rna6358, rna6358 (mRNA) Nannochloropsis gaditana

Overview
Namerna6358
Unique Namerna6358
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length390
Alignment locationCM002468.1:338243..339657 -

Link to JBrowse

Properties
Property NameValue
Product80 kda mcm3-associated protein
Orig transcript idgnl|cribi|Naga_101616g1.1485.mrna
Orig protein idgnl|cribi|Naga_101616g1.1485
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:338243..339657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101616g1gene6144Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6358rna6358-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24330.1cds6343Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6358 ID=rna6358|Name=rna6358|organism=Nannochloropsis gaditana|type=mRNA|length=390bp
ATGACGCGGGTGGGTTTTCGCTCCCCCGCCTCTCCTCGTCCGGGACAGCG
GGCTGCACGGGGCCTTTTTGGCCTGCGCCGCCGCCGAATTCCAAATGGAT
TTGCAGAAGGCAAGCCAACAGCCGCGGTTGGGACTGGATACGGCCTTGCC
CTGGGGTGGAACGATCCTCGACGGCTGCTGCGGCTTGAGAATCTCCTGGA
TGCTGTCGCGCTCCCCGCCTTGCCTCCCTCCCTGTCAGAGGAGCAGGATC
CTGTTCGGAGTAAACCAGGTCAAGACGAGGTTGGAGTGGGGACGGTCCTG
GAAATACGATTTTCCAGTAAACGGGTGAGAGACATGCTCACTCAAAGTAC
ATTGTGTACGACTCTCGCTCACACACATGCGTGTAGATAG
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protein sequence of rna6358

>rna6358-protein ID=rna6358-protein|Name=rna6358|organism=Nannochloropsis gaditana|type=polypeptide|length=320bp
MCPPDEVALRESTRNKLEDRPGLSPALTMIKDLERNPPADYPTAKIRPLE
WLLRSVEYMEDELMDKGRSGRVGGGEGEVLDGDRSWGQVTALENYKFHFQ
RLRMVAKELIMQNFSYGGNISTTSIEIVERLTRYWIIFQHHLNANEDFVR
DDGKQNTEQLTNTLVPLQENYKYAHMLGQPALCAHEAEFQAYGVLLTGDL
KQALKGGVGVSRSPEVRLAVDVLTCVETDNFARFFSLLRRAPYLPGCLMA
KYVERMREKALEVWGRAYNPTKARGTAFRTADVLRALCMQDEDELKALAV
SRPWVVVDGDRPASLPRLFA
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mRNA from alignment at CM002468.1:338243..339657-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6358 ID=rna6358|Name=rna6358|organism=Nannochloropsis gaditana|type=mRNA|length=1415bp|location=Sequence derived from alignment at CM002468.1:338243..339657- (Nannochloropsis gaditana)
ATGTGCCCCCCTGACGAGGTGGCTCTCCGTGAAAGCACCCGCAACAAGCT
GGAGGACCGGCCAGGCCTTTCCCCCGCCCTGACCATGATCAAAGACCTGG
AGCGGAATCCGCCCGCGGACTACCCCACGGCCAAGATCCGGCCGCTCGAG
TGGCTGCTGCGCTCGGTCGAGTACATGGAGGACGAGCTCATGGACAAGGG
CCGGTCGGGGCGGGTGGGCGGGGGGGAGGGCGAGGTCTTGGACGGAGACC
GGTCCTGGGGCCAGGTGACGGCCTTGGAGAACTACAAGTTCCACTTCCAA
CGCCTCCGCATGGTGGCCAAGGAGTTGATCATGCAGGTACGGGGGGGGGG
GGAGCGGGGGGGCGTGGAGAGAGGGGCGATGTCCTGCCGCGAGCCTGGGC
CCTAGGCCCCGGCTCCCTGCAAGTCCTTGTCAATCCATCAACCACGCCCT
TCCCACGCGCCACAGAACTTCTCGTACGGCGGGAACATCTCGACCACGAG
CATCGAGATCGTGGAGCGTCTGACCCGGTATTGGATCATCTTCCAGCACC
ATTTGAACGCCAACGAGGACTTCGTGCGGGACGACGGGAAGCAGAATACG
GAGCAGTTGACCAACACCCTGGTGCCCCTCCAGGAGAACTACAAGTACGC
GCACATGCTCGGGCAGCCCGCCCTCTGCGCCCACGAGGCCGAGTTCCAGG
CCTACGGCGTCCTCCTCACGGGGGACTTGAAGCAGGCCTTGAAAGGCGGG
GTCGGCGTGAGCCGCTCTCCGGAGGTACGGCTGGCAGTGGACGTGCTTAC
CTGCGTGGAAACGGACAATTTCGCGCGGTTTTTCAGTCTTTTGCGCCGCG
CTCCTTACCTTCCGGGGTGTCTGATGGCCAAATACGTGGAACGGATGCGC
GAGAAGGCCTTGGAAGTCTGGGGCCGTGCCTACAACCCGACCAAGGCCCG
CGGCACTGCCTTTCGCACCGCCGATGTCCTACGGGCGCTGTGCATGCAGG
ACGAGGACGAGCTGAAGGCCCTGGCAGTGAGCCGACCCTGGGTGGTGGTA
GGAGAGGGGAGGGAGGCGGGAAGCACCACGGTGCGGCGGGCCACGGCTGC
GGAACGGGAGGGAGGGCTCCACTCCCCGGGCCTCTCCATGGGCGGGGCTG
CCGGGGTGGCGTGGGACGAGGAGAAGCGACTCGTCCAGCGCCGCAAGGCT
CGTGCCGCCATGATCCTCAAGTCGTCTTTTCCTTTCGTCCCCGCCATCGA
GGCCAAAGCGGACGGGGTACCTTTCCGGGACCTGACCCGCGGTTGGCAGG
GCGCGCTCTCTCTTTCCAGATCTTGGGATCGCCAGATGCTGCCCAGCCCT
GTGCCCTCCCTCTCAAGCAGGTCGACGGGGATCGCCCCGCCTCCCTTCCC
CGCCTCTTTGCCTAG
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Coding sequence (CDS) from alignment at CM002468.1:338243..339657-

