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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100047g23.6059.mrna |
| Orig protein id | gnl|cribi|Naga_100047g23.6059 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:388124..390698 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6381 ID=rna6381|Name=rna6381|organism=Nannochloropsis gaditana|type=mRNA|length=1463bp
CCGGGCTCTCACCTCGTAACTCCCCCAACGACGAGCGACTGCCTGATCGC
TCTCCTTTGTCTTGCAAGAAGTTGCATGTCATGGTTTTGGATTTCTCACT
TTGCGGAGACAGCGCCGCAGTGGTACCACACTGTTTAAGGATTACTTTAC
GTGCAAAGGTTTTGCGTATCGTAACACTTGACCTGTTTCCACAACTTTTG
CAGGCTCTCCCCCAAGGCTTGAATCCCATTTTTAACCGCTGCTGGTTGTT
AACTTCCAGTGATCATATCAGAAAACCATAAGCGCATAATTCAGTCAATA
TCGTGGACATGTCATCGTACGAGAATTTGTCTCCACAAGTCATCACGCGA
ATTGCCCGTGAAATTCAGGATCTGGTGCGAAAGCCCTCGCCTGGCATTCG
GCTGGCGCAAAACAATTGCGACAACATCGCAGAGGTCCACGCAGAGATCG
ATGGTCCCGAAGACACACCATATGTCGACGGGACTTTCCATGTGAAACTC
GTGCTCAGTCAAGATTTTCCAAACTCGCCTCCTCGCGGGTACTTCTTGAC
CAGGATCTACCACCCAAACGTGAGCAGTGCCGGTGACATCTGTGTGAACA
CCTTAAAGCGGGACTGGTCACCCTCTGTTACATTGGCCCACGTCCTGCAA
GTCATCCGCTGTCTGTTGATTGTGCCCTTCCCCGAGTCTTCTTTGAACGA
TGAGGCGGGAAAGCAATTCATGGAGTCGTACGCAGACTACGCCAGGCGGG
CGCGCTTGCTGACATCAGTCCATGCAAGGAGAAAGGTTAATGGGAGCAGT
GAGAACATGATTCGAAGCGCTTCAAGAGATAGCATGAGCCTAGAAAAGGA
AGTAAAACTGGTGGAGGGAGAGGATGCGGCGGATGGTTTCAGCAAGAAGA
GCGTTGAAGAAAGTATGGGCGAGGGGGAGACCAAAGGAGTCCTTGGGTCG
CCCAATCTGCCGGGGCTAATGAAGAGGAAAGGGGACCCCAATCAAAAGGA
AGCCGCCTCCTCCATGGACAAACGGTTGAAGAAGAAGGGTCTCAAGAGGC
TTTGATGGAGGATGTTTCTACATACGTGTGAGTTAGAAGTTTGCGACGGG
TAGTCCTCGATGGATGACGTGGAGGGAGGGGGGATAGAATTAGGCAGTGT
GTGATGGTGTCTGTCGCGTTCCCAATCTGGACAGTCGGGATTTCTGCGCC
ACAAGATTAGAAAACGACGACAGATACACCAGAAGGCACACGAAATGGAA
GCGCCTCTCAAGGGAAGGGTGTCCTGGACTTCCGTTTTTTGGTTTTATTG
TCATGTATGTATATAAGTGCAGCAACTGCGTCAAATGGGACGAGATGATG
CGATCTCGGGTATTTATAAGGTCGAATTCCTTTAAATCTTTAACAACCAC
CTGGTAGGCTTTTTGAAATTAAAGAAAAAGAAAAAAAGAATGCATTCGCC
ATGTGATACCAAT back to topprotein sequence of rna6381 >rna6381-protein ID=rna6381-protein|Name=rna6381|organism=Nannochloropsis gaditana|type=polypeptide|length=494bp
MSGFYGNNPFDMLDSGVTGRPSGTQSESKPIPQATSQQQHAETLDDLINP
FAVLGLDNDDKSSSTSLPHPQASGASCLPSQAPSATTCPPPQLVAPQPVA
MLQALTPTSQSLQPRINPSSQSIFQPPAPIFTQQVYTPSVSPAFGSSPSS
AYGQASPAYGSYSPTSPAFDSSLHTGELGYLSPSPSPVGSGGGAKVVTDA
DLTLFAGPSRSPTPAPASPTPITPHLQQGAPPATSEHVTDGWDNDDFGIS
WDAPEATSAETQPEKPEPAAPVEDRFRQGSAVESPYASQDKTLSPTEAAI
AAEHKTEGTILARISVRTLIVKEWKDTFWTINKGKLLLYRSREDFLYNPV
GVMVKKDIPLCDNLRCSEVTCKPYKGYGDLYHFTLEEMLDYGPSLVAKFA
SRRAKSVRELRAVIVAYIIAERKKRLRARRRSPGSPRVYSSSPYAQGGDY
RQHQRSPTVGRTGPRTASPKAGSEASGASGAGGLDKYAKWGQIS back to topmRNA from alignment at CM002468.1:388124..390698+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6381 ID=rna6381|Name=rna6381|organism=Nannochloropsis gaditana|type=mRNA|length=2575bp|location=Sequence derived from alignment at CM002468.1:388124..390698+ (Nannochloropsis gaditana)
ccgcgctgACTTCCTTATTGAATGTCCCGTTAATTTTACCAGAAGagact
ttttttttcccttgtgATTTTCTAacagagaaagaaaaaatagACTACAT
ATTCCTTGTCGACATTCATACATGTTCCAATGAGTGTGCAATGAAGTTCA
GAAAACATAGGCATCTGTCGTGAGGGATCGTCCCtcgcggcttcctccac
acGCTTCCATTGACATTGCTCTCACGCATGGTTGAGGTTTTGGAACTGTA
CTTACATTATCGCGTGGGAATACAATTCTCTTATATTTTTTAAATTTAGC
GCAAGGTGATGTTAAAAGTCAACAGTGTCTTCTTTGCGTAGATTACTCCA
CGGGGTGGTACTCAGATCTCCGAGGTGGCAGCGCCTCAATTACCAGCCCA
AAAGCACAGAATGACCCCTGTATGATTCACTCCCTCGTGCAAGTCCTTGA
AATGTTAATTATGTGCGACTGATCCCTTTAAGTGTATGATTTTTGATATT
TATCCTCCCTTTTACCAGTTATTGAGACCTTTTAAGCACTGAACGGTTTC
CCTCGTTTTCAGCCTGAAGACCAAACGTTAAGTTGATTGACCTTTTTTCC
CCTGTCACAGCTAGCGTGAGCTATGAGCGGGTTTTACGGTAATAATCCTT
TCGACATGCTGGACAGCGGCGTGACCGGCAGGCCTTCAGGTACTCAGTCT
GAAAGCAAGCCTATCCCGCAAGCTACCTCGCAGCAACAACACGCGGAGAC
TTTAGACGATCTCATCAATCCTTTCGCAGTGCTCGGTTTAGACAATGATG
ACAAGTCTTCCTCGACTTCGCTTCCTCATCCCCAGGCCTCGGGCGCGAGC
TGCCTTCCTTCACAGGCTCCGAGCGCCACaacgtgcccccccccccagct
cGTCGCACCCCAGCCTGTGGCCATGCTCCAAGCGCTCACACCCACTAGTC
AATCATTGCAGCCCCGGATTAATCCCTCCAGCCAATCCATATTTCAGCCG
CCAGCGCCTATTTTCACGCAACAAGTTTACACACCCTCGGTGAGCCCTGC
CTTCGGGAGCAGTCCGTCCTCTGCCTATGGACAAGCGAGCCCCGCCTACG
GTTCTTACTCCCCGACCAGCCCCGCTTTTGACAGCAGCCTACACACGGGA
GAACTCGGCtacctttctccctcgccgtccccTGTaggaagcggcggggg
cgCCAAGGTTGTTACAGACGCCGACTTGACCCTCTTCGCCGGGCCCTCGC
GCTCTCCCACGCCAGCACCCGCCAGCCCGACTCCCATCACGCCCCACTTG
CAGCAGGGAGCACCCCCAGCAACAAGCGAGCACGTCACTGATGGATGGGA
CAACGACGATTTCGGGATCTCCTGGGATGCACCCGAAGCGACGTCGGCGG
AGACGCAGCCTGAGAAGCCCGAGCCCGCAGCCCCCGTGGAAGACCGATTC
CGGCAAGGATCTGCGGTGGAGTCCCCCTATGCAAGCCAGGACAAGACGCT
GAGCCCCACGGAGGCAGCGATCGCGGCGGAGCACAAGACGGAGGGGACCA
TCCTGGCCCGCATTTCCGTGCGTACCCTGATCGTGAAGGAGTGGAAAGAC
ACCTTCTGGACCATCAACAAGGGgaagctcctcctctaccgCTCCCGCGA
AGACTTTTTGTACAACCCTGTTGGGGTAATGGTCAAGAAGGATATCCCCC
TCTGCGACAATCTGCGGTGTTCGGAGGTGACGTGCAAGCCCTATAAGGGC
TACGGGGACCTCTACCACTTCACCCTGGAGGAAATGCTGGACTACGGCCC
CTCCCTGGTCGCCAAGTTCGCCTCCAGGCGCGCCAAGAGCGTCCGGGAGC
TCCGTGCCGTCATTGTAGCCTACATCATTGCGGAGCGGAAGAAGCGGCTC
CGGGCAAGGCGACGATCGCCCGGCAGTCCGCGAGTCTATAGTAGCTCTCC
CTacgcgcagggaggggactACCGACAACATCAACGCTCTCCCACAGTCG
