EWM24330.1, cds6343 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24330.1 vs. NCBI_GenBank
Match: gi|585105723|gb|EWM24330.1| (80 kda mcm3-associated protein [Nannochloropsis gaditana]) HSP 1 Score: 664.455 bits (1713), Expect = 0.000e+0 Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0
Query: 1 MCPPDEVALRESTRNKLEDRPGLSPALTMIKDLERNPPADYPTAKIRPLEWLLRSVEYMEDELMDKGRSGRVGGGEGEVLDGDRSWGQVTALENYKFHFQRLRMVAKELIMQNFSYGGNISTTSIEIVERLTRYWIIFQHHLNANEDFVRDDGKQNTEQLTNTLVPLQENYKYAHMLGQPALCAHEAEFQAYGVLLTGDLKQALKGGVGVSRSPEVRLAVDVLTCVETDNFARFFSLLRRAPYLPGCLMAKYVERMREKALEVWGRAYNPTKARGTAFRTADVLRALCMQDEDELKALAVSRPWVVVDGDRPASLPRLFA 320
MCPPDEVALRESTRNKLEDRPGLSPALTMIKDLERNPPADYPTAKIRPLEWLLRSVEYMEDELMDKGRSGRVGGGEGEVLDGDRSWGQVTALENYKFHFQRLRMVAKELIMQNFSYGGNISTTSIEIVERLTRYWIIFQHHLNANEDFVRDDGKQNTEQLTNTLVPLQENYKYAHMLGQPALCAHEAEFQAYGVLLTGDLKQALKGGVGVSRSPEVRLAVDVLTCVETDNFARFFSLLRRAPYLPGCLMAKYVERMREKALEVWGRAYNPTKARGTAFRTADVLRALCMQDEDELKALAVSRPWVVVDGDRPASLPRLFA
Sbjct: 1 MCPPDEVALRESTRNKLEDRPGLSPALTMIKDLERNPPADYPTAKIRPLEWLLRSVEYMEDELMDKGRSGRVGGGEGEVLDGDRSWGQVTALENYKFHFQRLRMVAKELIMQNFSYGGNISTTSIEIVERLTRYWIIFQHHLNANEDFVRDDGKQNTEQLTNTLVPLQENYKYAHMLGQPALCAHEAEFQAYGVLLTGDLKQALKGGVGVSRSPEVRLAVDVLTCVETDNFARFFSLLRRAPYLPGCLMAKYVERMREKALEVWGRAYNPTKARGTAFRTADVLRALCMQDEDELKALAVSRPWVVVDGDRPASLPRLFA 320
BLAST of EWM24330.1 vs. NCBI_GenBank
Match: gi|953492816|emb|CEG44762.1| (Nuclear protein export factor [Plasmopara halstedii]) HSP 1 Score: 130.183 bits (326), Expect = 8.039e-30 Identity = 101/311 (32.48%), Postives = 154/311 (49.52%), Query Frame = 0
Query: 5 DEVALRESTRNKLEDRPGLSPALTMIKDLERNPPADYP---TAKIRPLEWLLRSVEYMEDELMDKGRSGRVGGGEGEVLDGDRSWGQV-TALENYKFHFQRLRMVAKELIMQNF-SYGGNISTTSIEIVERLTRYWIIFQHHLNANEDFVRDDGKQNTEQLTNTLVPLQENYKYAHMLGQPALCA-HEAEFQAYGVLLTGD-------LKQALKGGVGVSRSPEVRLAVDVLTCVETDNFARFFSLLRRAPYLPGCLMAKYVERMREKALEVWGRAYNPTKARGTAFRTADVLRALCMQDEDELKALAVSR 302
DE+++ E + DRPG + +IK +R+ AD+ + +IRP L R+ Y+E +MD + G +D +V +E Y F + R RM+ K+ ++QN+ GG + +++ ER+ RY I+ +H L FV +QN EQL TL L E Y +H + PA C+ EAEF+AY +L T D LK V + S + A+ V T ++ +FFSLLR+A YL CL+ +Y+ +R AL RAY R ++ D++ LC D D A +V R
Sbjct: 440 DELSVFEKS---FPDRPGTERDM-IIKRFQRSS-ADHKLDISEEIRPPGVLRRTQLYIEQAIMDLDQCG---------IDPRFQTPRVPEPIELYNFCWDRFRMIRKDFVLQNYRGAGGRVHPIVLDVHERIARYHILSEHELIETPSFV---AQQNMEQLGQTLKSLNELYDESHKISNPAYCSPFEAEFRAYFILCTLDNGRGMDVLKYVKNLPVHIMESVHLNFAMRVFVARHTGDYYQFFSLLRQATYLQSCLLFRYISNVRSSALLRMNRAY-----RSQSYPLEDLVEQLCFDDIDH--AYSVCR 726
