EWM24298.1, cds6373 (CDS) Nannochloropsis gaditana

Overview
NameEWM24298.1
Unique Namecds6373
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:404017..404832 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24298.1
Productudp-n-acetylglucosamine transferase subunit alg14
Orig transcript idgnl|cribi|Naga_100047g31.6061.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:404017..404832 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0006464cellular protein modification process
GO:0006629lipid metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013969Oligosacch_biosynth_Alg14
Homology
BLAST of EWM24298.1 vs. NCBI_GenBank
Match: gi|585105690|gb|EWM24298.1| (udp-n-acetylglucosamine transferase subunit alg14 [Nannochloropsis gaditana])

HSP 1 Score: 551.206 bits (1419), Expect = 0.000e+0
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0
Query:    1 MPSVVHLQGRSIMPTSDNIKTYEKEGGMAILDLQESFARTLAIFAAIYVLCIVSALLAFRLYVVLPNRVTNARVTPPSVTEQHVRTTPAALLVVLGSGGHTKEMLTMLQGLEPLRYRPLVFVRAESDARSEGMVKAALPPPSELPSSSVSFSKPDYVLTVPRSRSVGQSWLTTPLTTLRALAASVALVARLQPDVILCNGPGTCIPICAAGYILRFLGVKHVKIIFVESFCRVTTLSLTGKLLYWAADRFLVQWPGLRDKYPQAEYLGQLC 271
            MPSVVHLQGRSIMPTSDNIKTYEKEGGMAILDLQESFARTLAIFAAIYVLCIVSALLAFRLYVVLPNRVTNARVTPPSVTEQHVRTTPAALLVVLGSGGHTKEMLTMLQGLEPLRYRPLVFVRAESDARSEGMVKAALPPPSELPSSSVSFSKPDYVLTVPRSRSVGQSWLTTPLTTLRALAASVALVARLQPDVILCNGPGTCIPICAAGYILRFLGVKHVKIIFVESFCRVTTLSLTGKLLYWAADRFLVQWPGLRDKYPQAEYLGQLC
Sbjct:    1 MPSVVHLQGRSIMPTSDNIKTYEKEGGMAILDLQESFARTLAIFAAIYVLCIVSALLAFRLYVVLPNRVTNARVTPPSVTEQHVRTTPAALLVVLGSGGHTKEMLTMLQGLEPLRYRPLVFVRAESDARSEGMVKAALPPPSELPSSSVSFSKPDYVLTVPRSRSVGQSWLTTPLTTLRALAASVALVARLQPDVILCNGPGTCIPICAAGYILRFLGVKHVKIIFVESFCRVTTLSLTGKLLYWAADRFLVQWPGLRDKYPQAEYLGQLC 271          
BLAST of EWM24298.1 vs. NCBI_GenBank
Match: gi|1173956128|gb|OQS02999.1| (40S ribosomal protein S19-3 [Thraustotheca clavata])

HSP 1 Score: 199.904 bits (507), Expect = 1.048e-58
Identity = 119/269 (44.24%), Postives = 153/269 (56.88%), Query Frame = 0
Query:   10 RSIMPTSDNIKTYEK------EGGMAILDLQESFARTLAIFAAIYVLCIVSALLAFRLYVVLPNRVTNARVTPPSVTEQHVRTTPAALLVVLGSGGHTKEMLTMLQGLEPLRYRPLVFVRAESDARSEGMVKAALPPPSELPSSSVSFSKPDYVLTVPRSRSVGQSWLTTPLTTLRALAASVALVARLQPDVILCNGPGTCIPICAAGYILRFLGVK-HVKIIFVESFCRVTTLSLTGKLLYWAADRFLVQWPGLRDKYPQAEYLGQLC 271
            R I+   + +K  EK      +GG  I    ++    +A   A+ V+ +V     +R + +LP RV N R T  S    H   T    LVVLGSGGHT EML +++ L   +Y PL FV A +D  S    K       E     + F        +PRSR VGQSWLTT  TT +A   S+ +V + QPD++LCNGPGTCIP+CAA ++LRFLGVK H KIIF ESF RVT LSL+GK+LY   D F+V WP L+  YP  +YLG LC
Sbjct:  107 RHILHQLEEMKVVEKCAEGVNKGGRRISSHGQTDLDRIAGQVALAVIAVV-----YRAWTILPARV-NGRATKASNASVH---TTYRTLVVLGSGGHTTEMLKLIKQLNVDKYVPLAFVVAATDDTSREKAKV------ERKEEQLKF------FEIPRSREVGQSWLTTIFTTAKAFLHSMGIVLKYQPDLLLCNGPGTCIPLCAAVFLLRFLGVKAHSKIIFCESFARVTHLSLSGKILYHFVDEFVVHWPQLQTAYPNTKYLGVLC 354          
BLAST of EWM24298.1 vs. NCBI_GenBank
Match: gi|658907467|ref|XP_008436463.1| (PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 homolog isoform X1 [Poecilia reticulata])

