rna6426, rna6426 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6426
Unique Name	rna6426
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3540
Alignment location	CM002468.1:487384..488973 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100020g52.5360.mrna
Orig protein id	gnl\|cribi\|Naga_100020g52.5360
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:487384..488973 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g52	gene6209	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6426	rna6426-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24227.1	cds6410	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:487384..488973+
coding sequence from alignment at CM002468.1:487384..488973+

mRNA sequence

>rna6426 ID=rna6426|Name=rna6426|organism=Nannochloropsis gaditana|type=mRNA|length=3540bp
TGTCTCTGTCTTCCCGTTTAGTGTCGTACTCTTCTCATGGAGTATTCCCC
ACCGATCTTCCAATTGATGCGCAGCATTCGCCCCGCGACGACCATCTTCT
TAGGCACGCAGTGTGATGCACAGCACAATGGAGCCAATGGCAAATAAGCA
TGTCTTCGCGTCTTATATTCCTTTGTGTGACTTCTTTTTAACCATACAGG
TCCGCCTTAAATAACGTCACCGTTCGAAAATGGGTCTCAAGTCTCGCCGG
CCACCAAAGAAGGGGACTGCGGCTGCTGCAGCCGCTACTAAAAAAAAAAT
GGAGGAAGATACCAAGACAGAAGCGACCTCGGAGGCGTCTGCCTCGACGT
TGAGCCTCGAGAACCTGCGGATGGATGACGGGCCCTCGGCAGTGGAAAAG
CTGTCGGCTGACGGGATCATCGCGACGTACTCAAGCACAAGCAAGGAAAT
GCACCGCAACACGAAAGACATCAACGTACAAAATGTGACGGTCCAATTCA
TGGGCAAAATTCTCTTGGATGACAGTGAGATAGTGCTGAACCATGGAAAC
CGCTATGGCTTTTTGGGCATGAATGGTTCAGGCAAATCTACCATCATGCG
GGTACTCGGGGCACGCGCCGTACCTATCCCAGATGGCATCGACATGTTTC
ATCTTACACACGAGATAGAGGCGAGTGACCTAACGGCCCTCGAGGCTGTG
ATGTCTGTCGATGAGGAACGCGCCAAGCTGGAGAGGGAAGCAGACCTGCT
GAACAACATCATGACGGAGGACGGTGCGGAGGCTCGAGATGACTATGATG
ACATCGTGGACCGGTTGCAACAGGTCTACGAACGCTTGGAAGAGATGGAT
GCCTCCACGGCAGAGGTCCGCGCTTGCTCCATTCTCTCAGGTCTGGGTTT
TACGAAGGCCACTATGAAGAAGAAGACGCGTGAATTCTCCGGTGGTTGGC
GTATGCGCATCGCCTTGGCCCGGGCACTCTTCTTGTCGCCCGAACTATTG
CTCTTAGATGAACCAACAAATCATTTGGACATGGAGGCGGTTGTGTGGCT
CGAGGACTACCTTTCAGCCTGGAAGAAGATTTTGTTCTTGGTCTCGCACT
CGCAGGACTTTTTGAACAATGTTTGCACTCATATTGTCCACCTGTCGGAC
AAAAAACTGAAGTACTACACCGGGAATTATGATTCCTTTGTTCAGACGCG
CGCTGAATTGGAAGAAGAGCAGATGAAGCGTTACCACTGGGAACAAGACC
AAATTAAACAGATGAAGGAGTACATTGCCAAGTTTGGCCACGGCAGCGCC
AAGCTTGCACGTCAGGCTCAGAGCAAGGAGAAGACACTAGCTAAAATGGT