BLAST of EWM24330.1 vs. NCBI_GenBank
Match: gi|1158937405|ref|XP_020317024.1| (germinal-center associated nuclear protein isoform X2 [Oncorhynchus kisutch]) HSP 1 Score: 124.79 bits (312), Expect = 5.458e-28 Identity = 95/308 (30.84%), Postives = 143/308 (46.43%), Query Frame = 0
Query: 1 MCPPDEVALRESTRNKL---EDRPGLSPA--LTMIKDLERNP-----PADYPTAKIRPLEWLLRSVEYMEDELMDKGRSGRVGGGEGEVLDGDRSWGQVTALENYKFHFQRLRMVAKELIMQNFSYGGNISTTSIEIVERLTRYWIIFQHHLNANEDFVRDDGKQNTEQLTNTLVPLQENYKYAHMLGQPALCAHEAEFQAYGVLLTGDLKQALKGGVG----VSRSPEVRLAVDVLTCVETDNFARFFSLLRRAPYLPGCLMAKYVERMREKALEVWGRAYNPTKARGTAFRTADVLRALCMQDEDE 294
MCP E +RE TRN+L E P + IK+ R+ P Y ++RPL L +++Y+ ++MD+G D R W Y F + R R + K++ Q+ ++ ++E+ TR+ + HHL E + D K N E +T L L+E Y+ G C EAEF+ Y VLL D+ L+ V SPEV+ AV + ++NF RFF L++ A YL GCL+ +Y ++R KAL A+ R T F D++R L +D+ E
Sbjct: 789 MCPEKERYMRE-TRNQLSCFEVVPDTERVDHVAAIKEYSRSSADQEEPLPY---ELRPLPVLSMTMDYLVTQIMDQGH------------DNYRDW--------YDFVWNRTRGIRKDITQQHL-----CDPLTVSLIEKCTRFHVHCAHHL-CQEHMMTFDAKINNENMTKCLQSLKEMYQDLSTRG--VYCPQEAEFRQYNVLLKLDVGDVLREVQQFRDEVRNSPEVKFAVQAFAALNSNNFVRFFKLVKSASYLAGCLLHRYFNQVRGKALRTLNNAHTAGSQRSTIFPLEDLVRMLMFEDDAE 1064
BLAST of EWM24330.1 vs. NCBI_GenBank
Match: gi|1158937401|ref|XP_020317021.1| (germinal-center associated nuclear protein isoform X1 [Oncorhynchus kisutch] >gi|1158937403|ref|XP_020317023.1| germinal-center associated nuclear protein isoform X1 [Oncorhynchus kisutch]) HSP 1 Score: 124.79 bits (312), Expect = 5.946e-28 Identity = 95/308 (30.84%), Postives = 143/308 (46.43%), Query Frame = 0
Query: 1 MCPPDEVALRESTRNKL---EDRPGLSPA--LTMIKDLERNP-----PADYPTAKIRPLEWLLRSVEYMEDELMDKGRSGRVGGGEGEVLDGDRSWGQVTALENYKFHFQRLRMVAKELIMQNFSYGGNISTTSIEIVERLTRYWIIFQHHLNANEDFVRDDGKQNTEQLTNTLVPLQENYKYAHMLGQPALCAHEAEFQAYGVLLTGDLKQALKGGVG----VSRSPEVRLAVDVLTCVETDNFARFFSLLRRAPYLPGCLMAKYVERMREKALEVWGRAYNPTKARGTAFRTADVLRALCMQDEDE 294
MCP E +RE TRN+L E P + IK+ R+ P Y ++RPL L +++Y+ ++MD+G D R W Y F + R R + K++ Q+ ++ ++E+ TR+ + HHL E + D K N E +T L L+E Y+ G C EAEF+ Y VLL D+ L+ V SPEV+ AV + ++NF RFF L++ A YL GCL+ +Y ++R KAL A+ R T F D++R L +D+ E
Sbjct: 789 MCPEKERYMRE-TRNQLSCFEVVPDTERVDHVAAIKEYSRSSADQEEPLPY---ELRPLPVLSMTMDYLVTQIMDQGH------------DNYRDW--------YDFVWNRTRGIRKDITQQHL-----CDPLTVSLIEKCTRFHVHCAHHL-CQEHMMTFDAKINNENMTKCLQSLKEMYQDLSTRG--VYCPQEAEFRQYNVLLKLDVGDVLREVQQFRDEVRNSPEVKFAVQAFAALNSNNFVRFFKLVKSASYLAGCLLHRYFNQVRGKALRTLNNAHTAGSQRSTIFPLEDLVRMLMFEDDAE 1064