>rna6358 ID=rna6358|Name=rna6358|organism=Nannochloropsis gaditana|type=CDS|length=2889bp|location=Sequence derived from alignment at CM002468.1:338243..339657- (Nannochloropsis gaditana)
GTCGACGGGGATCGCCCCGCCTCCCTTCCCCGCCTCTTTGCCTAGAACTT
CTCGTACGGCGGGAACATCTCGACCACGAGCATCGAGATCGTGGAGCGTC
TGACCCGGTATTGGATCATCTTCCAGCACCATTTGAACGCCAACGAGGAC
TTCGTGCGGGACGACGGGAAGCAGAATACGGAGCAGTTGACCAACACCCT
GGTGCCCCTCCAGGAGAACTACAAGTACGCGCACATGCTCGGGCAGCCCG
CCCTCTGCGCCCACGAGGCCGAGTTCCAGGCCTACGGCGTCCTCCTCACG
GGGGACTTGAAGCAGGCCTTGAAAGGCGGGGTCGGCGTGAGCCGCTCTCC
GGAGGTACGGCTGGCAGTGGACGTGCTTACCTGCGTGGAAACGGACAATT
TCGCGCGGTTTTTCAGTCTTTTGCGCCGCGCTCCTTACCTTCCGGGGTGT
CTGATGGCCAAATACGTGGAACGGATGCGCGAGAAGGCCTTGGAAGTCTG
GGGCCGTGCCTACAACCCGACCAAGGCCCGCGGCACTGCCTTTCGCACCG
CCGATGTCCTACGGGCGCTGTGCATGCAGGACGAGGACGAGCTGAAGGCC
CTGGCAGTGAGCCGACCCTGGGTGGTGATGTGCCCCCCTGACGAGGTGGC
TCTCCGTGAAAGCACCCGCAACAAGCTGGAGGACCGGCCAGGCCTTTCCC
CCGCCCTGACCATGATCAAAGACCTGGAGCGGAATCCGCCCGCGGACTAC
CCCACGGCCAAGATCCGGCCGCTCGAGTGGCTGCTGCGCTCGGTCGAGTA
CATGGAGGACGAGCTCATGGACAAGGGCCGGTCGGGGCGGGTGGGCGGGG
GGGAGGGCGAGGTCTTGGACGGAGACCGGTCCTGGGGCCAGGTGACGGCC
TTGGAGAACTACAAGTTCCACTTCCAACGCCTCCGCATGGTGGCCAAGGA
GTTGATCATGCAGGTCGACGGGGATCGCCCCGCCTCCCTTCCCCGCCTCT
TTGCCTAGAACTTCTCGTACGGCGGGAACATCTCGACCACGAGCATCGAG
ATCGTGGAGCGTCTGACCCGGTATTGGATCATCTTCCAGCACCATTTGAA
CGCCAACGAGGACTTCGTGCGGGACGACGGGAAGCAGAATACGGAGCAGT
TGACCAACACCCTGGTGCCCCTCCAGGAGAACTACAAGTACGCGCACATG
CTCGGGCAGCCCGCCCTCTGCGCCCACGAGGCCGAGTTCCAGGCCTACGG
CGTCCTCCTCACGGGGGACTTGAAGCAGGCCTTGAAAGGCGGGGTCGGCG
TGAGCCGCTCTCCGGAGGTACGGCTGGCAGTGGACGTGCTTACCTGCGTG
GAAACGGACAATTTCGCGCGGTTTTTCAGTCTTTTGCGCCGCGCTCCTTA
CCTTCCGGGGTGTCTGATGGCCAAATACGTGGAACGGATGCGCGAGAAGG
CCTTGGAAGTCTGGGGCCGTGCCTACAACCCGACCAAGGCCCGCGGCACT
GCCTTTCGCACCGCCGATGTCCTACGGGCGCTGTGCATGCAGGACGAGGA
CGAGCTGAAGGCCCTGGCAGTGAGCCGACCCTGGGTGGTGATGTGCCCCC
CTGACGAGGTGGCTCTCCGTGAAAGCACCCGCAACAAGCTGGAGGACCGG
CCAGGCCTTTCCCCCGCCCTGACCATGATCAAAGACCTGGAGCGGAATCC
GCCCGCGGACTACCCCACGGCCAAGATCCGGCCGCTCGAGTGGCTGCTGC
GCTCGGTCGAGTACATGGAGGACGAGCTCATGGACAAGGGCCGGTCGGGG
CGGGTGGGCGGGGGGGAGGGCGAGGTCTTGGACGGAGACCGGTCCTGGGG
CCAGGTGACGGCCTTGGAGAACTACAAGTTCCACTTCCAACGCCTCCGCA
TGGTGGCCAAGGAGTTGATCATGCAGGTCGACGGGGATCGCCCCGCCTCC
CTTCCCCGCCTCTTTGCCTAGAACTTCTCGTACGGCGGGAACATCTCGAC
CACGAGCATCGAGATCGTGGAGCGTCTGACCCGGTATTGGATCATCTTCC
AGCACCATTTGAACGCCAACGAGGACTTCGTGCGGGACGACGGGAAGCAG
AATACGGAGCAGTTGACCAACACCCTGGTGCCCCTCCAGGAGAACTACAA
GTACGCGCACATGCTCGGGCAGCCCGCCCTCTGCGCCCACGAGGCCGAGT
TCCAGGCCTACGGCGTCCTCCTCACGGGGGACTTGAAGCAGGCCTTGAAA
GGCGGGGTCGGCGTGAGCCGCTCTCCGGAGGTACGGCTGGCAGTGGACGT
GCTTACCTGCGTGGAAACGGACAATTTCGCGCGGTTTTTCAGTCTTTTGC
GCCGCGCTCCTTACCTTCCGGGGTGTCTGATGGCCAAATACGTGGAACGG
ATGCGCGAGAAGGCCTTGGAAGTCTGGGGCCGTGCCTACAACCCGACCAA
GGCCCGCGGCACTGCCTTTCGCACCGCCGATGTCCTACGGGCGCTGTGCA
TGCAGGACGAGGACGAGCTGAAGGCCCTGGCAGTGAGCCGACCCTGGGTG
GTGATGTGCCCCCCTGACGAGGTGGCTCTCCGTGAAAGCACCCGCAACAA
GCTGGAGGACCGGCCAGGCCTTTCCCCCGCCCTGACCATGATCAAAGACC
TGGAGCGGAATCCGCCCGCGGACTACCCCACGGCCAAGATCCGGCCGCTC
GAGTGGCTGCTGCGCTCGGTCGAGTACATGGAGGACGAGCTCATGGACAA
GGGCCGGTCGGGGCGGGTGGGCGGGGGGGAGGGCGAGGTCTTGGACGGAG
ACCGGTCCTGGGGCCAGGTGACGGCCTTGGAGAACTACAAGTTCCACTTC
CAACGCCTCCGCATGGTGGCCAAGGAGTTGATCATGCAG
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Synonyms
Publications