EWM24296.1, cds6366 (CDS) Nannochloropsis gaditana

Overview
NameEWM24296.1
Unique Namecds6366
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:388746..390230 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24296.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100047g23.6059.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:388746..390230 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24296.1 vs. NCBI_GenBank
Match: gi|585105688|gb|EWM24296.1| (hypothetical protein Naga_100047g23 [Nannochloropsis gaditana])

HSP 1 Score: 1001.89 bits (2589), Expect = 0.000e+0
Identity = 494/494 (100.00%), Postives = 494/494 (100.00%), Query Frame = 0
Query:    1 MSGFYGNNPFDMLDSGVTGRPSGTQSESKPIPQATSQQQHAETLDDLINPFAVLGLDNDDKSSSTSLPHPQASGASCLPSQAPSATTCPPPQLVAPQPVAMLQALTPTSQSLQPRINPSSQSIFQPPAPIFTQQVYTPSVSPAFGSSPSSAYGQASPAYGSYSPTSPAFDSSLHTGELGYLSPSPSPVGSGGGAKVVTDADLTLFAGPSRSPTPAPASPTPITPHLQQGAPPATSEHVTDGWDNDDFGISWDAPEATSAETQPEKPEPAAPVEDRFRQGSAVESPYASQDKTLSPTEAAIAAEHKTEGTILARISVRTLIVKEWKDTFWTINKGKLLLYRSREDFLYNPVGVMVKKDIPLCDNLRCSEVTCKPYKGYGDLYHFTLEEMLDYGPSLVAKFASRRAKSVRELRAVIVAYIIAERKKRLRARRRSPGSPRVYSSSPYAQGGDYRQHQRSPTVGRTGPRTASPKAGSEASGASGAGGLDKYAKWGQIS 494
            MSGFYGNNPFDMLDSGVTGRPSGTQSESKPIPQATSQQQHAETLDDLINPFAVLGLDNDDKSSSTSLPHPQASGASCLPSQAPSATTCPPPQLVAPQPVAMLQALTPTSQSLQPRINPSSQSIFQPPAPIFTQQVYTPSVSPAFGSSPSSAYGQASPAYGSYSPTSPAFDSSLHTGELGYLSPSPSPVGSGGGAKVVTDADLTLFAGPSRSPTPAPASPTPITPHLQQGAPPATSEHVTDGWDNDDFGISWDAPEATSAETQPEKPEPAAPVEDRFRQGSAVESPYASQDKTLSPTEAAIAAEHKTEGTILARISVRTLIVKEWKDTFWTINKGKLLLYRSREDFLYNPVGVMVKKDIPLCDNLRCSEVTCKPYKGYGDLYHFTLEEMLDYGPSLVAKFASRRAKSVRELRAVIVAYIIAERKKRLRARRRSPGSPRVYSSSPYAQGGDYRQHQRSPTVGRTGPRTASPKAGSEASGASGAGGLDKYAKWGQIS