BLAST of EWM24330.1 vs. NCBI_GenBank
Match: gi|301115632|ref|XP_002905545.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262110334|gb|EEY68386.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 123.635 bits (309), Expect = 1.304e-27 Identity = 101/313 (32.27%), Postives = 153/313 (48.88%), Query Frame = 0
Query: 1 MCPP---------DEVALRESTRNKLEDRPGLSPALTMIKDLERNPPADYP---TAKIRPLEWLLRSVEYMEDELMDKGRSGRVGGGEGEVLDGDRSWGQV-TALENYKFHFQRLRMVAKELIMQNF-SYGGNISTTSIEIVERLTRYWIIFQHHLNANEDFVRDDGKQNTEQLTNTLVPLQENYKYAHMLGQPA-LCAHEAEFQAYGVLLTGDLKQA---LKGGVGVSR----SPEVRLAVDVLTCVETDNFARFFSLLRRAPYLPGCLMAKYVERMREKALEVWGRAYNPTKARGTAFRTADVLRALCMQD 291
MC P DE+++ E DRPG + +IK +R+ AD+ +IRP L R+ Y+E +MD + G LD ++ +E Y F + R RM+ K+ ++QN+ GG + +++I ER+ RY ++ +H L + FV +QN EQL TL L E Y +H +G PA L EAE +AY +L T D + LK +SR SP ++ A+ V T ++ +FFSLLR+A YL CL+ +Y+ +R L RAY R + D++ LC D
Sbjct: 431 MCSPAERELHIRVDELSVFEKC---FPDRPGTERDM-IIKRFQRSS-ADHKLDIAEEIRPPGVLRRTQLYIEQAIMDLDQCG---------LDPRFQTPRIPEPIELYNFCWDRFRMIRKDFVLQNYRGAGGRVHPIALDIHERIARYHVLSEHELIEVQSFV---AQQNMEQLGQTLKSLNELYDESHKVGDPAYLSPFEAECRAYFILCTLDNGRGMDVLKYVKNLSRHILESPHMKFAMRVFVARHTGDYFQFFSLLRQATYLQSCLLFRYIPNVRSSTLLRMNRAY-----RSQTYPLEDLVELLCFDD 721
BLAST of EWM24330.1 vs. NCBI_GenBank
Match: gi|557278081|ref|XP_006022113.1| (PREDICTED: germinal-center associated nuclear protein [Alligator sinensis]) HSP 1 Score: 123.635 bits (309), Expect = 1.558e-27 Identity = 107/322 (33.23%), Postives = 149/322 (46.27%), Query Frame = 0
Query: 1 MCPPDEVALRESTRNKL---EDRPGLSPA--LTMIKDLERNPPADYPTA---KIRPLEWLLRSVEYMEDELMDKGRSGRVGGGEGEVLDGDRSWGQVTALENYKFHFQRLRMVAKELIMQNFSYGGNISTTSIEIVERLTRYWIIFQHHLNANEDFVRDDGKQNTEQLTNTLVPLQENYKYAHMLGQPAL-CAHEAEFQAYGVLLT---GD-LKQALKGGVGVSRSPEVRLAVDVLTCVETDNFARFFSLLRRAPYLPGCLMAKYVERMREKALEVWGRAYNPTKARGTAFRTADVLRALCMQDEDELKALAVSRPWVVVDG 309
MCP E +RE TRN+L E PG IK+ R+ AD ++RP E L +++Y+ ++MD+G EG R W Y F + R R + K++ Q+ ++ ++E+ TR+ I HHL E D K N E LT L L+E Y+ LG L C EAEF+ Y VLLT GD L++ + V SPEVR AV + ++NF RFF L+R A YL CL+ Y ++R +AL+ AY + R T F V+R L +D E V DG
Sbjct: 640 MCPEKERYMRE-TRNQLSILEVIPGSDKVDHRAAIKEYSRSS-ADQEEPLPHELRPSEVLSMTMDYLVTQIMDQG--------EGNY----REW--------YDFVWNRTRGIRKDITQQHL-----CDPLTVSLIEKCTRFHIHCAHHL-CEEPMSSFDAKINNENLTKCLQSLKEMYQD---LGNKGLYCKSEAEFRGYNVLLTLNKGDILREVQQFHPSVRNSPEVRFAVQAFAALNSNNFVRFFKLVRAASYLNACLLHCYFNQIRREALKSLNFAYTVSPQRSTVFPLDSVVRMLLFKDCQEATHFINDYSLNVSDG 930
BLAST of EWM24330.1 vs. NCBI_GenBank
Match: gi|565312800|gb|ETE65289.1| (80 kDa MCM3-associated protein, partial [Ophiophagus hannah]) HSP 1 Score: 122.865 bits (307), Expect = 2.687e-27 Identity = 105/338 (31.07%), Postives = 155/338 (45.86%), Query Frame = 0
Query: 1 MCPPDEVALRESTRNKL---EDRPGLSPA--LTMIKDLERNPPADYPTA---KIRPLEWLLRSVEYMEDELMDKGRSGRVGGGEGEVLDGDRSWGQVTALENYKFHFQRLRMVAKELIMQNFSYGGNISTTSIEIVERLTRYWIIFQHHLNANEDFVRDDGKQNTEQLTNTLVPLQENYKYAHMLGQPALCAHEAEFQAYGVLLT---GD-LKQALKGGVGVSRSPEVRLAVDVLTCVETDNFARFFSLLRRAPYLPGCLMAKYVERMREKALEVWGRAYNPTKARGTAFRTADVLRALCMQDEDELKALAVSRPWVVVDGD---------RPASLPR 317
MCP E +RE TRN+L E PG IK+ R+ AD ++RP E L +++Y+ ++MDKG EG R W Y F + R R + K++ Q+ S ++ ++E+ TR+ I HHL E D K N E +T L L+E Y+ + + C EAEF+ Y VLL GD L++ + V SPEVR AV + ++NF +FF L++ A YL CL+ Y ++R+ AL+ AY R T F +++R L ++ +E VV DG P SLP+
Sbjct: 626 MCPEKERYMRE-TRNQLSFFEVIPGTDKVDHAAAIKEYSRSS-ADQEEPLPHELRPSEVLSMTMDYLVTQIMDKG--------EGNY----REW--------YDFVWNRTRGIRKDITQQHL-----CSPLTVSLIEKCTRFHIHCSHHL-CEEPMSSFDAKINNENMTKCLQSLKEMYQ--DLANKGIYCKGEAEFRGYNVLLNLNKGDILREVQQFRPSVRNSPEVRFAVQAFAALNSNNFVKFFKLVQTASYLNACLLHCYFNQIRKDALKCLNFAYTVNYQRSTIFPLENIVRMLLFRNLEEATDFINYYGLVVSDGSVELNRSAFLEPESLPK 933
BLAST of EWM24330.1 vs. NCBI_GenBank
Match: gi|970660422|gb|KUF97974.1| (Dysferlin protein [Phytophthora nicotianae]) HSP 1 Score: 122.479 bits (306), Expect = 3.459e-27 Identity = 101/313 (32.27%), Postives = 149/313 (47.60%), Query Frame = 0
Query: 1 MCPP---------DEVALRESTRNKLEDRPGLSPALTMIKDLERNPPADYPT---AKIRPLEWLLRSVEYMEDELMDKGRSGRVGGGEGEVLDGDRSWGQV-TALENYKFHFQRLRMVAKELIMQNF-SYGGNISTTSIEIVERLTRYWIIFQHHLNANEDFVRDDGKQNTEQLTNTLVPLQENYKYAHMLGQPA-LCAHEAEFQAYGVLLTGD-------LKQALKGGVGVSRSPEVRLAVDVLTCVETDNFARFFSLLRRAPYLPGCLMAKYVERMREKALEVWGRAYNPTKARGTAFRTADVLRALCMQD 291
MC P DE+++ E DRPG S +IK +R+ AD+ +IRP L R+ Y+E +MD + G LD +V +E Y F + R RM+ K+ ++QN+ GG + +++I ER+ RY ++ +H L FV +QN EQL TL L E Y + +G PA L EAE +AY +L T D LK + SP ++ A+ V T ++ +FFSLLR+A YL CL+ +Y+ +R AL RAY R + D++ LC D
Sbjct: 108 MCSPAERELHIRVDELSVFEKC---FPDRPG-SERDMIIKRFQRSS-ADHKLDIPEEIRPPGVLRRTQLYIEQAIMDLDQCG---------LDPRFQTPRVPEPIELYNFCWDRFRMIRKDFVLQNYRGAGGRVHPIALDIHERIARYHVLSEHELIETPSFV---AQQNMEQLGQTLKSLNELYDESQKVGDPAYLSPFEAECRAYFILCTLDNGRGMDVLKYVKNIPRHILESPHMKFAMRVFVARHTGDYFQFFSLLRQATYLQSCLLFRYIPNVRSSALLRMNRAY-----RSQTYPLEDLVELLCFDD 398
BLAST of EWM24330.1 vs. NCBI_GenBank
Match: gi|929285493|ref|XP_014019743.1| (PREDICTED: germinal-center associated nuclear protein [Salmo salar] >gi|929285495|ref|XP_014019744.1| PREDICTED: germinal-center associated nuclear protein [Salmo salar]) HSP 1 Score: 122.479 bits (306), Expect = 3.765e-27 Identity = 95/308 (30.84%), Postives = 142/308 (46.10%), Query Frame = 0
Query: 1 MCPPDEVALRESTRNKL---EDRPGLSPA--LTMIKDLERNP-----PADYPTAKIRPLEWLLRSVEYMEDELMDKGRSGRVGGGEGEVLDGDRSWGQVTALENYKFHFQRLRMVAKELIMQNFSYGGNISTTSIEIVERLTRYWIIFQHHLNANEDFVRDDGKQNTEQLTNTLVPLQENYKYAHMLGQPALCAHEAEFQAYGVLLTGDLKQALKGGVG----VSRSPEVRLAVDVLTCVETDNFARFFSLLRRAPYLPGCLMAKYVERMREKALEVWGRAYNPTKARGTAFRTADVLRALCMQDEDE 294
MCP E +RE TRN+L E P + IK+ R+ P Y ++RPL L +++Y+ ++MD+G D R W Y F + R R + K++ Q+ ++ ++E+ TR+ + HHL E + D K N E +T L L+E Y+ G C EAEF+ Y VLL D+ L+ V SPEV+ AV + ++NF RFF L++ A YL GCL+ +Y ++R KAL A+ R T F D++R L +D E
Sbjct: 787 MCPEKERYMRE-TRNQLSCFEVVPDTERVDHVAAIKEYSRSSADQEEPLPY---ELRPLPVLSMTMDYLVTQIMDQGH------------DNYRDW--------YDFVWNRTRGIRKDITQQHL-----CDPLTVSLIEKCTRFHVHCAHHL-CQEHMMTFDAKINNENMTKCLQSLKEMYQDLSTRG--VYCPQEAEFRQYNVLLKLDVGDVLREVQQFRDEVRNSPEVKFAVQAFAALNSNNFVRFFKLVKSASYLAGCLLHRYFNQVRGKALRTLNNAHVAGSQRSTIFPLEDLVRMLMFEDAAE 1062
BLAST of EWM24330.1 vs. NCBI_GenBank
Match: gi|260794593|ref|XP_002592293.1| (hypothetical protein BRAFLDRAFT_71033 [Branchiostoma floridae] >gi|229277509|gb|EEN48304.1| hypothetical protein BRAFLDRAFT_71033 [Branchiostoma floridae]) HSP 1 Score: 122.094 bits (305), Expect = 3.877e-27 Identity = 82/269 (30.48%), Postives = 138/269 (51.30%), Query Frame = 0
Query: 45 KIRPLEWLLRSVEYMEDELMDKGRSGRVGGGEGEVLDGDRSWGQVTALENYKFHFQRLRMVAKELIMQNFSYGGNISTTSIEIVERLTRYWIIFQHHLNANEDFVRDDGKQNTEQLTNTLVPLQENYKYAHMLGQPALCAHEAEFQAYGVLLT---GD-LKQALKGGVGVSRSPEVRLAVDVLTCVETDNFARFFSLLRRAPYLPGCLMAKYVERMREKALEVWGRAYNPTKARGTAFRTADVLRALCMQDEDELKALAVSRPWVVVDG 309
++RP L ++ Y+ + ++D GR G +WG + Y F + R R + K++ Q + T++++ E+ R+ I H L E D K N E LT L L++ Y + G+ C +E EF+AY +LL GD L++ + V SP+++ A+ V + + +NF RFF LL+ APYLP C+M +Y+ ++R ++++V RAY+ T R T F +D +R + +DEDE + + V+DG
Sbjct: 666 ELRPPHVLTLTMNYLVNNILDLGRDG--------------NWG-----DWYDFVWNRTRGIRKDITQQLLT-----DHTAVDLTEKCARFHIHCAHQL-CQEPMTVFDPKINNENLTKCLQSLKQFYHDLTVEGR--FCNNEGEFRAYELLLNLNQGDILREVQQLRPEVRNSPQMKFALQVFSALNNNNFVRFFKLLQAAPYLPACIMHRYLTQVRTQSIKVMNRAYSIT-GRTTQFPVSDYMRMMGFEDEDETAIFSEAFGLAVLDG 906 The following BLAST results are available for this feature:
BLAST of EWM24330.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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