ACGAGGTGGCCTCACGGACAAAGTAGTGAGAGAAGCGAGCTTCAACTTTC
GCTTTCCTGATCCGGGCTCGCTTCCTCCCCCTGTGCTGCAGCTGGTGAAC
ATCACATTTGGTTACCCTGGTTGCGAGGTGCTTTATCGGAATGTAGACTA
TGGAGTCGACCTGGACTCTCGGGTAGCTCTTGTAGGACCCAATGGTGCTG
GCAAATCGACTTTGCTGAAGCTTATGTGCGGCCTGCTTGTACCAACCGTC
GGGGACGTGCGTCCACACTCGCATCTGCGAATTTCGACCTTCACTCAGCA
CTTTGTTGACGTGCTTGATCTGACCAAAACTCCCCTTGACTTCATGTGCG
ACACGTACAAGGAAGCGAGTAGGGAGGAACTTCGGAAATTTCTCGGCCGA
TACGGAGTCTCGGGTGAGGTCCAGACTCAGGTCATGGCAAATTTGTCGGA
TGGGCAGCGTACGCGTGTCGTCTTCGCAAAGATGGCTAAAGACGCACCAC
ATTTGTTGCTTTTAGATGAACCCACCAATCATTTGGATATGGAGTCCATC
GACTCTTTGGCAGATGCTATCAACCATTTTGCAGGTGGAGTTGTCTTAGT
TTCGCACGATATGCGCCTAATATCTCAGGTCGCGAAGGAAATTTGGATGT
GCGACAACAAAACAATTTCCAGATATGAAGGGGACATAGGTGATTTTAAA
ATGATATTGCGAAAGCAAATGCATTTGAAAGGTGAACAGAAAAAGATTGG
TATGGCAGATAAGTCCACCAGAGCCTCGAATGCTGGCGGTGTAGACAATT
AAATTGACGGATAAGTCGCATTACGTCTAATAAAATTCAGGACGTATTCA
AAAATCGGGAACAAATCTTCAATGCGTACGTGTAATGGTTGCAGTGGAGT
AACATCGTAAATATACGAATGTGAGAAAAACTAAAACGAAGGTAGAAGAG
ACGTATTGCTGTCTTATACAGTTAAAGTTAAGAACGGGCCATCGTTTAAA
CTTAGTTGAGAGGAACTGATACTAGAAAGTCAGTCCTAGGGATGATGGCG
CAAATTTGAAAGAGCAGAAAAGTTTCAATGCTTGTGAAGCGTTCCACCAC
ATCAAAGCTGTGAAGATTGTGGGAGAATGCTATACAGAAGATTCAACTCT
TTCGATGACACCGATTGGAGACTTCATAACATTTGGCACCACAAATGAAA
GTCATTGGTGTTGTGAGAAACATTAATTTGATATGAGAAAGGGCACTCAT
GATAAGGTCCATTTAAACTGCGTGAGCTGTGCCGAGCTATAAGCGCCCCA
AAATGGCAGCCAAACATATACAGAGTAGGCCCTGCCTCTCCGGGTGGCAA
ACACCTACCCCTTTTCGACCTTTCTGCAAGACATCGAGGAGATCAAGCGC
GCACCAAAAGTTTCACACACTTTGATTAATATTTTCTATTTATCTCGGCT
TTATGAACTCGACGAGAAATCTTTTCTGTAGACGATTAATATATCGTCTT
CATCCATTTAAAAAGACTTTTCTGGCATTCACCTATAATATCTCCCCGGC
TGAAACGATGCGTTTCCATGGAGTTATCAATGTTTTTAATTGCGAAAAGT
CTGATGGAGCATTACATCTCAAATAACTTATCCAGCTTAAGTCTTATGCC
GTGAAGGATAAAATAAAGGTGCCCTTTAGTACATGTGAACAAGAGTAATC
TGTCTCCTAGACTTGATGATATTTTAATTGTATGATTTGATGGACAGAAA
CTTAAAAAGATCACTGGAAAGTAAAAAGCATCACTTTTCTAGCTGATTAA
GAATATTTATTATTGCAGATGTTGATAATCAGGACAGACCCTGGAGCTAT
TCAAATCATTGTCATACATCTTGCAAAATGGCTCGAGCTTTCGTCACTAG
CTTGCGTACTATCACCGACATAAAGTTTGGCCTTCGAATGACCTTTACAC
CACATGGCAAGGGCATGTCAACGATATACGAAGCGCACGAGTCGTTGAAG
TGTAATAAAAATAAGTTCGATGAATCCATGCCGAAGAGTACTTAGATTGC
ATGTCTTGGAATATTTGTTATACACGTAATTATACTTTACATCCTTTCTA
AACAACAAACGTCCTATTTATCCTTTATGTTCATGGTGTGTACAGAGCAT
ATACTCTACACTTGCAAGATTCACGAAAACCATAGAATTT

protein sequence of rna6426

>rna6426-protein ID=rna6426-protein|Name=rna6426|organism=Nannochloropsis gaditana|type=polypeptide|length=431bp
MLLHIGKVGRKVAVYFLLAFAFAGEPTQAFLPVLRASSPLLPHSLSVVRH
VPDLGLTKDSSSSSKSSCRPVSLSSVNSASPSGGSNEVAEDGVSLKDLQD
LGADAAFLETQVVEWLDNEWIPQDCHQEVAKVAAKAYVKARDEGIADLGG
VLLHVGTELEDMDMGDAFVDAWMVANKVSDLLLMRMGREVCCPEPEFTDE
QRVLMTEGRGEREIIASGLLGRGAPGSKATLGGGSGGSSLLKDKDVPQLL
NPQAPPAFFTLDAVLRSAEQYVDEFARFDFIRKFLDGHDEAWAEANIIMA
IILGYKFDEWGNINLEDVHERFRELAFPPDFRGNEEMRAMLDAILREDED
EEKMKGLEEFLEVMVGKAYYHQSDKGDNEDFACRATLIKWIYEYDFVNDW
PRLPTVQALLEVKARIDAKQEENKPPQRFLY

mRNA from alignment at CM002468.1:487384..488973+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6426 ID=rna6426|Name=rna6426|organism=Nannochloropsis gaditana|type=mRNA|length=1590bp|location=Sequence derived from alignment at CM002468.1:487384..488973+ (Nannochloropsis gaditana)
ATGCTTCTGCACATCGGGAAGGTTGGAAGAAAAGTGGCTGTCTATTTCCT
GTTGGCCTTCGCCTTCGCAGGCGAACCTACTCAAgccttcctgcccgtcc
tGCGAGCTTCTTCGCCATTGTTGCCACATTCATTGTCCGTTGTGCGTCAT
GTTCCTGGTAAGCGCATTGGAAGTAGATGTACGGTAAAGTGCATTTCCGC
TCACAAGGCAACTTGGCTCATCGTTTCGGCGTTTGAGGAAATGCGGATTT
GACAGCGGACTGAAGGAGCTTGCAGAAATTTTCATGAACGGATCTATTTT
GAACAAATATGTTTTTGCCGCTGTTAGCAATCTTGCCATTCCATGCTCTT
TAATATATatagagagagggagcgcagGAATTTTGGGAAACGATATGTCG
ATTCGGAATGctcatttaaaaaaaacacacGTTCCGACTTTTCTGTGTTA
GATCTAGGCCTGACAAAAGAcagctcttcctcgtcgaagTCTTCCTGTCG
GCCTGTCTCTTTATCTTCAGTGAATTCCGCATCCCCTTCTGGTGGGTCGA
ATGAGGTGGCCGAGGACGGGGTCTCTCTCAAGGACCTGCAGGACCTGGGA
GCCGATGCCGCATTTTTGGAAACGCAGGTAGTGGAATGGCTTGACAACGA
ATGGATACCGCAGGATTGTCATCAGGAGGTTGCAAAAGTTGCTGCCAAGG
CCTATGTGAAGGCCCGTGATGAGGGCATCGCCGACCTTGGCGGAGTCCTA
CTGCACGTGGGCACCgagctggaggacatggacatGGGGGACGCATTTGT
GGACGCCTGGATGGTGGCCAATAAAGTCTCAGACCTTCTACTTATGCGCA
TGGGCCGCGAAGTCTGCTGTCCGGAGCCGGAGTTTACGGACGAGCAGCGT
GTGCTCATGACGGAGGGTCGCGGAGAGCGGGAGATCATAGCGTCCGGCCT
CCTGGGACGCGGTGCTCCTGGCAGCAAAGCTACCCTTGGCGGCGGGAGTG
GTGGCAGCTCCTTGCTCAAGGACAAAGATGTACCACAATTACTGAATCCT
CAAGCCCCCCCTGCATTTTTTACGTTGGACGCGGTCCTACGTTCAGCCGA
GCAATACGTCGACGAGTTCGCGCGCTTCGATTTTATCCGTAAATTTCTGG
ATGGCCACGATGAAGCGTGGGCTGAAGCCAACATCATCATGGCAATAATA
CTTGGCTACAAATTTGATGAATGGGGCAACATCAACCTTGAAGACGTGCA
TGAACGCTTTCGAGAGCTTGCTTTCCCACCTGACTTTCGGGGAAACGAGG
AAATGCGAGCCATGTTAGACGCTATCCTTcgggaggatgaagatgaagag
aaaatgaaggggctggaggaaTTTCTCGAAGTTATGGTAGGTAAAGCTTA
CTACCATCAATCGGACAAAGGTGATAACGAAGATTTTGCCTGTCGCGCGA
CACTTATAAAGTGGATCTACGAATATGATTTTGTGAATGACTGGCCTAGA
CTCCCCACCGTCCAGGCATTGCTTGAGGTGAAAGCCCGCATTGATgccaa
gcaggaggagaacaAGCCACCTCAACGTTTCCTCTATTGA

Coding sequence (CDS) from alignment at CM002468.1:487384..488973+

>rna6426 ID=rna6426|Name=rna6426|organism=Nannochloropsis gaditana|type=CDS|length=2592bp|location=Sequence derived from alignment at CM002468.1:487384..488973+ (Nannochloropsis gaditana)
ATGCTTCTGCACATCGGGAAGGTTGGAAGAAAAGTGGCTGTCTATTTCCT
GTTGGCCTTCGCCTTCGCAGGCGAACCTACTCAAgccttcctgcccgtcc
tGCGAGCTTCTTCGCCATTGTTGCCACATTCATTGTCCGTTGTGCGTCAT
GTTCCTGATCTAGGCCTGACAAAAGAcagctcttcctcgtcgaagTCTTC
CTGTCGGCCTGTCTCTTTATCTTCAGTGAATTCCGCATCCCCTTCTGGTG
GGTCGAATGAGGTGGCCGAGGACGGGGTCTCTCTCAAGGACCTGCAGGAC
CTGGGAGCCGATGCCGCATTTTTGGAAACGCAGGTAGTGGAATGGCTTGA
CAACGAATGGATACCGCAGGATTGTCATCAGGAGGTTGCAAAAGTTGCTG
CCAAGGCCTATGTGAAGGCCCGTGATGAGGGCATCGCCGACCTTGGCGGA
GTCCTACTGCACGTGGGCACCgagctggaggacatggacatGGGGGACGC
ATTTGTGGACGCCTGGATGGTGGCCAATAAAGTCTCAGACCTTCTACTTA
TGCGCATGGGCCGCGAAGTCTGCTGTCCGGAGCCGGAGTTTACGGACGAG
CAGCGTGTGCTCATGACGGAGGGTCGCGGAGAGCGGGAGATCATAGCGTC
CGGCCTCCTGGGACGCGGTGCTCCTGGCAGCAAAGCTACCCTTGGCGGCG
GGAGTGGTGGCAGCTCCTTGCTCAAGGACAAAGATGTACCACAATTACTG
AATCCTCAAGCCCCCCCTGCATTTTTTACGTTGGACGCGGTCCTACGTTC
AGCCGAGCAATACGTCGACGAGTTCGCGCGCTTCGATTTTATCCGTAAAT
TTCTGGATGGCCACGATGAAGCGTGGGCTGAAGCCAACATCATCATGGCA
ATAATACTTGGCTACAAATTTGATGAATGGGGCAACATCAACCTTGAAGA
CGTGCATGAACGCTTTCGAGAGCTTGCTTTCCCACCTGACTTTCGGGGAA
ACGAGGAAATGCGAGCCATGTTAGACGCTATCCTTcgggaggatgaagat
gaagagaaaatgaaggggctggaggaaTTTCTCGAAGTTATGGTAGGTAA
AGCTTACTACCATCAATCGGACAAAGGTGATAACGAAGATTTTGCCTGTC
GCGCGACACTTATAAAGTGGATCTACGAATATGATTTTGTGAATGACTGG