HSP 1 Score: 191.43 bits (485), Expect = 7.082e-57
Identity = 109/257 (42.41%), Postives = 153/257 (59.53%), Query Frame = 0
Query:   19 IKTYEKEGGMAILDLQESFARTLAI---FAAIYVLCIVSALLAFRLYVVLPNRVTNARVTPPSVTEQHVRTTPAALLVVLGSGGHTKEMLTMLQGLEPLRYRPLVFVRAESDARSEGMVKA--ALPPPSELPSSSVSFSKPDYVLTVPRSRSVGQSWLTTPLTTLRALAASVALVARLQPDVILCNGPGTCIPICAAGYILRFLGVKHVKIIFVESFCRVTTLSLTGKLLYWAADRFLVQWPGLRDKYPQAEYLGQL 270
            ++  E+  G  ++      A  +A+   F  ++ L + + L   R+Y VL     N+   PP  T  HV     A+LVV GSGGHT E+L ++  L    Y P  +V A++D  SE  + +     P S    S V F+    +  +PRSR V QSW ++ ++TL AL  S+ LV RLQPDV+LCNGPGTC+P+C  G +LR LG+K V I++VES CRV TLSLTG++LY  +D F VQW  LRDKYP+A +LG++
Sbjct:    1 MQQNERHSGEEVMSFWSKTASVVAVMWLFGVVFSLFMTALLFLLRVYFVL-----NSGSNPPK-TRSHV-----AVLVVAGSGGHTTEILRLMDSLSA-AYTPRHYVIADTDKMSEEKIVSFERCKPESH---SDVQFT----INRIPRSREVAQSWSSSVVSTLNALRYSIPLVFRLQPDVVLCNGPGTCVPLCMTGLLLRILGIKKVGIVYVESICRVQTLSLTGRILYLVSDYFFVQWSSLRDKYPKAIFLGRI 238          
BLAST of EWM24298.1 vs. NCBI_GenBank
Match: gi|290986705|ref|XP_002676064.1| (predicted protein [Naegleria gruberi] >gi|284089664|gb|EFC43320.1| predicted protein [Naegleria gruberi])

HSP 1 Score: 189.119 bits (479), Expect = 1.748e-56
Identity = 93/213 (43.66%), Postives = 136/213 (63.85%), Query Frame = 0
Query:   63 VVLPNRVTNARVTPPSVTEQHVRTTPAAL---LVVLGSGGHTKEMLTMLQGLEPLRYRPLVFVRAESDARSEGMVKAALPPPSELPSSSVSFSKPDYVLTVPRSRSVGQSWLTTPLTTLRALAASVALV-ARLQPDVILCNGPGTCIPICAAGYILRFLGVKHVKIIFVESFCRVTTLSLTGKLLYWAADRFLVQWPGLRDKYPQAEYLGQLC 271
            ++LP R+           ++   ++P+++   LVVLGSGGHT EM+ ++Q L+P RY+ L FV A++D+ SE  V+  L   ++    S  +        +PRSR V QS+ T+  TTL+AL  +  +    + PD+I+ NGPGTCIP+C + Y+ RFLG+KHVKIIF+ES CRV +LS +GK++Y  ADRFLV WP L+ KY   EY G++C
Sbjct:    1 MILPKRIKEGSFKLDKSNKK--LSSPSSIIKTLVVLGSGGHTGEMMDVIQTLDPKRYK-LEFVLADTDSTSEKFVRNLLKDKTDFEPLSFHY--------IPRSREVHQSYFTSIFTTLKALFYTTVITNVNINPDLIIVNGPGTCIPVCLSAYLTRFLGIKHVKIIFIESVCRVESLSASGKIMYLLADRFLVHWPQLQHKYKNVEYHGRMC 202          
BLAST of EWM24298.1 vs. NCBI_GenBank
Match: gi|675370209|gb|KFM63111.1| (UDP-N-acetylglucosamine transferase subunit ALG14-like protein, partial [Stegodyphus mimosarum])

HSP 1 Score: 187.578 bits (475), Expect = 1.161e-55
Identity = 102/222 (45.95%), Postives = 138/222 (62.16%), Query Frame = 0
Query:   47 IYVLCIVSALLAF---RLYVVLPNRVTNARVTPPSVTEQHVRTTPAALLVVLGSGGHTKEMLTMLQGLEPLRYRPLVFVRAESDARSEGMVKAALPPPSELPSSSVSFSKPDYVLTVPRSRSVGQSWLTTPLTTLRALAASVALVARLQPDVILCNGPGTCIPICAAGYILRFLGVKHVKIIFVESFCRVTTLSLTGKLLYWAADRFLVQWPGLRDKYPQAE 265
            +Y + IV  L+     R+++V         VTP       VR + A L++VLGSGGHT EML ++  L+  ++RP V+V A +D  SE   KA      +  + SV     +    +PRSR V QSWL+T  TTL +   S  LV + +P+ ILCNGPGTC+P+C + + L  LG KH+KII+VES CRV T+SLTGK+LY  AD FLVQWPGLR+KYP+A+
Sbjct:    7 VYFVNIVRTLVCLFFVRVFIVYQRIHKKKNVTP-------VRRSAAKLMIVLGSGGHTFEMLRLISNLDE-KFRPRVYVLANTDILSEQ--KAQAFEAIKTSNKSVELYTIE---KIPRSREVNQSWLSTVFTTLISCFHSFLLVIKHKPEAILCNGPGTCVPLCISAFSLHVLGWKHIKIIYVESICRVHTMSLTGKILYNMADHFLVQWPGLREKYPRAK 215          
BLAST of EWM24298.1 vs. NCBI_GenBank
Match: gi|1009603725|ref|XP_015929887.1| (UDP-N-acetylglucosamine transferase subunit ALG14 homolog isoform X3 [Parasteatoda tepidariorum])

HSP 1 Score: 186.422 bits (472), Expect = 2.941e-55
Identity = 94/225 (41.78%), Postives = 139/225 (61.78%), Query Frame = 0
Query:   46 AIYVLCIVSALLAFRLYVVLPNRVTNARVTPPSVTEQHVRTTPAALLVVLGSGGHTKEMLTMLQGLEPLRYRPLVFVRAESDARSEGMVKAALPPPSELPSSSVSFSKPDYVLTVPRSRSVGQSWLTTPLTTLRALAASVALVARLQPDVILCNGPGTCIPICAAGYILRFLGVKHVKIIFVESFCRVTTLSLTGKLLYWAADRFLVQWPGLRDKYPQAEYLGQL 270
             I +L  ++ L   R+++V   R+ N + T P      V+T     +VVLGSGGHT EM  +++ +   ++ P +++ A SD  SE   K+       LP + V       +  +PRSR V QS++T+ LTTL+A   S  L+ R  PD ++CNGPGTC+P+C + ++L  LG+KH+K I+VES CRV+TLSL+GK+LY   D F+VQWP +R KYP A+Y G+L
Sbjct:    6 CINILTTLTCLFVVRMWIVYL-RIHNNKRTIPRAKTPSVKT-----MVVLGSGGHTFEMFQLIKNISN-KFSPRIYIIANSDTLSECKAKSFEESLDNLPENYV-------IERIPRSREVAQSYITSVLTTLKASIFSFLLICRHMPDCLICNGPGTCVPLCLSAFLLHSLGLKHIKTIYVESICRVSTLSLSGKILYHLTDYFIVQWPDIRKKYPHAKYFGRL 216          
BLAST of EWM24298.1 vs. NCBI_GenBank
Match: gi|1009603719|ref|XP_015929885.1| (UDP-N-acetylglucosamine transferase subunit ALG14 homolog isoform X1 [Parasteatoda tepidariorum])

HSP 1 Score: 186.422 bits (472), Expect = 3.157e-55
Identity = 94/225 (41.78%), Postives = 139/225 (61.78%), Query Frame = 0
Query:   46 AIYVLCIVSALLAFRLYVVLPNRVTNARVTPPSVTEQHVRTTPAALLVVLGSGGHTKEMLTMLQGLEPLRYRPLVFVRAESDARSEGMVKAALPPPSELPSSSVSFSKPDYVLTVPRSRSVGQSWLTTPLTTLRALAASVALVARLQPDVILCNGPGTCIPICAAGYILRFLGVKHVKIIFVESFCRVTTLSLTGKLLYWAADRFLVQWPGLRDKYPQAEYLGQL 270
             I +L  ++ L   R+++V   R+ N + T P      V+T     +VVLGSGGHT EM  +++ +   ++ P +++ A SD  SE   K+       LP + V       +  +PRSR V QS++T+ LTTL+A   S  L+ R  PD ++CNGPGTC+P+C + ++L  LG+KH+K I+VES CRV+TLSL+GK+LY   D F+VQWP +R KYP A+Y G+L
Sbjct:    9 CINILTTLTCLFVVRMWIVYL-RIHNNKRTIPRAKTPSVKT-----MVVLGSGGHTFEMFQLIKNISN-KFSPRIYIIANSDTLSECKAKSFEESLDNLPENYV-------IERIPRSREVAQSYITSVLTTLKASIFSFLLICRHMPDCLICNGPGTCVPLCLSAFLLHSLGLKHIKTIYVESICRVSTLSLSGKILYHLTDYFIVQWPDIRKKYPHAKYFGRL 219          
BLAST of EWM24298.1 vs. NCBI_GenBank
Match: gi|1069966519|ref|XP_018284115.1| (glycosyltransferase family 1 protein [Phycomyces blakesleeanus NRRL 1555(-)] >gi|1026581311|gb|OAD66075.1| glycosyltransferase family 1 protein [Phycomyces blakesleeanus NRRL 1555(-)])

HSP 1 Score: 185.652 bits (470), Expect = 4.244e-55
Identity = 89/187 (47.59%), Postives = 122/187 (65.24%), Query Frame = 0
Query:   85 RTTPAALLVVLGSGGHTKEMLTMLQGLEPLRYRPLVFVRAESDARSEGMVKA-ALPPPSELPSSSVSFSKPDYVLTVPRSRSVGQSWLTTPLTTLRALAASVALVARLQPDVILCNGPGTCIPICAAGYILRFLGVKHVKIIFVESFCRVTTLSLTGKLLYWAADRFLVQWPGLRDKYPQAEYLGQL 270
            RT     +++LGSGGHT EM+ +++GL P+RY P ++V +E D  S    K   +   SE P           + T+PR+R VGQSW T P +  R L AS+ ++    PDVI+CNGPG+C+P+C   YI R LG+K ++I++VES  RV TLSLTGK+LY+ ADRF+VQWP L  +YP+AEY G L
Sbjct:   26 RTKSCKTMIILGSGGHTGEMVQLIKGLNPIRYNPRIYVVSEEDQLSCTKAKEHEMNIKSEFPCD---------IRTIPRARRVGQSWSTVPWSVFRTLLASLKMILLSPPDVIICNGPGSCVPVCMVAYIPRILGIKPIRIVYVESLARVKTLSLTGKILYFFADRFIVQWPNLIQRYPRAEYKGIL 203          
BLAST of EWM24298.1 vs. NCBI_GenBank
Match: gi|470509860|ref|XP_004367764.1| (Alg14 family oligosaccharide biosynthesis protein [Acanthamoeba castellanii str. Neff] >gi|440801674|gb|ELR22683.1| Alg14 family oligosaccharide biosynthesis protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 186.037 bits (471), Expect = 5.283e-55
Identity = 97/194 (50.00%), Postives = 126/194 (64.95%), Query Frame = 0
Query:   80 TEQHVRTTPAALLVVLGSGGHTKEMLTMLQGLEPLRYRPLVFVRAESDARSEGMVKAALPPPSELPSSSVSFSKPDYVLT--VPRSRSVGQSWLTTPLTTLRALAASVALVARLQPDVILCNGPGTCIPICAAGYILRFLGVKHVKIIFVESFCRVTTLSLTGKLLYWAADRFLVQWPGLRDKYPQAEYLGQLC 271
             E     +P + L+VLGSGGHT EML ++  L+P RY+P ++V A +DA S+           ++     SF       T  +PRSR VGQS+ ++  TT  AL  +V +V R  P +ILCNGPGTCIPICA+ YIL+F G K VKI++VES  RV TLSL+GKLLY  AD FLVQWP L+ KYP A++LG+LC
Sbjct:   41 NEDATTRSPVSTLIVLGSGGHTAEMLRLVGSLDPDRYQPRLYVWAATDAHSQ----------DKMQKFEASFGGVGQTRTAVIPRSREVGQSYFSSLFTTAFALLHAVGIVLRSSPQLILCNGPGTCIPICASAYILKFFGRK-VKIVYVESIARVETLSLSGKLLYRTADHFLVQWPQLQAKYPHAQFLGRLC 223          
BLAST of EWM24298.1 vs. NCBI_GenBank
Match: gi|1009603722|ref|XP_015929886.1| (UDP-N-acetylglucosamine transferase subunit ALG14 homolog isoform X2 [Parasteatoda tepidariorum])

HSP 1 Score: 185.267 bits (469), Expect = 1.052e-54
Identity = 92/222 (41.44%), Postives = 138/222 (62.16%), Query Frame = 0
Query:   49 VLCIVSALLAFRLYVVLPNRVTNARVTPPSVTEQHVRTTPAALLVVLGSGGHTKEMLTMLQGLEPLRYRPLVFVRAESDARSEGMVKAALPPPSELPSSSVSFSKPDYVLTVPRSRSVGQSWLTTPLTTLRALAASVALVARLQPDVILCNGPGTCIPICAAGYILRFLGVKHVKIIFVESFCRVTTLSLTGKLLYWAADRFLVQWPGLRDKYPQAEYLGQL 270
            +L  ++ L   R+++V   R+ N + T P      V+T     ++VLGSGGHT EM  +++ +   ++ P +++ A SD  SE   K+       LP + V       +  +PRSR V QS++T+ LTTL+A   S  L+ R  PD ++CNGPGTC+P+C + ++L  LG+KH+K I+VES CRV+TLSL+GK+LY   D F+VQWP +R KYP A+Y G+L
Sbjct:   12 ILTTLTCLFVVRMWIVYL-RIHNNKRTIPRAKTPSVKT-----MIVLGSGGHTFEMFQLIKNISN-KFSPRIYIIANSDTLSECKAKSFEESLDNLPENYV-------IERIPRSREVAQSYITSVLTTLKASIFSFLLICRHMPDCLICNGPGTCVPLCLSAFLLHSLGLKHIKTIYVESICRVSTLSLSGKILYHLTDYFIVQWPDIRKKYPHAKYFGRL 219          
The following BLAST results are available for this feature:
BLAST of EWM24298.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105690|gb|EWM24298.1|0.000e+0100.00udp-n-acetylglucosamine transferase subunit alg14 ... [more]
gi|1173956128|gb|OQS02999.1|1.048e-5844.2440S ribosomal protein S19-3 [Thraustotheca clavata... [more]
gi|658907467|ref|XP_008436463.1|7.082e-5742.41PREDICTED: UDP-N-acetylglucosamine transferase sub... [more]
gi|290986705|ref|XP_002676064.1|1.748e-5643.66predicted protein [Naegleria gruberi] >gi|28408966... [more]
gi|675370209|gb|KFM63111.1|1.161e-5545.95UDP-N-acetylglucosamine transferase subunit ALG14-... [more]
gi|1009603725|ref|XP_015929887.1|2.941e-5541.78UDP-N-acetylglucosamine transferase subunit ALG14 ... [more]
gi|1009603719|ref|XP_015929885.1|3.157e-5541.78UDP-N-acetylglucosamine transferase subunit ALG14 ... [more]
gi|1069966519|ref|XP_018284115.1|4.244e-5547.59glycosyltransferase family 1 protein [Phycomyces b... [more]
gi|470509860|ref|XP_004367764.1|5.283e-5550.00Alg14 family oligosaccharide biosynthesis protein ... [more]
gi|1009603722|ref|XP_015929886.1|1.052e-5441.44UDP-N-acetylglucosamine transferase subunit ALG14 ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6388rna6388Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications