EWM24227.1, cds6410 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM24227.1 vs. NCBI_GenBank
Match: gi|585105618|gb|EWM24227.1| (hypothetical protein Naga_100020g52 [Nannochloropsis gaditana]) HSP 1 Score: 883.248 bits (2281), Expect = 0.000e+0 Identity = 431/431 (100.00%), Postives = 431/431 (100.00%), Query Frame = 0
Query: 1 MLLHIGKVGRKVAVYFLLAFAFAGEPTQAFLPVLRASSPLLPHSLSVVRHVPDLGLTKDSSSSSKSSCRPVSLSSVNSASPSGGSNEVAEDGVSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCCPEPEFTDEQRVLMTEGRGEREIIASGLLGRGAPGSKATLGGGSGGSSLLKDKDVPQLLNPQAPPAFFTLDAVLRSAEQYVDEFARFDFIRKFLDGHDEAWAEANIIMAIILGYKFDEWGNINLEDVHERFRELAFPPDFRGNEEMRAMLDAILREDEDEEKMKGLEEFLEVMVGKAYYHQSDKGDNEDFACRATLIKWIYEYDFVNDWPRLPTVQALLEVKARIDAKQEENKPPQRFLY 431
MLLHIGKVGRKVAVYFLLAFAFAGEPTQAFLPVLRASSPLLPHSLSVVRHVPDLGLTKDSSSSSKSSCRPVSLSSVNSASPSGGSNEVAEDGVSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCCPEPEFTDEQRVLMTEGRGEREIIASGLLGRGAPGSKATLGGGSGGSSLLKDKDVPQLLNPQAPPAFFTLDAVLRSAEQYVDEFARFDFIRKFLDGHDEAWAEANIIMAIILGYKFDEWGNINLEDVHERFRELAFPPDFRGNEEMRAMLDAILREDEDEEKMKGLEEFLEVMVGKAYYHQSDKGDNEDFACRATLIKWIYEYDFVNDWPRLPTVQALLEVKARIDAKQEENKPPQRFLY
Sbjct: 1 MLLHIGKVGRKVAVYFLLAFAFAGEPTQAFLPVLRASSPLLPHSLSVVRHVPDLGLTKDSSSSSKSSCRPVSLSSVNSASPSGGSNEVAEDGVSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCCPEPEFTDEQRVLMTEGRGEREIIASGLLGRGAPGSKATLGGGSGGSSLLKDKDVPQLLNPQAPPAFFTLDAVLRSAEQYVDEFARFDFIRKFLDGHDEAWAEANIIMAIILGYKFDEWGNINLEDVHERFRELAFPPDFRGNEEMRAMLDAILREDEDEEKMKGLEEFLEVMVGKAYYHQSDKGDNEDFACRATLIKWIYEYDFVNDWPRLPTVQALLEVKARIDAKQEENKPPQRFLY 431
BLAST of EWM24227.1 vs. NCBI_GenBank
Match: gi|299469775|emb|CBN76629.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 101.293 bits (251), Expect = 6.014e-20 Identity = 89/326 (27.30%), Postives = 137/326 (42.02%), Query Frame = 0
Query: 86 NEVAEDGVSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCCPEPEFTDEQRVLMTEGRGEREIIASGLLGRGAPGSKATLGGGSGGSSLLKDKDVPQLLNPQAPPAF-FTLDAVLRSAEQYVDEFARFDFIRKFLDGHDEAWAEANIIMAIILGYKFDEW-----GNINLEDVHERFRELAFPPDFRGNEEMRAMLDAILREDEDEEKMKGLEEFLEVMVG--KAYYHQSDKGDNED----FACRATLIKWIYEYDFVND 399
+ + GV L + AAFL + E L++EWI QDCH+ + + A+ Y+ A ++G D+ ++L +G+ +E DMGDAFV AW +AN VSD L+ +MG E SG S+ P+ L AF T D + +FAR+ F+ ++G+ + W +AN IMA+ GY + G + A PPD E + L A +D + + GLE +E + G HQ D + + R+TL KW+Y F++D
Sbjct: 97 QQSVDGGVMLPPAEKADEYAAFLSESIREHLNDEWIEQDCHKGIGEEVARLYLAAFEKGDTDMTTLVLDMGSAMEQFDMGDAFVGAWDIANLVSDFLMEKMGAET--------------------------------------------SGCSA-----KAPKTLPSAGSDAFCLTSDKAEQMQADLTSDFARYRFLLDLMEGNTD-WEQANTIMAVYQGYPVEGEEEEESGRPGVRRGWSASFPGATPPDLSSAEGLVEALQAD--FPDDPDLLDGLEVIVETVYGGEAKRLHQGDPDNGVPPEPLYLRRSTLCKWLYLVGFLSD 370