Sbjct:    1 MSGFYGNNPFDMLDSGVTGRPSGTQSESKPIPQATSQQQHAETLDDLINPFAVLGLDNDDKSSSTSLPHPQASGASCLPSQAPSATTCPPPQLVAPQPVAMLQALTPTSQSLQPRINPSSQSIFQPPAPIFTQQVYTPSVSPAFGSSPSSAYGQASPAYGSYSPTSPAFDSSLHTGELGYLSPSPSPVGSGGGAKVVTDADLTLFAGPSRSPTPAPASPTPITPHLQQGAPPATSEHVTDGWDNDDFGISWDAPEATSAETQPEKPEPAAPVEDRFRQGSAVESPYASQDKTLSPTEAAIAAEHKTEGTILARISVRTLIVKEWKDTFWTINKGKLLLYRSREDFLYNPVGVMVKKDIPLCDNLRCSEVTCKPYKGYGDLYHFTLEEMLDYGPSLVAKFASRRAKSVRELRAVIVAYIIAERKKRLRARRRSPGSPRVYSSSPYAQGGDYRQHQRSPTVGRTGPRTASPKAGSEASGASGAGGLDKYAKWGQIS 494          
BLAST of EWM24296.1 vs. NCBI_GenBank
Match: gi|299115769|emb|CBN74334.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 119.398 bits (298), Expect = 3.383e-25
Identity = 61/130 (46.92%), Postives = 82/130 (63.08%), Query Frame = 0
Query:  301 AAEHKTEGTILARISVRTLIVKEWKDTFWTINK-GKLLLYRSREDFLYNPVGVMVKKDIPLCDNLRCSEVTCKPYKGYGDLYHFTLEEMLDYGPSLVAKFASRRAKSVRELRAVIVAYIIAERKKRLRAR 429
            AA  K +G   ARISVRTL+VK+WK T++       LLLYRSR+D +YNP G M+KK + +  N   + +  K YK +G L+HFTLEE +DYGPS+VAKFA    + + +L   +   I    K+RLR R
Sbjct:  369 AAGGKADGECFARISVRTLLVKKWKTTYFIFELPDLLLLYRSRDDHMYNPRGTMIKKRVEVKHNHTLTRLKRKVYKEHGYLWHFTLEEQMDYGPSIVAKFAHHERRVLEDLGQRLAEAI--REKRRLRQR 496          
BLAST of EWM24296.1 vs. NCBI_GenBank
Match: gi|219117934|ref|XP_002179752.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408805|gb|EEC48738.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 87.0409 bits (214), Expect = 2.141e-14
Identity = 54/167 (32.34%), Postives = 82/167 (49.10%), Query Frame = 0
Query:  305 KTEGTILARISVRTLIVKEWKDTFWT-INKGKLLLYRSREDF---LYNPV------GVMVKKDIPLCD-----NLRCSEVTCKPYKGYGD--LYHFTLEEMLDYGPSLVAKFASRRAKSVRELRAVIVAYIIAERKKRLRARRRSPGSPRVYSSSPYAQGGDYRQHQ 454
            + +G +L+RIS RT+++K+WK +FW       +L +R++ DF   L NP         M+K  +         N+R  +VT    KGYG+  +  F LE  +DYGP++ A F S   K V  LR  +V  +   R   L    R+ G+ R   + P+   G  R HQ
Sbjct:  313 RKKGFVLSRISFRTIVMKKWKQSFWVQYGPHTMLWFRTQADFDDWLNNPYHNQQQRNFMIKLAVNFVHDLYKPNVRGYQVTQCRTKGYGNKLVRQFKLERWMDYGPTIAAAFGSYDPKEVDALREALVECM---RNTPLSGGIRATGAVRQDYAEPHDDNGYDRHHQ 476          
BLAST of EWM24296.1 vs. NCBI_GenBank
Match: gi|1210516866|dbj|GAX24355.1| (hypothetical protein FisN_4Lh477 [Fistulifera solaris])

HSP 1 Score: 81.2629 bits (199), Expect = 1.195e-12
Identity = 47/129 (36.43%), Postives = 66/129 (51.16%), Query Frame = 0
Query:  305 KTEGTILARISVRTLIVKEWKDTFWTINKG--KLLLYRSREDF---LYNPV------GVMVKKDIPLCD-----NLRCSEVTCKPYKGYGD--LYHFTLEEMLDYGPSLVAKFASRRAKSVRELRAVIV 415
            +  G +LARIS RT+++K+WK  FW I  G   +L +RS  DF   L NP         ++K  +         N+R  +VT    K YG+  +  F LE  +DYGP++ A F S   K V ELR  +V
Sbjct:  318 QKRGYVLARISFRTIVIKKWKQVFW-IRYGPHTMLFFRSEADFDDWLNNPYHDQTQRNFLIKLAVNFVHDLYKPNVRGYQVTQCRTKAYGNKMVRQFKLERWMDYGPTIAAAFGSYNPKEVDELREALV 445          
BLAST of EWM24296.1 vs. NCBI_GenBank
Match: gi|1210515063|dbj|GAX26026.1| (hypothetical protein FisN_4Hh477 [Fistulifera solaris])

HSP 1 Score: 80.1073 bits (196), Expect = 2.990e-12
Identity = 46/129 (35.66%), Postives = 66/129 (51.16%), Query Frame = 0
Query:  305 KTEGTILARISVRTLIVKEWKDTFWTINKG--KLLLYRSREDF---LYNPV------GVMVKKDIPLCD-----NLRCSEVTCKPYKGYGD--LYHFTLEEMLDYGPSLVAKFASRRAKSVRELRAVIV 415
            +  G +LARIS RT+++K+WK  FW I  G   +L +RS  DF   L NP         ++K  +         N+R  +VT    K YG+  +  F LE  +DYGP++ A F S   K V +LR  +V
Sbjct:  312 QKRGYVLARISFRTIVIKKWKQVFW-IRYGPHTMLFFRSEADFDDWLNNPYHDQTQRNFLIKLAVNFVHDLYKPNVRGYQVTQCRTKAYGNKMVRQFKLERWMDYGPTIAAAFGSYNPKEVDDLREALV 439          
BLAST of EWM24296.1 vs. NCBI_GenBank
Match: gi|585106714|gb|EWM25077.1| (hypothetical protein Naga_100098g16 [Nannochloropsis gaditana])

HSP 1 Score: 73.9442 bits (180), Expect = 1.875e-10
Identity = 68/249 (27.31%), Postives = 115/249 (46.18%), Query Frame = 0
Query:  218 SPTPITPHLQQGAP--PATSEHVTDGWDNDDFGISWDAPEATSAETQPEKPEPAAPVEDRFRQGSAVESPYASQDKTLSPTEAAIAAEHKTEGTILARISVRTLIVKEWKDTFWTINKGKLLLYRSR-----EDFLYNPVGVMVKKDIPLCDNLRCSEVTCKPYKGYG-DLYHFTLEEMLDYG-PSLVAKFASRRAKSVRELRAVIVAYIIAERKKRLRARRRSPGSPRVYSSSPYAQGGDYRQHQRSP 457
            +P+P+TP      P  P T +   D    D + I W+ P  T A +         PV+ +    +      +S +   SP+   +  +   +G +LAR+S R++I +EWK  +W I   +L +YRS+      D++ +P    +KK IPL ++L+ + +  K Y G    LY F +E + + G  +++AKFA           A +   ++    K L A +R  G  R   S  +     YR+H R+P
Sbjct:  173 APSPLTPTSMPALPSVPQTRDSALD----DSWSIEWEPPHPTRAVSDSVLRNEPKPVK-KLAASTPASMLSSSSEGFGSPSTFCMPVQIP-DGVVLARVSARSIIGREWKPVYWVIVNRRLWIYRSKADYYPTDYIKDPFNKRIKKCIPLRESLQLTCIKNKLYPGEKRTLYTFGMESIEEGGKKTMIAKFA-----------AYVHNDLVIAVSKSLFATQR--GHLRCLVSKRF-----YREHARTP 397          
The following BLAST results are available for this feature:
BLAST of EWM24296.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585105688|gb|EWM24296.1|0.000e+0100.00hypothetical protein Naga_100047g23 [Nannochlorops... [more]
gi|299115769|emb|CBN74334.1|3.383e-2546.92conserved unknown protein [Ectocarpus siliculosus][more]
gi|219117934|ref|XP_002179752.1|2.141e-1432.34predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210516866|dbj|GAX24355.1|1.195e-1236.43hypothetical protein FisN_4Lh477 [Fistulifera sola... [more]
gi|1210515063|dbj|GAX26026.1|2.990e-1235.66hypothetical protein FisN_4Hh477 [Fistulifera sola... [more]
gi|585106714|gb|EWM25077.1|1.875e-1027.31hypothetical protein Naga_100098g16 [Nannochlorops... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6381rna6381Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications