANLLDSEYIPEAVNRQIARVATNAYIRQRMEGEDDIDGIAIAILTEMQGFDFSKSFFSEFAIANAVSELLLDRMGIEPCC 107          
BLAST of EWM24227.1 vs. NCBI_GenBank
Match: gi|1180100260|ref|WP_083619988.1| (hypothetical protein [Planktothrix serta] >gi|1108766238|emb|CUR14330.1| conserved hypothetical protein [Planktothrix serta PCC 8927])

HSP 1 Score: 79.7221 bits (195), Expect = 1.668e-14
Identity = 37/107 (34.58%), Postives = 65/107 (60.75%), Query Frame = 0
Query:   92 GVSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCCPEPEFT 198
             ++L   Q+L  +  +L+  +  WLD ++IP+  ++ +A+ AA+ Y++ R EG  D+G +++ + TE+E  D   +F   + +AN VSDLLL  +G E CC   +FT
Sbjct:    7 AITLPPSQNLEQEGEWLKQTLHTWLDEQFIPEAVNETIAQRAAQIYIRQRLEGENDVGSLVIAIVTEMESFDFSKSFFGGFAIANAVSDLLLDSLGIERCCGREKFT 113          
The following BLAST results are available for this feature:
BLAST of EWM24227.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105618|gb|EWM24227.1|0.000e+0100.00hypothetical protein Naga_100020g52 [Nannochlorops... [more]
gi|299469775|emb|CBN76629.1|6.014e-2027.30conserved unknown protein [Ectocarpus siliculosus][more]
gi|499368671|ref|WP_011056249.1|6.689e-1742.00hypothetical protein [Thermosynechococcus elongatu... [more]
gi|571030658|ref|WP_024125455.1|1.958e-1642.00hypothetical protein [Thermosynechococcus sp. NK55... [more]
gi|504937419|ref|WP_015124521.1|1.452e-1538.61hypothetical protein [Synechococcus sp. PCC 6312] ... [more]
gi|752565879|ref|WP_041237108.1|1.541e-1538.00hypothetical protein [Cyanothece sp. PCC 7425][more]
gi|219865296|gb|ACL45635.1|2.288e-1538.00conserved hypothetical protein [Cyanothece sp. PCC... [more]
gi|1049316974|gb|OCQ95191.1|3.393e-1539.00hypothetical protein BCR12_07345 [Limnothrix sp. P... [more]
gi|1124126962|gb|OKY72314.1|7.477e-1538.00hypothetical protein BJG00_06825 [Limnothrix sp. C... [more]
gi|1180100260|ref|WP_083619988.1|1.668e-1434.58hypothetical protein [Planktothrix serta] >gi|1108... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6426rna6426Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications