EWM24346.1, cds6333 (CDS) Nannochloropsis gaditana

Overview
NameEWM24346.1
Unique Namecds6333
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:306928..308302 +
Alignment locationCM002468.1:308464..308969 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24346.1
Productankyrin repeat domain protein
Orig transcript idgnl|cribi|Naga_100105g10.10585.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:306928..308302 +
CM002468.1supercontigCM002468.1:308464..308969 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
BLAST of EWM24346.1 vs. NCBI_GenBank
Match: gi|585105740|gb|EWM24346.1| (ankyrin repeat domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1269.6 bits (3284), Expect = 0.000e+0
Identity = 626/626 (100.00%), Postives = 626/626 (100.00%), Query Frame = 0
Query:    1 MQAHTYTTISINLRQENMKKITSFASPRRLGGKADEAAREEALSSTPNSESALDLTADIKEILIAGARTSQATKNSPRNGLDGQNNNISSSPRKIPAAFTSLAPPLSPESPREKRGLLDFSALSSLSPGRKKVAGLGCIRNTTSPLRAGSAPAGAGFVSQPTSPISSSPSSPSYKFPLSSRSPARGSSGSLRLHSLRNLTGTPPNTARSPKPADGLWGLLGYTSPLDSAVHEAARQGDLPLLQTLLTQNPTLVSTPGNDNATPLMLAAGAGQEETVRYLLRALSGRADVWATDGARRTALHHLARGTSDAPSVALCLLGLDQEGGRPQHLDWEDVEGRTAVHYAASRGNLQVLRFLLGKGANPLAVDKEGLDPLQLLLQEKSRSVSVQSKGGEIERCLQEAQQHARALTEGGALHSHDSQEVSKKKGSGITCVWECMARLCGEAVEDAGDGEEDDIPQPVEHQLLCVFRASSIPPDASEVYLDNLRRHGYDNLMALRAIASERFKLSLGKYVPDRQDRKRLIKALNAMIDTVDESGKIPEPPLHLPVGEYLKHLLSVSDDLAMRYAEGLRGMNVHTGAQLGTASYDEVEMNLGSTLLQGHKKALKIWLRLRAADREGSGRGEMKSP 626
            MQAHTYTTISINLRQENMKKITSFASPRRLGGKADEAAREEALSSTPNSESALDLTADIKEILIAGARTSQATKNSPRNGLDGQNNNISSSPRKIPAAFTSLAPPLSPESPREKRGLLDFSALSSLSPGRKKVAGLGCIRNTTSPLRAGSAPAGAGFVSQPTSPISSSPSSPSYKFPLSSRSPARGSSGSLRLHSLRNLTGTPPNTARSPKPADGLWGLLGYTSPLDSAVHEAARQGDLPLLQTLLTQNPTLVSTPGNDNATPLMLAAGAGQEETVRYLLRALSGRADVWATDGARRTALHHLARGTSDAPSVALCLLGLDQEGGRPQHLDWEDVEGRTAVHYAASRGNLQVLRFLLGKGANPLAVDKEGLDPLQLLLQEKSRSVSVQSKGGEIERCLQEAQQHARALTEGGALHSHDSQEVSKKKGSGITCVWECMARLCGEAVEDAGDGEEDDIPQPVEHQLLCVFRASSIPPDASEVYLDNLRRHGYDNLMALRAIASERFKLSLGKYVPDRQDRKRLIKALNAMIDTVDESGKIPEPPLHLPVGEYLKHLLSVSDDLAMRYAEGLRGMNVHTGAQLGTASYDEVEMNLGSTLLQGHKKALKIWLRLRAADREGSGRGEMKSP
Sbjct:    1 MQAHTYTTISINLRQENMKKITSFASPRRLGGKADEAAREEALSSTPNSESALDLTADIKEILIAGARTSQATKNSPRNGLDGQNNNISSSPRKIPAAFTSLAPPLSPESPREKRGLLDFSALSSLSPGRKKVAGLGCIRNTTSPLRAGSAPAGAGFVSQPTSPISSSPSSPSYKFPLSSRSPARGSSGSLRLHSLRNLTGTPPNTARSPKPADGLWGLLGYTSPLDSAVHEAARQGDLPLLQTLLTQNPTLVSTPGNDNATPLMLAAGAGQEETVRYLLRALSGRADVWATDGARRTALHHLARGTSDAPSVALCLLGLDQEGGRPQHLDWEDVEGRTAVHYAASRGNLQVLRFLLGKGANPLAVDKEGLDPLQLLLQEKSRSVSVQSKGGEIERCLQEAQQHARALTEGGALHSHDSQEVSKKKGSGITCVWECMARLCGEAVEDAGDGEEDDIPQPVEHQLLCVFRASSIPPDASEVYLDNLRRHGYDNLMALRAIASERFKLSLGKYVPDRQDRKRLIKALNAMIDTVDESGKIPEPPLHLPVGEYLKHLLSVSDDLAMRYAEGLRGMNVHTGAQLGTASYDEVEMNLGSTLLQGHKKALKIWLRLRAADREGSGRGEMKSP 626          
BLAST of EWM24346.1 vs. NCBI_GenBank
Match: gi|553192487|ref|XP_005855580.1| (putative dna binding component of sbf [Nannochloropsis gaditana CCMP526] >gi|422293472|gb|EKU20772.1| putative dna binding component of sbf [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 739.184 bits (1907), Expect = 0.000e+0
Identity = 359/362 (99.17%), Postives = 359/362 (99.17%), Query Frame = 0
Query:  265 MLAAGAGQEETVRYLLRALSGRADVWATDGARRTALHHLARGTSDAPSVALCLLGLDQEGGRPQHLDWEDVEGRTAVHYAASRGNLQVLRFLLGKGANPLAVDKEGLDPLQLLLQEKSRSVSVQSKGGEIERCLQEAQQHARALTEGGALHSHDSQEVSKKKGSGITCVWECMARLCGEAVEDAGDGEEDDIPQPVEHQLLCVFRASSIPPDASEVYLDNLRRHGYDNLMALRAIASERFKLSLGKYVPDRQDRKRLIKALNAMIDTVDESGKIPEPPLHLPVGEYLKHLLSVSDDLAMRYAEGLRGMNVHTGAQLGTASYDEVEMNLGSTLLQGHKKALKIWLRLRAADREGSGRGEMKSP 626
            MLAAGAGQEETVRYLLRALSGRADVWATDGARRTALHHLARGTSDAP VALCLLGLDQEGGRPQHLDWEDVEGRTAVHYAASRGNLQVLRFLLGKGANPL VDKEGLDPLQLLLQEKSRSVSVQSKGGEIERCLQEAQQHARALTEGG LHSHDSQEVSKKKGSGITCVWECMARLCGEAVEDAGDGEEDDIPQPVEHQLLCVFRASSIPPDASEVYLDNLRRHGYDNLMALRAIASERFKLSLGKYVPDRQDRKRLIKALNAMIDTVDESGKIPEPPLHLPVGEYLKHLLSVSDDLAMRYAEGLRGMNVHTGAQLGTASYDEVEMNLGSTLLQGHKKALKIWLRLRAADREGSGRGEMKSP
Sbjct:    1 MLAAGAGQEETVRYLLRALSGRADVWATDGARRTALHHLARGTSDAPGVALCLLGLDQEGGRPQHLDWEDVEGRTAVHYAASRGNLQVLRFLLGKGANPLVVDKEGLDPLQLLLQEKSRSVSVQSKGGEIERCLQEAQQHARALTEGGTLHSHDSQEVSKKKGSGITCVWECMARLCGEAVEDAGDGEEDDIPQPVEHQLLCVFRASSIPPDASEVYLDNLRRHGYDNLMALRAIASERFKLSLGKYVPDRQDRKRLIKALNAMIDTVDESGKIPEPPLHLPVGEYLKHLLSVSDDLAMRYAEGLRGMNVHTGAQLGTASYDEVEMNLGSTLLQGHKKALKIWLRLRAADREGSGRGEMKSP 362          
BLAST of EWM24346.1 vs. NCBI_GenBank
Match: gi|1040916490|ref|XP_017220499.1| (PREDICTED: ankyrin-1 [Daucus carota subsp. sativus] >gi|1021026431|gb|KZM84218.1| hypothetical protein DCAR_028235 [Daucus carota subsp. sativus])

HSP 1 Score: 76.6406 bits (187), Expect = 5.756e-12
Identity = 57/163 (34.97%), Postives = 81/163 (49.69%), Query Frame = 0
Query:  227 DSAVHEAARQGDLPLLQTLLTQNPTLVSTPGNDNATPLMLAAGAGQEETVRYLLRALSGRADVWATDGARRTALHHLARGTSDAPSVALCLLGLDQEGGRPQHLDWEDVEGRTAVHYAASRGNLQVLRFLLGKGANPLAVDKEGLDPLQLLLQEKSRSVSVQS 389