CCTAGACTCCCCACCGTCCAGGCATTGCTTGAGGTGAAAGCCCGCATTGA
TgccaagcaggaggagaacaAGCCACCTCAACGTTTCCTCTATTGAATGC
TTCTGCACATCGGGAAGGTTGGAAGAAAAGTGGCTGTCTATTTCCTGTTG
GCCTTCGCCTTCGCAGGCGAACCTACTCAAgccttcctgcccgtcctGCG
AGCTTCTTCGCCATTGTTGCCACATTCATTGTCCGTTGTGCGTCATGTTC
CTGATCTAGGCCTGACAAAAGAcagctcttcctcgtcgaagTCTTCCTGT
CGGCCTGTCTCTTTATCTTCAGTGAATTCCGCATCCCCTTCTGGTGGGTC
GAATGAGGTGGCCGAGGACGGGGTCTCTCTCAAGGACCTGCAGGACCTGG
GAGCCGATGCCGCATTTTTGGAAACGCAGGTAGTGGAATGGCTTGACAAC
GAATGGATACCGCAGGATTGTCATCAGGAGGTTGCAAAAGTTGCTGCCAA
GGCCTATGTGAAGGCCCGTGATGAGGGCATCGCCGACCTTGGCGGAGTCC
TACTGCACGTGGGCACCgagctggaggacatggacatGGGGGACGCATTT
GTGGACGCCTGGATGGTGGCCAATAAAGTCTCAGACCTTCTACTTATGCG
CATGGGCCGCGAAGTCTGCTGTCCGGAGCCGGAGTTTACGGACGAGCAGC
GTGTGCTCATGACGGAGGGTCGCGGAGAGCGGGAGATCATAGCGTCCGGC
CTCCTGGGACGCGGTGCTCCTGGCAGCAAAGCTACCCTTGGCGGCGGGAG
TGGTGGCAGCTCCTTGCTCAAGGACAAAGATGTACCACAATTACTGAATC
CTCAAGCCCCCCCTGCATTTTTTACGTTGGACGCGGTCCTACGTTCAGCC
GAGCAATACGTCGACGAGTTCGCGCGCTTCGATTTTATCCGTAAATTTCT
GGATGGCCACGATGAAGCGTGGGCTGAAGCCAACATCATCATGGCAATAA
TACTTGGCTACAAATTTGATGAATGGGGCAACATCAACCTTGAAGACGTG
CATGAACGCTTTCGAGAGCTTGCTTTCCCACCTGACTTTCGGGGAAACGA
GGAAATGCGAGCCATGTTAGACGCTATCCTTcgggaggatgaagatgaag
agaaaatgaaggggctggaggaaTTTCTCGAAGTTATGGTAGGTAAAGCT
TACTACCATCAATCGGACAAAGGTGATAACGAAGATTTTGCCTGTCGCGC
GACACTTATAAAGTGGATCTACGAATATGATTTTGTGAATGACTGGCCTA
GACTCCCCACCGTCCAGGCATTGCTTGAGGTGAAAGCCCGCATTGATgcc
aagcaggaggagaacaAGCCACCTCAACGTTTCCTCTATTGA

Synonyms

Publications