BLAST of EWM24227.1 vs. NCBI_GenBank
Match: gi|499368671|ref|WP_011056249.1| (hypothetical protein [Thermosynechococcus elongatus] >gi|22297937|ref|NP_681184.1| hypothetical protein tll0394 [Thermosynechococcus elongatus BP-1] >gi|22294115|dbj|BAC07946.1| tll0394 [Thermosynechococcus elongatus BP-1]) HSP 1 Score: 85.8853 bits (211), Expect = 6.689e-17 Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 0
Query: 93 VSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCC 192
+ L D A+A +LE ++ WL+ E++P+ + +A+ AA+ Y + R EG DLGG+LL + TEL++ D +F + VAN VSDLLL R+G E CC
Sbjct: 8 IQLPPCGDYTAEAEWLEAALLNWLNTEYLPEAVNLAIAQRAAQVYRRQRLEGEHDLGGILLALVTELQEFDFSQSFYSEFAVANAVSDLLLRRLGIEPCC 107
BLAST of EWM24227.1 vs. NCBI_GenBank
Match: gi|571030658|ref|WP_024125455.1| (hypothetical protein [Thermosynechococcus sp. NK55a] >gi|564738672|gb|AHB89070.1| hypothetical protein NK55_09030 [Thermosynechococcus sp. NK55a]) HSP 1 Score: 84.7297 bits (208), Expect = 1.958e-16 Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 0
Query: 93 VSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCC 192
+ L D A+A +LE ++ WL+ E++P+ + +A+ AA+ Y + R EG DLGG+LL + TEL++ D +F + VAN VSDLLL R+G E CC
Sbjct: 8 IQLPPCGDCTAEAEWLEAALLNWLNTEYLPEAVNLVIAQRAAQVYRRQRLEGEHDLGGILLALVTELQEFDFSQSFYSEFAVANAVSDLLLRRLGIEPCC 107
BLAST of EWM24227.1 vs. NCBI_GenBank
Match: gi|504937419|ref|WP_015124521.1| (hypothetical protein [Synechococcus sp. PCC 6312] >gi|427377026|gb|AFY60978.1| hypothetical protein Syn6312_1834 [Synechococcus sp. PCC 6312]) HSP 1 Score: 82.4185 bits (202), Expect = 1.452e-15 Identity = 39/101 (38.61%), Postives = 63/101 (62.38%), Query Frame = 0
Query: 92 GVSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCC 192
V+L DL A+ A+L+T + WLD E++P+ +Q +A AA+ Y + R EG DLG +++ + TE++ D +F + +AN VSDLL+ R+G + CC
Sbjct: 7 AVTLPPSPDLEAEVAWLQTALGAWLDQEYLPELVNQAIAARAAQVYFRQRMEGEHDLGSIVIAIVTEMQMFDFSRSFYSEFAIANAVSDLLMQRLGIDTCC 107
BLAST of EWM24227.1 vs. NCBI_GenBank
Match: gi|752565879|ref|WP_041237108.1| (hypothetical protein [Cyanothece sp. PCC 7425]) HSP 1 Score: 82.4185 bits (202), Expect = 1.541e-15 Identity = 38/100 (38.00%), Postives = 64/100 (64.00%), Query Frame = 0
Query: 93 VSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCC 192
++L ++ ++A +L T + WLD E+IP+ +QE+A+ A + Y++ R EG DLG +++ + TELE D +F ++ +AN VSDLLL +G + CC
Sbjct: 8 ITLPPCRNPDSEAHWLRTTLQTWLDQEFIPESINQEIAQRATQVYLRQRLEGENDLGALVIALVTELEQFDFSRSFYSSFAIANAVSDLLLQSLGIDTCC 107
BLAST of EWM24227.1 vs. NCBI_GenBank
Match: gi|219865296|gb|ACL45635.1| (conserved hypothetical protein [Cyanothece sp. PCC 7425]) HSP 1 Score: 82.0333 bits (201), Expect = 2.288e-15 Identity = 38/100 (38.00%), Postives = 64/100 (64.00%), Query Frame = 0
Query: 93 VSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCC 192
++L ++ ++A +L T + WLD E+IP+ +QE+A+ A + Y++ R EG DLG +++ + TELE D +F ++ +AN VSDLLL +G + CC
Sbjct: 12 ITLPPCRNPDSEAHWLRTTLQTWLDQEFIPESINQEIAQRATQVYLRQRLEGENDLGALVIALVTELEQFDFSRSFYSSFAIANAVSDLLLQSLGIDTCC 111
BLAST of EWM24227.1 vs. NCBI_GenBank
Match: gi|1049316974|gb|OCQ95191.1| (hypothetical protein BCR12_07345 [Limnothrix sp. P13C2]) HSP 1 Score: 81.6481 bits (200), Expect = 3.393e-15 Identity = 39/100 (39.00%), Postives = 63/100 (63.00%), Query Frame = 0
Query: 93 VSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCC 192
V L ++DL + +LE + LD+E+IP+ + ++A+VAA AY++ R EG D+ G+ + + TE++ D +F + +AN VS+LLL RMG E CC
Sbjct: 8 VILAPVEDLDRERQWLEQSLANLLDSEYIPEAVNSQIARVAANAYIRQRMEGEDDIDGIAIAILTEMQGFDFSKSFFSEFAIANAVSELLLDRMGIEPCC 107
BLAST of EWM24227.1 vs. NCBI_GenBank
Match: gi|1124126962|gb|OKY72314.1| (hypothetical protein BJG00_06825 [Limnothrix sp. CACIAM 69d]) HSP 1 Score: 80.4925 bits (197), Expect = 7.477e-15 Identity = 38/100 (38.00%), Postives = 63/100 (63.00%), Query Frame = 0
Query: 93 VSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCC 192
V L ++DL + +LE + LD+E+IP+ ++++A+VA AY++ R EG D+ G+ + + TE++ D +F + +AN VS+LLL RMG E CC
Sbjct: 8 VILAPVEDLDRERQWLEQSLANLLDSEYIPEAVNRQIARVATNAYIRQRMEGEDDIDGIAIAILTEMQGFDFSKSFFSEFAIANAVSELLLDRMGIEPCC 107
BLAST of EWM24227.1 vs. NCBI_GenBank
Match: gi|1180100260|ref|WP_083619988.1| (hypothetical protein [Planktothrix serta] >gi|1108766238|emb|CUR14330.1| conserved hypothetical protein [Planktothrix serta PCC 8927]) HSP 1 Score: 79.7221 bits (195), Expect = 1.668e-14 Identity = 37/107 (34.58%), Postives = 65/107 (60.75%), Query Frame = 0
Query: 92 GVSLKDLQDLGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGGVLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCCPEPEFT 198
++L Q+L + +L+ + WLD ++IP+ ++ +A+ AA+ Y++ R EG D+G +++ + TE+E D +F + +AN VSDLLL +G E CC +FT
Sbjct: 7 AITLPPSQNLEQEGEWLKQTLHTWLDEQFIPEAVNETIAQRAAQIYIRQRLEGENDVGSLVIAIVTEMESFDFSKSFFGGFAIANAVSDLLLDSLGIERCCGREKFT 113 The following BLAST results are available for this feature:
BLAST of EWM24227.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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