            +S VH AAR GDL  +Q + + NP  V++    + TPL LAA AGQ + V YL      +ADV A       A+H  A+         L   G+  +    +        G TA+HYAA   +L+++++L+ KGAN  A  K G  P  L   E+ RS  V+S
Sbjct:    8 NSDVHAAARAGDLSGVQLICSTNPLAVNSRDKHSRTPLHLAAWAGQAQVVSYLCE---NKADVGAAAMDDMGAIHFAAQKGHLKVVQILISSGVSTKSANRK--------GMTALHYAAQGSSLELVKYLVKKGANLNAKTKAGKTPFDLASSEEIRSFLVES 159          
BLAST of EWM24346.1 vs. NCBI_GenBank
Match: gi|1026020902|ref|XP_016550233.1| (PREDICTED: receptor-interacting serine/threonine-protein kinase 4 isoform X1 [Capsicum annuum])

HSP 1 Score: 75.8702 bits (185), Expect = 1.003e-11
Identity = 56/165 (33.94%), Postives = 81/165 (49.09%), Query Frame = 0
Query:  230 VHEAARQGDLPLLQTLLTQNPTLVSTPGNDNATPLMLAAGAGQEETVRYLLRALSGRADVWATDGARRTALHHLARG---------TSDAPSVALCLLGLDQEGGRPQHLDWEDVEGRTAVHYAASRGNLQVLRFLLGKGANPLAVDKEGLDPLQLLLQEKSRSV 385
            +H AAR GDL  +QTL T NP  V++    + TPL LAA +G  + V YL++    +ADV A       A+H  A+           S   SV  C                 + +G TA+HYAA   +L+++++LL KGANP A +K G   + L   E+  S+
Sbjct:   16 LHVAARNGDLNAVQTLCTTNPLSVNSRDKHSRTPLHLAAWSGHAQIVDYLVK---NKADVGAAAMDDMGAIHFAAQKGHLEVVRLLVSSGVSVKSC-----------------NRKGMTALHYAAQGSHLELVKYLLKKGANPNAKNKAGKTSIDLASDEEVSSI 160          
BLAST of EWM24346.1 vs. NCBI_GenBank
Match: gi|808847744|gb|KKF08773.1| (Rho guanine nucleotide exchange factor 16 [Larimichthys crocea])

HSP 1 Score: 79.7221 bits (195), Expect = 1.187e-11
Identity = 55/146 (37.67%), Postives = 81/146 (55.48%), Query Frame = 0
Query:  230 VHEAARQGDLPLLQTLLTQNPTLVSTPGNDNATPLMLAAGAGQEETVRYLLRALSGRADVWATDGARRTALHHLARGTSDAPSVALCLLGLDQEGGRPQHLDWEDVEGRTAVHYAASRGNLQVLRFLLGKGANPLAVDKEGLDPLQ 375
            VH AA +GDLP L+ LL  +P +V++   + ATPL LA   GQ E V+YL++       + A DG   T LH  A+   +  +V + L+   + G     L   D +G TA+H+AASRG+ +VL +LL  G + + +D  G  PL 
Sbjct:  144 VHYAAAKGDLPSLRLLLGHSPNVVNSQTKNGATPLYLACQEGQLEVVQYLVKDCGADPSIRANDGM--TPLHAAAQMGHN--TVIVWLISFTEIG-----LTDRDSDGATAMHFAASRGHAKVLSWLLLHGGD-IVMDTWGGTPLH 279          
BLAST of EWM24346.1 vs. NCBI_GenBank
Match: gi|1109019732|ref|XP_019112188.1| (PREDICTED: espin [Larimichthys crocea])

HSP 1 Score: 78.9518 bits (193), Expect = 1.373e-11
Identity = 59/168 (35.12%), Postives = 88/168 (52.38%), Query Frame = 0
Query:  230 VHEAARQGDLPLLQTLLTQNPTLVSTPGNDNATPLMLAAGAGQEETVRYLLRALSGRADVWATDGARRTALHHLARGTSDAPSVALCLLGLDQEGGRPQHLDWEDVEGRTAVHYAASRGNLQVLRFLLGKGANPLAVDKEGLDPLQLLLQEKSRSVSVQSKGGEIERC 397
            VH AA +GDLP L+ LL  +P +V++   + ATPL LA   GQ E V+YL++       + A DG   T LH  A+   +  +V + L+   + G     L   D +G TA+H+AASRG+ +VL +LL  G + + +D  G  PL              ++ GE+E C
Sbjct:  144 VHYAAAKGDLPSLRLLLGHSPNVVNSQTKNGATPLYLACQEGQLEVVQYLVKDCGADPSIRANDGM--TPLHAAAQMGHN--TVIVWLISFTEIG-----LTDRDSDGATAMHFAASRGHAKVLSWLLLHGGD-IVMDTWGGTPLH-----------DAAENGELECC 290          
BLAST of EWM24346.1 vs. NCBI_GenBank
Match: gi|1191004797|ref|XP_020874541.1| (ankyrin repeat domain-containing protein 29 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 74.7146 bits (182), Expect = 2.124e-11
Identity = 56/177 (31.64%), Postives = 87/177 (49.15%), Query Frame = 0
Query:  230 VHEAARQGDLPLLQTLLTQNPTLVSTPGNDNATPLMLAAGAGQEETVRYLLRALSGRADVWATDGARRTALHHLARGTSDAPSVALCLLGLDQEGGRPQHLDWEDVEGRTAVHYAASRGNLQVLRFLLGKGANPLAVDKEGLDPLQLLLQEKSRSVSVQSKGGEIERCLQEAQQHAR 406
            +H AAR GDL  +Q++L+ NP  V++    + TPL LAA AG  E V YL +    +ADV A  G    A+H  ++       V   LL     GG  + +     +G T +HYAA   + +++++L+ KGAN  A  K G +P  +            +   E +  L+E ++ AR
Sbjct:   17 LHSAARSGDLAAVQSILSSNPLAVNSRDKHSRTPLHLAAWAGHNEVVSYLCK---NKADVGAAAGDDMGAIHFASQ--KGHLEVVRTLLSA---GGSVKSITR---KGLTPLHYAAQGSHFEIVKYLVKKGANVRATTKAGKNPADV------------AGNAETQNFLEECEEQAR 170          
BLAST of EWM24346.1 vs. NCBI_GenBank
Match: gi|1117526214|ref|XP_019445221.1| (PREDICTED: uncharacterized protein LOC109349041 [Lupinus angustifolius] >gi|1102711949|gb|OIW10724.1| hypothetical protein TanjilG_27670 [Lupinus angustifolius])

HSP 1 Score: 74.7146 bits (182), Expect = 2.831e-11
Identity = 55/157 (35.03%), Postives = 82/157 (52.23%), Query Frame = 0
Query:  230 VHEAARQGDLPLLQTLLTQNPTLVSTPGNDNATPLMLAAGAGQEETVRYLLRALSGRADVWATDGARRTALHHLA-RGTSDAPSVALCLLGLDQEGGRPQHLDWEDVEGRTAVHYAASRGNLQVLRFLLGKGANPLAVDKEGLDPLQLLLQEKSRSV 385
            +H AAR GDL  + ++LT NP  V++    + TPL LAA +GQ E V YL +    RADV A+     TA+H  A +G  +   V +      +   R         +G T++HYAA   +L+++++L  KGA+  A  K G  PL L   ++ RS 
Sbjct:   15 LHAAARSGDLIAVHSILTSNPLAVNSRDKHSRTPLHLAAFSGQTEVVSYLCK---NRADVGASAMDDMTAIHFAAQKGHLEVFRVLVSAGASFKASTR---------KGMTSLHYAAQGSHLELVKYLAKKGASLKAKTKAGKTPLDLATNQEVRSF 159          
BLAST of EWM24346.1 vs. NCBI_GenBank
Match: gi|661881381|emb|CDP14954.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 74.3294 bits (181), Expect = 4.038e-11
Identity = 53/165 (32.12%), Postives = 86/165 (52.12%), Query Frame = 0
Query:  227 DSAVHEAARQGDLPLLQTLLTQNPTLVSTPGNDNATPLMLAAGAGQEETVRYLLRALSGRADVWATDGARRTALHHLA-RGTSDAPSVALCLLGLDQEGGRPQHLDWEDVEGRTAVHYAASRGNLQVLRFLLGKGANPLAVDKEGLDPLQLLLQEKSRSVSVQSK 390
