EWM24296.1, cds6366 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM24296.1 vs. NCBI_GenBank
Match: gi|585105688|gb|EWM24296.1| (hypothetical protein Naga_100047g23 [Nannochloropsis gaditana]) HSP 1 Score: 1001.89 bits (2589), Expect = 0.000e+0 Identity = 494/494 (100.00%), Postives = 494/494 (100.00%), Query Frame = 0 Query: 1 MSGFYGNNPFDMLDSGVTGRPSGTQSESKPIPQATSQQQHAETLDDLINPFAVLGLDNDDKSSSTSLPHPQASGASCLPSQAPSATTCPPPQLVAPQPVAMLQALTPTSQSLQPRINPSSQSIFQPPAPIFTQQVYTPSVSPAFGSSPSSAYGQASPAYGSYSPTSPAFDSSLHTGELGYLSPSPSPVGSGGGAKVVTDADLTLFAGPSRSPTPAPASPTPITPHLQQGAPPATSEHVTDGWDNDDFGISWDAPEATSAETQPEKPEPAAPVEDRFRQGSAVESPYASQDKTLSPTEAAIAAEHKTEGTILARISVRTLIVKEWKDTFWTINKGKLLLYRSREDFLYNPVGVMVKKDIPLCDNLRCSEVTCKPYKGYGDLYHFTLEEMLDYGPSLVAKFASRRAKSVRELRAVIVAYIIAERKKRLRARRRSPGSPRVYSSSPYAQGGDYRQHQRSPTVGRTGPRTASPKAGSEASGASGAGGLDKYAKWGQIS 494 MSGFYGNNPFDMLDSGVTGRPSGTQSESKPIPQATSQQQHAETLDDLINPFAVLGLDNDDKSSSTSLPHPQASGASCLPSQAPSATTCPPPQLVAPQPVAMLQALTPTSQSLQPRINPSSQSIFQPPAPIFTQQVYTPSVSPAFGSSPSSAYGQASPAYGSYSPTSPAFDSSLHTGELGYLSPSPSPVGSGGGAKVVTDADLTLFAGPSRSPTPAPASPTPITPHLQQGAPPATSEHVTDGWDNDDFGISWDAPEATSAETQPEKPEPAAPVEDRFRQGSAVESPYASQDKTLSPTEAAIAAEHKTEGTILARISVRTLIVKEWKDTFWTINKGKLLLYRSREDFLYNPVGVMVKKDIPLCDNLRCSEVTCKPYKGYGDLYHFTLEEMLDYGPSLVAKFASRRAKSVRELRAVIVAYIIAERKKRLRARRRSPGSPRVYSSSPYAQGGDYRQHQRSPTVGRTGPRTASPKAGSEASGASGAGGLDKYAKWGQIS Sbjct: 1 MSGFYGNNPFDMLDSGVTGRPSGTQSESKPIPQATSQQQHAETLDDLINPFAVLGLDNDDKSSSTSLPHPQASGASCLPSQAPSATTCPPPQLVAPQPVAMLQALTPTSQSLQPRINPSSQSIFQPPAPIFTQQVYTPSVSPAFGSSPSSAYGQASPAYGSYSPTSPAFDSSLHTGELGYLSPSPSPVGSGGGAKVVTDADLTLFAGPSRSPTPAPASPTPITPHLQQGAPPATSEHVTDGWDNDDFGISWDAPEATSAETQPEKPEPAAPVEDRFRQGSAVESPYASQDKTLSPTEAAIAAEHKTEGTILARISVRTLIVKEWKDTFWTINKGKLLLYRSREDFLYNPVGVMVKKDIPLCDNLRCSEVTCKPYKGYGDLYHFTLEEMLDYGPSLVAKFASRRAKSVRELRAVIVAYIIAERKKRLRARRRSPGSPRVYSSSPYAQGGDYRQHQRSPTVGRTGPRTASPKAGSEASGASGAGGLDKYAKWGQIS 494
BLAST of EWM24296.1 vs. NCBI_GenBank
Match: gi|299115769|emb|CBN74334.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 119.398 bits (298), Expect = 3.383e-25 Identity = 61/130 (46.92%), Postives = 82/130 (63.08%), Query Frame = 0 Query: 301 AAEHKTEGTILARISVRTLIVKEWKDTFWTINK-GKLLLYRSREDFLYNPVGVMVKKDIPLCDNLRCSEVTCKPYKGYGDLYHFTLEEMLDYGPSLVAKFASRRAKSVRELRAVIVAYIIAERKKRLRAR 429 AA K +G ARISVRTL+VK+WK T++ LLLYRSR+D +YNP G M+KK + + N + + K YK +G L+HFTLEE +DYGPS+VAKFA + + +L + I K+RLR R Sbjct: 369 AAGGKADGECFARISVRTLLVKKWKTTYFIFELPDLLLLYRSRDDHMYNPRGTMIKKRVEVKHNHTLTRLKRKVYKEHGYLWHFTLEEQMDYGPSIVAKFAHHERRVLEDLGQRLAEAI--REKRRLRQR 496
BLAST of EWM24296.1 vs. NCBI_GenBank
Match: gi|219117934|ref|XP_002179752.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408805|gb|EEC48738.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 87.0409 bits (214), Expect = 2.141e-14 Identity = 54/167 (32.34%), Postives = 82/167 (49.10%), Query Frame = 0 Query: 305 KTEGTILARISVRTLIVKEWKDTFWT-INKGKLLLYRSREDF---LYNPV------GVMVKKDIPLCD-----NLRCSEVTCKPYKGYGD--LYHFTLEEMLDYGPSLVAKFASRRAKSVRELRAVIVAYIIAERKKRLRARRRSPGSPRVYSSSPYAQGGDYRQHQ 454 + +G +L+RIS RT+++K+WK +FW +L +R++ DF L NP M+K + N+R +VT KGYG+ + F LE +DYGP++ A F S K V LR +V + R L R+ G+ R + P+ G R HQ Sbjct: 313 RKKGFVLSRISFRTIVMKKWKQSFWVQYGPHTMLWFRTQADFDDWLNNPYHNQQQRNFMIKLAVNFVHDLYKPNVRGYQVTQCRTKGYGNKLVRQFKLERWMDYGPTIAAAFGSYDPKEVDALREALVECM---RNTPLSGGIRATGAVRQDYAEPHDDNGYDRHHQ 476
BLAST of EWM24296.1 vs. NCBI_GenBank
Match: gi|1210516866|dbj|GAX24355.1| (hypothetical protein FisN_4Lh477 [Fistulifera solaris]) HSP 1 Score: 81.2629 bits (199), Expect = 1.195e-12 Identity = 47/129 (36.43%), Postives = 66/129 (51.16%), Query Frame = 0 Query: 305 KTEGTILARISVRTLIVKEWKDTFWTINKG--KLLLYRSREDF---LYNPV------GVMVKKDIPLCD-----NLRCSEVTCKPYKGYGD--LYHFTLEEMLDYGPSLVAKFASRRAKSVRELRAVIV 415 + G +LARIS RT+++K+WK FW I G +L +RS DF L NP ++K + N+R +VT K YG+ + F LE +DYGP++ A F S K V ELR +V Sbjct: 318 QKRGYVLARISFRTIVIKKWKQVFW-IRYGPHTMLFFRSEADFDDWLNNPYHDQTQRNFLIKLAVNFVHDLYKPNVRGYQVTQCRTKAYGNKMVRQFKLERWMDYGPTIAAAFGSYNPKEVDELREALV 445
BLAST of EWM24296.1 vs. NCBI_GenBank
Match: gi|1210515063|dbj|GAX26026.1| (hypothetical protein FisN_4Hh477 [Fistulifera solaris]) HSP 1 Score: 80.1073 bits (196), Expect = 2.990e-12 Identity = 46/129 (35.66%), Postives = 66/129 (51.16%), Query Frame = 0 Query: 305 KTEGTILARISVRTLIVKEWKDTFWTINKG--KLLLYRSREDF---LYNPV------GVMVKKDIPLCD-----NLRCSEVTCKPYKGYGD--LYHFTLEEMLDYGPSLVAKFASRRAKSVRELRAVIV 415 + G +LARIS RT+++K+WK FW I G +L +RS DF L NP ++K + N+R +VT K YG+ + F LE +DYGP++ A F S K V +LR +V Sbjct: 312 QKRGYVLARISFRTIVIKKWKQVFW-IRYGPHTMLFFRSEADFDDWLNNPYHDQTQRNFLIKLAVNFVHDLYKPNVRGYQVTQCRTKAYGNKMVRQFKLERWMDYGPTIAAAFGSYNPKEVDDLREALV 439
BLAST of EWM24296.1 vs. NCBI_GenBank
Match: gi|585106714|gb|EWM25077.1| (hypothetical protein Naga_100098g16 [Nannochloropsis gaditana]) HSP 1 Score: 73.9442 bits (180), Expect = 1.875e-10 Identity = 68/249 (27.31%), Postives = 115/249 (46.18%), Query Frame = 0 Query: 218 SPTPITPHLQQGAP--PATSEHVTDGWDNDDFGISWDAPEATSAETQPEKPEPAAPVEDRFRQGSAVESPYASQDKTLSPTEAAIAAEHKTEGTILARISVRTLIVKEWKDTFWTINKGKLLLYRSR-----EDFLYNPVGVMVKKDIPLCDNLRCSEVTCKPYKGYG-DLYHFTLEEMLDYG-PSLVAKFASRRAKSVRELRAVIVAYIIAERKKRLRARRRSPGSPRVYSSSPYAQGGDYRQHQRSP 457 +P+P+TP P P T + D D + I W+ P T A + PV+ + + +S + SP+ + + +G +LAR+S R++I +EWK +W I +L +YRS+ D++ +P +KK IPL ++L+ + + K Y G LY F +E + + G +++AKFA A + ++ K L A +R G R S + YR+H R+P Sbjct: 173 APSPLTPTSMPALPSVPQTRDSALD----DSWSIEWEPPHPTRAVSDSVLRNEPKPVK-KLAASTPASMLSSSSEGFGSPSTFCMPVQIP-DGVVLARVSARSIIGREWKPVYWVIVNRRLWIYRSKADYYPTDYIKDPFNKRIKKCIPLRESLQLTCIKNKLYPGEKRTLYTFGMESIEEGGKKTMIAKFA-----------AYVHNDLVIAVSKSLFATQR--GHLRCLVSKRF-----YREHARTP 397 The following BLAST results are available for this feature:
BLAST of EWM24296.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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