GACGGACGGGTCCTCGAACGGCGAGTCCCAAGGCGGGAAGCGAAGCTTCA
GGTGCCTCGGGTGCGGGAGGCTTGGATAAGTACGCGAAGTGGGGCCAGAT
TAGTTGAAAGAAGGGCCGGGACAAAGGCTCTTaagagggcaggagagggg
gcgtGTAAGCTCCAAATTTGAGTGACGACAGCAAGGAAATCATTACAAGC
GTTCATTTTAGGATTATAGAAAAATCTTGAAGACAAAGAAACTCCTCTAC
ATTGTCAATAAAGCCATTGCGAAAAGAGGTCGAGAAGCGCGTATTAGAGG
GACCCCTGAAAGGCTGTATCAGGAACGCATGTCCTCACGCTTGCGACAAG
ATTTCATGTATAGTAGCGGACCAATACAACGACCATCAAACAGAAGATAG
AATGCATTTGAGGGAAGTCGAGATCGTGAGAGGTTCGACGAACACACCGA
CAGACTAGATTGTCCATGTATTTTTTTCGCGTGAATGAAGAGACAGACAT
TGAGAGCTTCTGGTCTGGTCGGTTTTTGTTGCAGATTTTTTTCAAACAAA
GAAAGTAGATACGAATGTACATATA back to topCoding sequence (CDS) from alignment at CM002468.1:388124..390698+ >rna6381 ID=rna6381|Name=rna6381|organism=Nannochloropsis gaditana|type=CDS|length=1485bp|location=Sequence derived from alignment at CM002468.1:388124..390698+ (Nannochloropsis gaditana)
ATGAGCGGGTTTTACGGTAATAATCCTTTCGACATGCTGGACAGCGGCGT
GACCGGCAGGCCTTCAGGTACTCAGTCTGAAAGCAAGCCTATCCCGCAAG
CTACCTCGCAGCAACAACACGCGGAGACTTTAGACGATCTCATCAATCCT
TTCGCAGTGCTCGGTTTAGACAATGATGACAAGTCTTCCTCGACTTCGCT
TCCTCATCCCCAGGCCTCGGGCGCGAGCTGCCTTCCTTCACAGGCTCCGA
GCGCCACaacgtgcccccccccccagctcGTCGCACCCCAGCCTGTGGCC
ATGCTCCAAGCGCTCACACCCACTAGTCAATCATTGCAGCCCCGGATTAA
TCCCTCCAGCCAATCCATATTTCAGCCGCCAGCGCCTATTTTCACGCAAC
AAGTTTACACACCCTCGGTGAGCCCTGCCTTCGGGAGCAGTCCGTCCTCT
GCCTATGGACAAGCGAGCCCCGCCTACGGTTCTTACTCCCCGACCAGCCC
CGCTTTTGACAGCAGCCTACACACGGGAGAACTCGGCtacctttctccct
cgccgtccccTGTaggaagcggcgggggcgCCAAGGTTGTTACAGACGCC
GACTTGACCCTCTTCGCCGGGCCCTCGCGCTCTCCCACGCCAGCACCCGC
CAGCCCGACTCCCATCACGCCCCACTTGCAGCAGGGAGCACCCCCAGCAA
CAAGCGAGCACGTCACTGATGGATGGGACAACGACGATTTCGGGATCTCC
TGGGATGCACCCGAAGCGACGTCGGCGGAGACGCAGCCTGAGAAGCCCGA
GCCCGCAGCCCCCGTGGAAGACCGATTCCGGCAAGGATCTGCGGTGGAGT
CCCCCTATGCAAGCCAGGACAAGACGCTGAGCCCCACGGAGGCAGCGATC
GCGGCGGAGCACAAGACGGAGGGGACCATCCTGGCCCGCATTTCCGTGCG
TACCCTGATCGTGAAGGAGTGGAAAGACACCTTCTGGACCATCAACAAGG
GgaagctcctcctctaccgCTCCCGCGAAGACTTTTTGTACAACCCTGTT
GGGGTAATGGTCAAGAAGGATATCCCCCTCTGCGACAATCTGCGGTGTTC
GGAGGTGACGTGCAAGCCCTATAAGGGCTACGGGGACCTCTACCACTTCA
CCCTGGAGGAAATGCTGGACTACGGCCCCTCCCTGGTCGCCAAGTTCGCC
TCCAGGCGCGCCAAGAGCGTCCGGGAGCTCCGTGCCGTCATTGTAGCCTA
CATCATTGCGGAGCGGAAGAAGCGGCTCCGGGCAAGGCGACGATCGCCCG
GCAGTCCGCGAGTCTATAGTAGCTCTCCCTacgcgcagggaggggactAC
CGACAACATCAACGCTCTCCCACAGTCGGACGGACGGGTCCTCGAACGGC
GAGTCCCAAGGCGGGAAGCGAAGCTTCAGGTGCCTCGGGTGCGGGAGGCT
TGGATAAGTACGCGAAGTGGGGCCAGATTAGTTGA back to top
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