            D  +H AAR GDL  +Q + + NP  +++    + TPL LAA +GQ + V YL +    +ADV A       A+H  A +G ++   +           G P  +   + +G TA+HYAA   +L+++++L+ KGA   A +K G  P+ L   E+ R+  VQ +
Sbjct:   20 DEELHGAARSGDLEAVQRICSTNPLAINSRDKHSRTPLHLAAWSGQTKVVEYLCK----KADVGAAAMDDMGAIHFAAQKGHTEVVRILF-------NSGVP--IKSHNRKGMTALHYAAQGSHLELVKYLIKKGATIDAKNKAGKTPVDLAGSEEIRAFLVQCQ 171          
BLAST of EWM24346.1 vs. NCBI_GenBank
Match: gi|1024005759|gb|KZV31721.1| (ankyrin-3 [Dorcoceras hygrometricum])

HSP 1 Score: 73.9442 bits (180), Expect = 4.550e-11
Identity = 53/166 (31.93%), Postives = 86/166 (51.81%), Query Frame = 0
Query:  227 DSAVHEAARQGDLPLLQTLLTQNPTLVSTPGNDNATPLMLAAGAGQEETVRYLLRALSGRADVWATDGARRTALHHLARGTSDAPSVALCLLGLDQEGGRPQHLDWEDVEGRTAVHYAASRGNLQVLRFLLGKGANPLAVDKEGLDPLQLLLQEKSRSVSVQSKGG 392
            D  +H AAR GD+  +Q L + NP  V++    + TPL LAA +G +E V YL +    +AD+ A       A+H  A+         L ++ +    G    +   + +G TA+HYAA   +L+++++L+ KGAN  A +K G   + L   E+ R+  V+ K G
Sbjct:   14 DEKLHAAARSGDMKAVQELCSANPLAVNSRDRHSRTPLHLAAWSGHDEVVNYLCK---NKADIGAAAVDDMGAIHFAAQKGH------LQVIKILHASGIS--IKSYNRKGMTALHYAAQGSHLELVKYLVKKGANLDAKNKAGKTAVDLATSEEVRAFLVEWKNG 168          
The following BLAST results are available for this feature:
BLAST of EWM24346.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105740|gb|EWM24346.1|0.000e+0100.00ankyrin repeat domain protein [Nannochloropsis gad... [more]
gi|553192487|ref|XP_005855580.1|0.000e+099.17putative dna binding component of sbf [Nannochloro... [more]
gi|1040916490|ref|XP_017220499.1|5.756e-1234.97PREDICTED: ankyrin-1 [Daucus carota subsp. sativus... [more]
gi|1026020902|ref|XP_016550233.1|1.003e-1133.94PREDICTED: receptor-interacting serine/threonine-p... [more]
gi|808847744|gb|KKF08773.1|1.187e-1137.67Rho guanine nucleotide exchange factor 16 [Larimic... [more]
gi|1109019732|ref|XP_019112188.1|1.373e-1135.12PREDICTED: espin [Larimichthys crocea][more]
gi|1191004797|ref|XP_020874541.1|2.124e-1131.64ankyrin repeat domain-containing protein 29 [Arabi... [more]
gi|1117526214|ref|XP_019445221.1|2.831e-1135.03PREDICTED: uncharacterized protein LOC109349041 [L... [more]
gi|661881381|emb|CDP14954.1|4.038e-1132.12unnamed protein product [Coffea canephora][more]
gi|1024005759|gb|KZV31721.1|4.550e-1131.93ankyrin-3 [Dorcoceras hygrometricum][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6348rna6348Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications