rna6388, rna6388 (mRNA) Nannochloropsis gaditana

Overview
Namerna6388
Unique Namerna6388
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length930
Alignment locationCM002468.1:403630..405032 -

Link to JBrowse

Properties
Property NameValue
Productudp-n-acetylglucosamine transferase subunit alg14
Orig transcript idgnl|cribi|Naga_100047g31.6061.mrna
Orig protein idgnl|cribi|Naga_100047g31.6061
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:403630..405032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100047g31gene6172Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24298.1cds6373Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6388rna6388-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6388 ID=rna6388|Name=rna6388|organism=Nannochloropsis gaditana|type=mRNA|length=930bp
ATGTTGGATGCAACCAAGATTGAGCAAATGATAACGACAGCGGCAGAAGC
GGGCGAGCTCAGACACGTCATCTACCTCTCAAGCCTGGGTTCGGAGAGAG
CAGCGTTCCAGTTCTCGCTCGACAGCATGAGCGGGGCACTCGAGAAGAAG
AAGGCGGTAGAGCAGAGTGTTCGCCGGCTGAGCAAGATGCTGGGGTTTAA
TTTCTCCATCATCCGCGTAGGAAGCTTGGGTCCGGGCAATGCGGGGGAGC
AGGCCCTCTCTCTCGAACCGGGAGACCCCTTCTCGGCAGGTCAGACCAAC
TGGCCGACGGCGGCCCAGGCGGTGGTACAGTCCATGGCTCTGCCCTCCGC
ATTGAACGCCTCTTTCTCCGTGGTCAACTGCAAGGGGAAGGAGGCGCCCG
TCGACGACGACTGGAGAGACAGCCTCCTGAAGGTGGTGGGGCCCGAGGTC
CTCCGTCTCACCTTCCGCGCCGCCCCTGTCGCGGACATGCGCATGTCCCT
GCGGGCATGGGCTCTGCAGTTCATGGAGGGAGAAAGGAAGCTGACCACCA
AAGTGTTCGCCGTCAGGACCCCTTTAGGCGCCAAGATCTACTTTCTTCCG
ACCATGCAGAACCTAGGGCCCGGCTTCAGGGAGGAGAAAGCCATCGAGAA
GGCGAGGATGAAGGGAGAGGCCTCGCTGGGAGGCCAGAAACCGACGCGAC
CCATCCTGGAGGGGGGGTTGGAGGTATGCGTGGAGGAGGTTGGGAAGGAA
GGAGGACGAGAGGCTGGGAAGAAAAGGGTACGAGTGCGGAGGATCGCTAT
GGAGGAAGGAACAGTGGTGAAGGCGATGTCGGAGAGGGAGCTTCTCGAGA
GTCTGAAGGCGGAGGTCGAGAGTACGGAGAAGATGGCCGCGCAGGGGCGA
AGCGTGGGGGGGGGGGCGCCTCCGGCCTAG
back to top

protein sequence of rna6388

>rna6388-protein ID=rna6388-protein|Name=rna6388|organism=Nannochloropsis gaditana|type=polypeptide|length=271bp
MPSVVHLQGRSIMPTSDNIKTYEKEGGMAILDLQESFARTLAIFAAIYVL
CIVSALLAFRLYVVLPNRVTNARVTPPSVTEQHVRTTPAALLVVLGSGGH
TKEMLTMLQGLEPLRYRPLVFVRAESDARSEGMVKAALPPPSELPSSSVS
FSKPDYVLTVPRSRSVGQSWLTTPLTTLRALAASVALVARLQPDVILCNG
PGTCIPICAAGYILRFLGVKHVKIIFVESFCRVTTLSLTGKLLYWAADRF
LVQWPGLRDKYPQAEYLGQLC
back to top

