|
|
Properties
| Property Name | Value |
|---|
| Product | gns1 sur4 family protein |
| Orig transcript id | gnl|cribi|Naga_100020g80.5392.mrna |
| Orig protein id | gnl|cribi|Naga_100020g80.5392 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:434177..436201 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6402 ID=rna6402|Name=rna6402|organism=Nannochloropsis gaditana|type=mRNA|length=1203bp
CTTACTAAGGATCATGACGAGATTTGTTGCTTGCGCGGTATTTCTGTTCG
TTCACGTCGCCTTGACCGGTATCAGCGTCACAACCTGCCAACACACTCAA
GGCCGGTGTGCTTCAGCATTTTTGCGCCCATCACAATCAGCGTCTTCAAC
TCGCAAAGCATTCCATGATGTTGAAGTAAAAGATGTGCCGTTGATAAATT
ATGTGAGTGTAGCTCGATATCCACTCATAGGATGGCCAAAGTGGGCCCCC
AAGCTGCACACTGCGGTAGTGGTCAGTACCATGACAACGTCAGATGACGT
CCCAAAAAGACCACAGAGCATTTGTGTCGCTGCCTCTTCACAGCACATAC
TATTTGACTTCATTCCTGCCGCTCCGACGGATGTTCGGACCGCCCGAAGC
TTACTTTGGGGTGAACGAGTGCCCGGAATTATTCGAGAAAAGGCAATCAA
CTCGGCTCCCCAATCACTTGCTTTTCAAGGAATTTGTCGGCGAAGATTGG
ATGACATTCGTGATTTTTGTTCTACGTACGACGCGGAACTCCACCTTTTG
GATAATAACTGCCACACCTTTACACAAAAAATGGTTTCCTTTCTTCTTGC
TGATGATATATCAATGCGGAACGAAATTATATGGAAGAGGACCGAGTTGC
AATAATTCGAGATCGGCGGTCTATCAGTTTGACTGTTTGCGTGTTTCTGT
ATCGTGAAATAAGTTTCAGCATGCGAGTGCGGAGATACAGATGTAAACTA
AATAAATGCTTCAGCATGGGATTTTTTTCACGAAAACCTTTGTCATTGCA
CGCCGCGCACTGTTGTGAGCTCCTGTTTGAACGCAGCATCAGATTGTTGA
TCTGATCAAGTCAGGGCTGCTCCAGGTGATTATCGGCGAACTATAAATTG
ATACGCGGGTACAGCTAAAGCATTCTAGGTTTATGTTGTTGCTCATATAC
AGTGCAATTGAATTGAAGCACAAGGAAAAGCTCTATTTGACGTCAATTGC
TCGTCCTAAAGCTTTATTCGTTTCATTACGGTTGACCCGCGAAGCTGTCA
TTAAGCTATATGTTATTGGAAAAAGCAAAGTGAGCAAAACTCAAGAATCG
AAAGCAACTGAAGAAGTTATTTACGAGATCCTTCATAACACAGATGACGA
ATGGAGTTCGCGATATATGGTTTTTGGTAGGAACTAATTGACAGAATGGT
TGG back to topprotein sequence of rna6402 >rna6402-protein ID=rna6402-protein|Name=rna6402|organism=Nannochloropsis gaditana|type=polypeptide|length=441bp
MIPLLPIALGGVLAAPFMGTLYRRATESLHIAQTAYEHRIAGGLQPTTPL
INLFVVENQEQLLVWMNLGYLVLTCGLYAHMRRREKAHQLKQVLTVYNLI
NVLVSSYVSASILKYKLFSSVLNAPLPQHANSHSPPFIATSFICNQLPLG
HPGLASVFAVYYLQKYFEFLDTYFFILRRSFRQVTFLHLFHHTSITVIVG
SLMPFDFGGDMYFPILVNSLCHVAVYLHYFCTCLGLNPWWSAHLATLQVA
QFAAIFLQSLLAFYEGPRCGSPDFSKILMMVYTGSMLVLFSDFFFKRYIL
RQPAYDMCGVMKNDPAEAGLSTLSYVGSVRLGPDGSAVVCLPRHFREGLS
SPLYVYHLTPVGSPMPNLYVSREVLWGSGISDGEINRKRGDRTSSEGVVL
MEQVVQRAGGSYTFVVRGGRPKGLVSWTVCCVVGDEAIRQH back to topmRNA from alignment at CM002468.1:434177..436201+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6402 ID=rna6402|Name=rna6402|organism=Nannochloropsis gaditana|type=mRNA|length=2025bp|location=Sequence derived from alignment at CM002468.1:434177..436201+ (Nannochloropsis gaditana)
gaggttattGAAGTGAGAGAGGTCCGAGCCCGAGTGCCGACCCCGTCGTG
TTGACAAACATTGTTTTAGGAGCCTGGTATCCGCATCATACCGATAATAT
GACCCATGCATCTGCTCACAGGGTAGGTCTTTGAGCTCTTTTGCGGTACC
TTGAGCGCCGTCGGGAAAACTTCCATTGTAGCGCTTCGCAGCTCGACGAC
TCCATCACAGAGAtgattcctctccttcctatTGCCCTTGGGGGAGTGCT
TGCTGCACCATTTATGGGAACCCTTTACAGGCGTGCTACAGAGAGCTTGC
ATATCGCCCAAACCGCATACGAACATCGTATAGCTGGGGGTCTCCAGCCT
ACGACACCTTTAATAAATCTCTTCGTTGTCGAGAACCAAGAGCAACTTTT
GGTTTGGATGAACCTGGGATACCTCGTTCTTACGTGCGGTCTATACGCTC
ATATGCGACGTCGGGAGAAAGCGCATCAACTTAAGCAAGTTTTGACTGTA
TACAATCTCATCAATGTTTTGGTCTCATCCTACGTGTCGGCTTCCATCCT
AAAATACAAATTGTTTTCCTCCGTGCTGAATGCACCGCTTCCTCAGCATG
CGAACTCGCATTCACCACCTTTTATTGCGACATCATTTATTTGCAACCAG
CTACCTCTCGGACACCCGGGTCTAGCGTCTGTCTTTGCTGTGTACTATCT
TCAAAAGGTGCGTCAAACACGGAACAAAAACTTTTATACAGGTGTACCAC
GAGTACCACAGTTTATATGGCTTTTATGGCTTACCCTTGTGCGGCTCATT
CACTTTTGGGTTATATGCGCTGTGTTTTCCAATTCGTTTGCAGAAATCCT
GCTCACCCAGAACGAGATCTGACACTTCTTTCGTCACCTCCAACATTGTC
CTGCAtatctccccttccccccccaaacaCCCATAGTACTTTGAATTCCT
GGACACGTATTTCTTCATCTTGCGACGCTCTTTTCGGCAAGTCacctttc
tccacctcttccatcatACCTCCATCACCGTGATTGTCGGCTCGCTTATG
CCCTTCGATTTTGGGGGAGACATGTACTTTCCTATCCTTGTCAACAGCCT
CTGCCACGTGGCCGTCTACCTTCACTACTTCTGTACTTGCCTAGGCCTCA
ATCCCTGGTGGTCCGCTCATCTTGCCACCCTCCAGGTCGCCCAGTTTGcc
gccattttcctccaGAGCCTCTTGGCGTTCTACGAAGGGCCCCGGTGCGG
TTCGCCTGACTTCAGCAAGATCTTGATGATGGTCTATACGGGTTCCATGC
TCGTCTTGTTCTCggatttctttttcaagcGCTATATCCTGCGCCAGCCA
GCGTACGACATGTGCGGTGTCATGAAAAATGACCCGGCAGAGGCGGGGCT
TTCAACCTTGAGCTATGTAGGCAGTGTGCGGCTCGGACCAGACGGCTCGG
CTGTTGTGTGTCTACCTCGACATTTTCGTGAAGGCCTCTCTTCGCCCCTG
TATGTCTATCACCTAACGCCAGTAGGCTCACCGATGCCAAACCTTTACGT
GTCTCGAGAGGTGCTTTGGGGGAGCGGAATTAGCGACGGGGAGATCAACC
GTAAGAGAGGCGATAGAACCAGCAGTGAAGGTGTTGTCTTGATGGAGCAG
GTGGTGCAGCGGGCTGGCGGGAGTTACACTTTCGTCGTacgcggagggag
gcctaAGGGGCTGGTGTCCTGGACCGTATGTTGCGTCGTAGGCGATGAGG
CCATTCGGCAACATTGAAAAAATAAACCAAATATGTCGCACAGAAACAAA
ATTGTAAGTTCGAGTGTGCTTCATTAATACAAGAAGTGTATGACCCACCA
TTGCATGGTTCTCAGAACAAAAAAGGCTCCGTTTATACGGCGTATTGTAC
AGCAAAATATAATGGGAATGCACAGAGTAGTGTAAGATATTTTTCCTAAG
AATCAAAGCCGTTGCGTAAGTGCGCATACATACAAGCAATTGTACACTCT
TGTTGACAAAAAACAGGCGGCTTGG back to topCoding sequence (CDS) from alignment at CM002468.1:434177..436201+ >rna6402 ID=rna6402|Name=rna6402|organism=Nannochloropsis gaditana|type=CDS|length=2652bp|location=Sequence derived from alignment at CM002468.1:434177..436201+ (Nannochloropsis gaditana)
AtgattcctctccttcctatTGCCCTTGGGGGAGTGCTTGCTGCACCATT
TATGGGAACCCTTTACAGGCGTGCTACAGAGAGCTTGCATATCGCCCAAA
CCGCATACGAACATCGTATAGCTGGGGGTCTCCAGCCTACGACACCTTTA
ATAAATCTCTTCGTTGTCGAGAACCAAGAGCAACTTTTGGTTTGGATGAA
CCTGGGATACCTCGTTCTTACGTGCGGTCTATACGCTCATATGCGACGTC
GGGAGAAAGCGCATCAACTTAAGCAAGTTTTGACTGTATACAATCTCATC
AATGTTTTGGTCTCATCCTACGTGTCGGCTTCCATCCTAAAATACAAATT
GTTTTCCTCCGTGCTGAATGCACCGCTTCCTCAGCATGCGAACTCGCATT
CACCACCTTTTATTGCGACATCATTTATTTGCAACCAGCTACCTCTCGGA
CACCCGGGTCTAGCGTCTGTCTTTGCTGTGTACTATCTTCAAAAGTACTT
TGAATTCCTGGACACGTATTTCTTCATCTTGCGACGCTCTTTTCGGCAAG
TCacctttctccacctcttccatcatACCTCCATCACCGTGATTGTCGGC
TCGCTTATGCCCTTCGATTTTGGGGGAGACATGTACTTTCCTATCCTTGT
CAACAGCCTCTGCCACGTGGCCGTCTACCTTCACTACTTCTGTACTTGCC
TAGGCCTCAATCCCTGGTGGTCCGCTCATCTTGCCACCCTCCAGGTCGCC
CAGTTTGccgccattttcctccaGAGCCTCTTGGCGTTCTACGAAGGGCC
CCGGTGCGGTTCGCCTGACTTCAGCAAGATCTTGATGATGGTCTATACGG
GTTCCATGCTCGTCTTGTTCTCggatttctttttcaagcGCTATATCCTG
CGCCAGCCAGCGTACGACATGTGCGGTGTCATGAAAAATGACCCGGCAGA
GGCGGGGCTTTCAACCTTGAGCTATGTAGGCAGTGTGCGGCTCGGACCAG
ACGGCTCGGCTGTTGTGTGTCTACCTCGACATTTTCGTGAAGGCCTCTCT
TCGCCCCTGTATGTCTATCACCTAACGCCAGTAGGCTCACCGATGCCAAA
CCTTTACGTGTCTCGAGAGGTGCTTTGGGGGAGCGGAATTAGCGACGGGG
AGATCAACCGTAAGAGAGGCGATAGAACCAGCAGTGAAGGTGTTGTCTTG
ATGGAGCAGGTGGTGCAGCGGGCTGGCGGGAGTTACACTTTCGTCGTacg
cggagggaggcctaAGGGGCTGGTGTCCTGGACCGTATGTTGCGTCGTAG
GCGATGAGGCCATTCGGCAACATTGAAtgattcctctccttcctatTGCC
CTTGGGGGAGTGCTTGCTGCACCATTTATGGGAACCCTTTACAGGCGTGC
TACAGAGAGCTTGCATATCGCCCAAACCGCATACGAACATCGTATAGCTG
GGGGTCTCCAGCCTACGACACCTTTAATAAATCTCTTCGTTGTCGAGAAC
CAAGAGCAACTTTTGGTTTGGATGAACCTGGGATACCTCGTTCTTACGTG
CGGTCTATACGCTCATATGCGACGTCGGGAGAAAGCGCATCAACTTAAGC
AAGTTTTGACTGTATACAATCTCATCAATGTTTTGGTCTCATCCTACGTG
TCGGCTTCCATCCTAAAATACAAATTGTTTTCCTCCGTGCTGAATGCACC
GCTTCCTCAGCATGCGAACTCGCATTCACCACCTTTTATTGCGACATCAT
TTATTTGCAACCAGCTACCTCTCGGACACCCGGGTCTAGCGTCTGTCTTT
GCTGTGTACTATCTTCAAAAGTACTTTGAATTCCTGGACACGTATTTCTT
CATCTTGCGACGCTCTTTTCGGCAAGTCacctttctccacctcttccatc
atACCTCCATCACCGTGATTGTCGGCTCGCTTATGCCCTTCGATTTTGGG
GGAGACATGTACTTTCCTATCCTTGTCAACAGCCTCTGCCACGTGGCCGT
CTACCTTCACTACTTCTGTACTTGCCTAGGCCTCAATCCCTGGTGGTCCG
CTCATCTTGCCACCCTCCAGGTCGCCCAGTTTGccgccattttcctccaG
AGCCTCTTGGCGTTCTACGAAGGGCCCCGGTGCGGTTCGCCTGACTTCAG
CAAGATCTTGATGATGGTCTATACGGGTTCCATGCTCGTCTTGTTCTCgg
atttctttttcaagcGCTATATCCTGCGCCAGCCAGCGTACGACATGTGC
GGTGTCATGAAAAATGACCCGGCAGAGGCGGGGCTTTCAACCTTGAGCTA
TGTAGGCAGTGTGCGGCTCGGACCAGACGGCTCGGCTGTTGTGTGTCTAC
CTCGACATTTTCGTGAAGGCCTCTCTTCGCCCCTGTATGTCTATCACCTA
ACGCCAGTAGGCTCACCGATGCCAAACCTTTACGTGTCTCGAGAGGTGCT
TTGGGGGAGCGGAATTAGCGACGGGGAGATCAACCGTAAGAGAGGCGATA
GAACCAGCAGTGAAGGTGTTGTCTTGATGGAGCAGGTGGTGCAGCGGGCT
GGCGGGAGTTACACTTTCGTCGTacgcggagggaggcctaAGGGGCTGGT
GTCCTGGACCGTATGTTGCGTCGTAGGCGATGAGGCCATTCGGCAACATT
GA back to top
|