mRNA from alignment at CM002468.1:403630..405032-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6388 ID=rna6388|Name=rna6388|organism=Nannochloropsis gaditana|type=mRNA|length=1403bp|location=Sequence derived from alignment at CM002468.1:403630..405032- (Nannochloropsis gaditana)
AGTTGCGCATGCTTTATGCTTCCTTTGGCAATCCATAAAGCCCTTGGAAA
GGCAGGGCAAGGTCCACTTTCGGCACGTCTTTTGACAGCTCTTGCCATGG
AATTGCATGTGCTTTCCGCGTTTTGACGTCAAAAAGCGTGAACTTTTGGA
GAGTGATGGCCGAGTAAGACGCGAGCGACGGCGAGTCGCAGCTGATTGAC
ATGCCATCCGTCGTTCACCTCCAAGGTCGATCTATCATGCCAACCTCTGA
CAACATCAAAACATACGAAAAAGAAGGTGGGATGGCTATTCTGGACCTGC
AAGAATCATTCGCACGTACTCTCGCAATTTTCGCTGCCATCTACGTCCTG
TGCATCGTTTCCGCGCTCCTCGCATTCCGCTTGTACGTCGTTCTCCCCAA
CCGCGTCACCAACGCACGCGTAACACCGCCCTCCGTCACGGAACAGCATG
TGCGAACTACACCAGCAGCTTTGCTCGTGGTTTTGGGTTCGGGAGGACAC
ACCAAGGAGATGCTGACGATGCTTCAGGGTCTGGAACCCCTGCGCTACCG
GCCCCTCGTCTTTGTCCGGGCCGAGTCAGATGCCCGCAGTGAAGGGATGG
TGAAGGCAGCACTTCCACCTCCCTCGGAGTTGCCATCTTCATCCGTCTCA
TTTTCCAAACCTGACTACGTTTTGACTGTACCTCGCTCCCGTTCCGTCGG
ACAGTCATGGCTTACCACCCCTCTGACGACGCTCCGGGCGCTCGCGGCCT
CCGTGGCCCTGGTTGCGCGACTGCAGCCCGACGTCATCCTCTGTAATGGC
CCTGGGACTTGCATCCCTATATGCGCAGCCGGTTATATCCTTCGATTTCT
GGGCGTGAAGCATGTGAAGATAATATTTGTCGAGTCTTTCTGTCGGGTGA
CAACCTTATCCTTGACTGGCAAGCTTCTTTACTGGGCGGCAGACAGATTC
CTGGTACAATGGCCGGGCCTGCGAGACAAATACCCTCAGGCCGAGTACCT
GGGCCAGCTTTGCTGAGGGTAGATGTCCGGTCGTCCACACGATGTGCGAT
ATAGGAGGAGTAGGATGGAAGCCGGAGGCGGCATTGTAGTCAAGGGCCGC
GGTTGCGTGATTGAGAGGCATGGCTCTTCTCGTGGGACTTGGGGGTTGTA
TAAAGAACTTAAAACGTTGTGTATAAGAAGAAAAGGCAGCGATGCTCCTT
AGAGGGTTAGAGCTCAAGTTTGGATCTATGTTCCTGATTCTTGTGAACTA
TGGACAAGTCGCCCCTTCACGCTAGTTGTCCGACTCAGCTACAGCCGTGC
TTGGCTGCTCGCCACGTTATCCTCATACAATTGAAGTAAGGAAGAAAATA
AGCGAATGGAGACGCGGCAAACCAGGAAAGGGCCCTAAAAATGCTACTAA
ACA
back to top

Coding sequence (CDS) from alignment at CM002468.1:403630..405032-

>rna6388 ID=rna6388|Name=rna6388|organism=Nannochloropsis gaditana|type=CDS|length=816bp|location=Sequence derived from alignment at CM002468.1:403630..405032- (Nannochloropsis gaditana)
ATGCCATCCGTCGTTCACCTCCAAGGTCGATCTATCATGCCAACCTCTGA
CAACATCAAAACATACGAAAAAGAAGGTGGGATGGCTATTCTGGACCTGC
AAGAATCATTCGCACGTACTCTCGCAATTTTCGCTGCCATCTACGTCCTG
TGCATCGTTTCCGCGCTCCTCGCATTCCGCTTGTACGTCGTTCTCCCCAA
CCGCGTCACCAACGCACGCGTAACACCGCCCTCCGTCACGGAACAGCATG
TGCGAACTACACCAGCAGCTTTGCTCGTGGTTTTGGGTTCGGGAGGACAC
ACCAAGGAGATGCTGACGATGCTTCAGGGTCTGGAACCCCTGCGCTACCG
GCCCCTCGTCTTTGTCCGGGCCGAGTCAGATGCCCGCAGTGAAGGGATGG
TGAAGGCAGCACTTCCACCTCCCTCGGAGTTGCCATCTTCATCCGTCTCA
TTTTCCAAACCTGACTACGTTTTGACTGTACCTCGCTCCCGTTCCGTCGG
ACAGTCATGGCTTACCACCCCTCTGACGACGCTCCGGGCGCTCGCGGCCT
CCGTGGCCCTGGTTGCGCGACTGCAGCCCGACGTCATCCTCTGTAATGGC
CCTGGGACTTGCATCCCTATATGCGCAGCCGGTTATATCCTTCGATTTCT
GGGCGTGAAGCATGTGAAGATAATATTTGTCGAGTCTTTCTGTCGGGTGA
CAACCTTATCCTTGACTGGCAAGCTTCTTTACTGGGCGGCAGACAGATTC
CTGGTACAATGGCCGGGCCTGCGAGACAAATACCCTCAGGCCGAGTACCT
GGGCCAGCTTTGCTGA
back to top
Synonyms
Publications