EWM24352.1, cds6315 (CDS) Nannochloropsis gaditana

Overview
NameEWM24352.1
Unique Namecds6315
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:271049..272227 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24352.1
Productfe-only
Orig transcript idgnl|cribi|Naga_100163g7.7190.mrna
GeneHYDA1
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:271049..272227 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR009016Fe_hydrogenase
IPR004108Fe_hydrogenase_lsu_C
IPR003149Fe_hydrogenase_ssu-like
Homology
BLAST of EWM24352.1 vs. NCBI_GenBank
Match: gi|553187038|ref|XP_005854537.1| (Fe-Fe hydrogenase [Nannochloropsis gaditana CCMP526] >gi|422294519|gb|EKU21819.1| Fe-Fe hydrogenase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 806.209 bits (2081), Expect = 0.000e+0
Identity = 391/392 (99.74%), Postives = 392/392 (100.00%), Query Frame = 0
Query:    1 MRERHELFQVIDALEDQSRVKVAAVAPSVRVAMSEEFGLPPGRVSMGQIVAGLKLLGFDYVFDTNFSADLTIMEEGTELLSRLRKDPGAGPLPMFTSCCPGWINLVEKNYPELIPHLSSCKSPQGMMGALIKNVWAPRLERDPADVVSVSVMPCTAKKGEAHRPADRGATYSSKIDGPVPNNDYVLTTREIGRLFRLRKIALPALDAQVPDDPLGESTGAAVLFGATGGVMEAALRTAYELASGGQELPKMEMSDIRGLQGVKSSRVCIPNPDGKGPGAVVRVGVVHGTAETRALLERMKLGDPAAQFDFVEVMACRGGCIGGGGQSKSDDALVLQKRMAHVYNLDEKSALRKSHDNPSIQKLYESELGRPGSARSHALLHTHYADRSEQTT 392
            MRERHELFQVIDALEDQSRVKVAAVAPSVRVAMSEEFGLPPGRVSMGQIVAGLKLLGFDYVFDTNFSADLTIMEEGTELLSRLRKDPGAGPLPMFTSCCPGWINLVEKNYPELIPHLSSCKSPQGMMGALIKNVWAPRLERDPADVVSVSVMPCTAKKGEAHRPADRGATYSSKIDGPVPNNDYVLTTREIGRLFRLRKIALPALDAQVPDDPLGESTGAAVLFGATGGVMEAALRTAYELASGGQELPKMEMSDIRGLQGVKSSRVCIPNPDGKGPGAVVRVGVVHGTAETRALLERMKLGDPAAQFDFVEVMACRGGCIGGGGQSKSDDALVLQKRMAHVYNLDEKSALRKSHDNPSIQKLYESE+GRPGSARSHALLHTHYADRSEQTT
Sbjct:  236 MRERHELFQVIDALEDQSRVKVAAVAPSVRVAMSEEFGLPPGRVSMGQIVAGLKLLGFDYVFDTNFSADLTIMEEGTELLSRLRKDPGAGPLPMFTSCCPGWINLVEKNYPELIPHLSSCKSPQGMMGALIKNVWAPRLERDPADVVSVSVMPCTAKKGEAHRPADRGATYSSKIDGPVPNNDYVLTTREIGRLFRLRKIALPALDAQVPDDPLGESTGAAVLFGATGGVMEAALRTAYELASGGQELPKMEMSDIRGLQGVKSSRVCIPNPDGKGPGAVVRVGVVHGTAETRALLERMKLGDPAAQFDFVEVMACRGGCIGGGGQSKSDDALVLQKRMAHVYNLDEKSALRKSHDNPSIQKLYESEMGRPGSARSHALLHTHYADRSEQTT 627          
BLAST of EWM24352.1 vs. NCBI_GenBank
Match: gi|585105748|gb|EWM24352.1| (fe-only [Nannochloropsis gaditana])

HSP 1 Score: 805.053 bits (2078), Expect = 0.000e+0
Identity = 392/392 (100.00%), Postives = 392/392 (100.00%), Query Frame = 0
Query:    1 MRERHELFQVIDALEDQSRVKVAAVAPSVRVAMSEEFGLPPGRVSMGQIVAGLKLLGFDYVFDTNFSADLTIMEEGTELLSRLRKDPGAGPLPMFTSCCPGWINLVEKNYPELIPHLSSCKSPQGMMGALIKNVWAPRLERDPADVVSVSVMPCTAKKGEAHRPADRGATYSSKIDGPVPNNDYVLTTREIGRLFRLRKIALPALDAQVPDDPLGESTGAAVLFGATGGVMEAALRTAYELASGGQELPKMEMSDIRGLQGVKSSRVCIPNPDGKGPGAVVRVGVVHGTAETRALLERMKLGDPAAQFDFVEVMACRGGCIGGGGQSKSDDALVLQKRMAHVYNLDEKSALRKSHDNPSIQKLYESELGRPGSARSHALLHTHYADRSEQTT 392
            MRERHELFQVIDALEDQSRVKVAAVAPSVRVAMSEEFGLPPGRVSMGQIVAGLKLLGFDYVFDTNFSADLTIMEEGTELLSRLRKDPGAGPLPMFTSCCPGWINLVEKNYPELIPHLSSCKSPQGMMGALIKNVWAPRLERDPADVVSVSVMPCTAKKGEAHRPADRGATYSSKIDGPVPNNDYVLTTREIGRLFRLRKIALPALDAQVPDDPLGESTGAAVLFGATGGVMEAALRTAYELASGGQELPKMEMSDIRGLQGVKSSRVCIPNPDGKGPGAVVRVGVVHGTAETRALLERMKLGDPAAQFDFVEVMACRGGCIGGGGQSKSDDALVLQKRMAHVYNLDEKSALRKSHDNPSIQKLYESELGRPGSARSHALLHTHYADRSEQTT
Sbjct:    1 MRERHELFQVIDALEDQSRVKVAAVAPSVRVAMSEEFGLPPGRVSMGQIVAGLKLLGFDYVFDTNFSADLTIMEEGTELLSRLRKDPGAGPLPMFTSCCPGWINLVEKNYPELIPHLSSCKSPQGMMGALIKNVWAPRLERDPADVVSVSVMPCTAKKGEAHRPADRGATYSSKIDGPVPNNDYVLTTREIGRLFRLRKIALPALDAQVPDDPLGESTGAAVLFGATGGVMEAALRTAYELASGGQELPKMEMSDIRGLQGVKSSRVCIPNPDGKGPGAVVRVGVVHGTAETRALLERMKLGDPAAQFDFVEVMACRGGCIGGGGQSKSDDALVLQKRMAHVYNLDEKSALRKSHDNPSIQKLYESELGRPGSARSHALLHTHYADRSEQTT 392          
BLAST of EWM24352.1 vs. NCBI_GenBank
Match: gi|751615724|ref|WP_041083655.1| (ferredoxin [Thermotoga profunda])

HSP 1 Score: 400.593 bits (1028), Expect = 2.631e-132
Identity = 205/391 (52.43%), Postives = 269/391 (68.80%), Query Frame = 0
Query:    1 MRERHELFQVIDALEDQSRVKVAAVAPSVRVAMSEEFGLPPGRVSMGQIVAGLKLLGFDYVFDTNFSADLTIMEEGTELLSRLRKDPGAGPLPMFTSCCPGWINLVEKNYPELIPHLSSCKSPQGMMGALIKNVWAPRLERDPADVVSVSVMPCTAKKGEAHRPADRGATYSSKIDGPVPNNDYVLTTREIGRLFRLRKIALPALDAQVPDDPLGESTGAAVLFGATGGVMEAALRTAYELASGGQELPKMEMSDIRGLQGVKSSRVCIPNPDGKGPGAVVRVGVVHGTAETRALLERMKLGDPAAQFDFVEVMACRGGCIGGGGQSKSDDALVLQKRMAHVYNLDEKSALRKSHDNPSIQKLYESELGRPGSARSHALLHTHYADRSEQT 391
            + E   + +V++ LE   +V V   AP+ RVA+ EEFGL PG +S G++VA L+ LGFDYVFDTNF+ADLTIMEEG+E L RL+     GP PMFTSCCP WIN+ EK YP+ + +LSSCKSP  M+G L+K  +A +   DP  ++ VS+MPCTAKK +  RP         KI+  +P  D VLTTRE+G+L +++KI   +L  +  D+PLGESTGAA +FG TGGVMEAALRTAYEL  G + LPK+E + +RG +G+K + +   + DGK     ++V V HG A  R LL+++  G+  A +DF+E+MAC  GCIGGGGQ KS D  VL KRM  +Y +DE+S +RKSH+NPSI+KLYE  L  P S  SH LLHT Y DRS++T
Sbjct:  206 ITENSNVRRVLEELERHDKVLVVQTAPATRVAIGEEFGLEPGSISTGKMVAALRRLGFDYVFDTNFAADLTIMEEGSEFLERLK---NGGPFPMFTSCCPAWINMAEKIYPQFLKNLSSCKSPHQMLGPLVKTYFAKKKGIDPEKILVVSIMPCTAKKDDITRP-------QHKIED-MPGVDIVLTTRELGKLIKIKKIPYASLPDEEYDNPLGESTGAAAIFGVTGGVMEAALRTAYELGLG-KPLPKVEFTSVRGFEGIKEATI---DFDGKK----LKVAVAHGGANVRKLLDKIVAGE--AYYDFIEIMACPTGCIGGGGQPKSLDKNVLVKRMEAIYTIDERSTIRKSHENPSIKKLYEEFLEHPLSHVSHELLHTTYVDRSKKT 575          
BLAST of EWM24352.1 vs. NCBI_GenBank
Match: gi|327194990|gb|AEA34989.1| ([FeFe]-hydrogenase [Chlorella variabilis])

HSP 1 Score: 396.356 bits (1017), Expect = 5.506e-129
Identity = 221/422 (52.37%), Postives = 275/422 (65.17%), Query Frame = 0
Query:    3 ERHELFQVIDALEDQSRVKVAAVAPSVRVAMSEEFGLPPGRVSMGQIVAGLKLLGFDYVFDTNFSADLTIMEEGTELLSRL---------------------RKDPGA--------GPLPMFTSCCPGWINLVEKNYPELIPHLSSCKSPQGMMGALIKNVWAPRLERDPADVVSVSVMPCTAKKGEAHRPADRGATYSSKIDGPVPNNDYVLTTREIGRLFRLRKIALPALDAQVPDDPLGESTGAAVLFGATGGVMEAALRTAYELASGGQELPKMEMSDIRGLQGVKSSRVCIPNPDGKGPGAV----VRVGVVHGTAETRALLERMKLGDPAAQFDFVEVMACRGGCIGGGGQSKSDDALVLQKRMAHVYNLDEKSALRKSHDNPSIQKLYESELGRPGSARSHALLHTHYADRSEQT 391
            E  E  QV+DALE++ +V V   APSVRV++ EE GL PG V  GQ+VA  + LGFDYVFD++FSADLTIMEEGTELL RL                     ++  G         GPLPMFTSCCP WINLVEK+YPELIPHLSSCKSPQ MMGA++K+ WA +    P DV  V +MPCTAKK E  R   R        +    + DYV+TTRE G + R +KI +P+L  +  D+PLGE+TGAA LFGATGGVMEAA+RTAYE+A+ G+ LPK+E+  +RG++GVK + + +P  D      V    +RV V  G    R LL+R++ G+  A +DFVEVMAC GGCIGGGGQ K+ D   + KRM  +Y +D+  ALRKSH+NPSI K+Y   LG+PG   SH LLHTHY D S  T
Sbjct:  266 EHSEWRQVLDALENKQKVMVVQTAPSVRVSIGEELGLAPGTVETGQMVAAQRALGFDYVFDSDFSADLTIMEEGTELLQRLGAAWRAETAAQDAAAGSWAAAKQGHGEGEAHGHAPGPLPMFTSCCPAWINLVEKSYPELIPHLSSCKSPQMMMGAVVKHYWAKKKGLKPEDVCLVGIMPCTAKKHETERKEFRN-------ENGAYDCDYVITTREFGHMLRHKKIPMPSLKPEEFDNPLGEATGAAALFGATGGVMEAAIRTAYEIAA-GEPLPKLEVEAVRGVKGVKEATLTLPANDTTLKAGVAGKEIRVAVASGIGNARHLLQRIQAGE--AHYDFVEVMACPGGCIGGGGQPKTHDPDAVLKRMGAIYQVDKSLALRKSHENPSIHKIYAEFLGQPGGELSHKLLHTHYTDHSVDT 677          
BLAST of EWM24352.1 vs. NCBI_GenBank
Match: gi|500835435|ref|WP_012003383.1| (ferredoxin [Pseudothermotoga lettingae] >gi|157314808|gb|ABV33907.1| hydrogenase, Fe-only [Pseudothermotoga lettingae TMO] >gi|973045160|gb|KUK20437.1| Hydrogenase, Fe-only [Pseudothermotoga lettingae])

HSP 1 Score: 392.119 bits (1006), Expect = 5.722e-129
Identity = 200/391 (51.15%), Postives = 267/391 (68.29%), Query Frame = 0
Query:    1 MRERHELFQVIDALEDQSRVKVAAVAPSVRVAMSEEFGLPPGRVSMGQIVAGLKLLGFDYVFDTNFSADLTIMEEGTELLSRLRKDPGAGPLPMFTSCCPGWINLVEKNYPELIPHLSSCKSPQGMMGALIKNVWAPRLERDPADVVSVSVMPCTAKKGEAHRPADRGATYSSKIDGPVPNNDYVLTTREIGRLFRLRKIALPALDAQVPDDPLGESTGAAVLFGATGGVMEAALRTAYELASGGQELPKMEMSDIRGLQGVKSSRVCIPNPDGKGPGAVVRVGVVHGTAETRALLERMKLGDPAAQFDFVEVMACRGGCIGGGGQSKSDDALVLQKRMAHVYNLDEKSALRKSHDNPSIQKLYESELGRPGSARSHALLHTHYADRSEQT 391
            + E   + +V++ LE   +V V   AP+ RVA+ EEFGL PG +S G++VA L+ LGFDYVFDTNF+ADLTIMEEG+E L RL+     GP PMFTSCCP W+N+ EK YP+ + +LSS KSP  M+G L+K  +A +   DP +++ VS+MPCTAKK +  RP          ++G +P  D VLTTRE+G+L +++KI   +L  +  D PLGESTGAA +FG TGGVMEAALRTAYEL  G + LPK+E +++RG  G+K + +   + DGK     ++V V HG A  R LL+++  G+    +DFVE+MAC  GCIGGGGQ KS D  VL +RM  +Y +DE+S +RKSH+NPSI+KLYE  L  P S  SH LLHT Y DRS+++
Sbjct:  206 ITENSNVRKVLEELERHDKVLVVQTAPATRVALGEEFGLEPGSISTGKMVAALRKLGFDYVFDTNFAADLTIMEEGSEFLERLK---NGGPFPMFTSCCPAWVNMAEKLYPQFLKNLSSAKSPHQMLGPLVKTYFAKKKGIDPENILVVSIMPCTAKKDDIIRP-------QHMVNG-MPGVDIVLTTRELGKLIKMKKIPYASLPDEEYDSPLGESTGAAAIFGVTGGVMEAALRTAYELGLG-KPLPKVEFTNVRGFDGIKEATI---DFDGKQ----LKVAVAHGGANVRKLLDKITSGE--VYYDFVEIMACPAGCIGGGGQPKSLDKNVLTRRMEGIYTIDERSTIRKSHENPSIKKLYEEFLEHPLSHVSHELLHTTYVDRSKKS 575          
BLAST of EWM24352.1 vs. NCBI_GenBank
Match: gi|655460948|ref|WP_028843928.1| (ferredoxin [Pseudothermotoga elfii])

HSP 1 Score: 390.963 bits (1003), Expect = 1.362e-128
Identity = 199/391 (50.90%), Postives = 267/391 (68.29%), Query Frame = 0
Query:    1 MRERHELFQVIDALEDQSRVKVAAVAPSVRVAMSEEFGLPPGRVSMGQIVAGLKLLGFDYVFDTNFSADLTIMEEGTELLSRLRKDPGAGPLPMFTSCCPGWINLVEKNYPELIPHLSSCKSPQGMMGALIKNVWAPRLERDPADVVSVSVMPCTAKKGEAHRPADRGATYSSKIDGPVPNNDYVLTTREIGRLFRLRKIALPALDAQVPDDPLGESTGAAVLFGATGGVMEAALRTAYELASGGQELPKMEMSDIRGLQGVKSSRVCIPNPDGKGPGAVVRVGVVHGTAETRALLERMKLGDPAAQFDFVEVMACRGGCIGGGGQSKSDDALVLQKRMAHVYNLDEKSALRKSHDNPSIQKLYESELGRPGSARSHALLHTHYADRSEQT 391
            + E   + +V++ LE   +V V   AP+ RVA+ EEFGL PG +S G++VA L+ LGFDYVFDTNF+ADLTIMEEG+E L RL+     GP PMFT+CCP W+N+ EK YP+ + +LSS KSP  M+G L+K  +A +   DP +++ VS+MPCTAKK +  RP          ++G +P  D VLTTRE+G+L +++KI   +L  +  D PLGESTGAA +FG TGGVMEAALRTAYEL  G + LPK+E +++RG  G+K + +   + DGK     ++V V HG A  R LL+++  G+    +DFVE+MAC  GCIGGGGQ KS D  VL +RM  +Y +DE+S +RKSH+NPSI+KLYE  L  P S  SH LLHT Y DRS+++
Sbjct:  206 ITENSNVRKVLEELERHDKVLVVQTAPATRVALGEEFGLEPGSISTGKMVAALRKLGFDYVFDTNFAADLTIMEEGSEFLERLK---NGGPFPMFTTCCPAWVNMAEKLYPQFLKNLSSAKSPHQMLGPLVKTYFAKKKGIDPENILVVSIMPCTAKKDDIIRP-------QHMVNG-MPGVDIVLTTRELGKLIKMKKIPYASLPDEEYDSPLGESTGAAAIFGVTGGVMEAALRTAYELGLG-KPLPKVEFTNVRGFDGIKEATI---DFDGKQ----LKVAVAHGGANVRKLLDKITSGE--VYYDFVEIMACPAGCIGGGGQPKSLDKNVLTRRMEGIYTIDERSTIRKSHENPSIKKLYEEFLEHPLSHVSHELLHTTYVDRSKKS 575          
BLAST of EWM24352.1 vs. NCBI_GenBank
Match: gi|1130896535|ref|WP_075666576.1| (MULTISPECIES: ferredoxin [Thermosipho] >gi|1042794046|gb|ANQ54466.1| ferredoxin [Thermosipho sp. 1070] >gi|1129886863|gb|APT72908.1| ferredoxin [Thermosipho sp. 1063] >gi|1145630275|gb|OOC42350.1| ferredoxin [Thermosipho sp. 1074])

HSP 1 Score: 390.963 bits (1003), Expect = 1.589e-128
Identity = 202/380 (53.16%), Postives = 266/380 (70.00%), Query Frame = 0
Query:    9 QVIDALEDQSRVKVAAVAPSVRVAMSEEFGLPPGRVSMGQIVAGLKLLGFDYVFDTNFSADLTIMEEGTELLSRLRKDPGAGPLPMFTSCCPGWINLVEKNYPELIPHLSSCKSPQGMMGALIKNVWAPRLERDPADVVSVSVMPCTAKKGEAHRPADRGATYSSKIDGPVPNNDYVLTTREIGRLFRLRKIALPALDAQVPDDPLGESTGAAVLFGATGGVMEAALRTAYELASGGQELPKMEMSDIRGLQGVKSSRVCIPNPDGKGPGAVVRVGVVHGTAETRALLERMKLGDPAAQFDFVEVMACRGGCIGGGGQSKSDDALVLQKRMAHVYNLDEKSALRKSHDNPSIQKLYESELGRPGSARSHALLHTHYADRS 388
            +V+  +E + ++ VA  APSVRVA+ EEFG+ PG VS G++VA LK LGFDYVFDTNF+ADLTIMEEGTEL+ RL++    GP PMFTSCCPGWINL+EK YPE IP++SS KSPQ MM +++K  +A ++  DP D+V VSVMPCTAKK E  RP  +      +   P    DYV+TTRE+ +L ++++I    L  +  D+PLG STGA  +FG TGGVMEAALRTAYE+ +  Q LPK+E  D+RGL G+K + + I        G  +++ + HGTA  + LL+ ++  D    +DF+E+MAC GGCIGGGGQ KS D  +L+KR   +Y++DE S LR+SH+NP +QKLYE  L +P S  +H LLHTHY DRS
Sbjct:  211 KVLKLIERKEKILVAQTAPSVRVAIGEEFGMEPGSVSTGKMVASLKKLGFDYVFDTNFAADLTIMEEGTELIGRLKE---GGPFPMFTSCCPGWINLLEKEYPEFIPNVSSAKSPQQMMSSVVKTYFAKKIGVDPEDIVMVSVMPCTAKKDEIKRPQQKIKLEDGREIQP---TDYVITTRELAKLIKIKEINFAGLKDEEFDNPLGTSTGAGAIFGVTGGVMEAALRTAYEIITNKQ-LPKLEFDDVRGLNGIKEAEIDI-------EGKKIKIAIAHGTANVKKLLDDIR--DGKRYYDFIEIMACPGGCIGGGGQPKSLDPEILKKRAMAIYSIDELSTLRRSHENPDVQKLYEEFLEKPYSHIAHELLHTHYTDRS 574          
BLAST of EWM24352.1 vs. NCBI_GenBank
Match: gi|1147260564|ref|WP_077198749.1| (ferredoxin [Thermosipho affectus] >gi|1143352332|gb|ONN26517.1| ferredoxin [Thermosipho affectus])

HSP 1 Score: 390.578 bits (1002), Expect = 1.910e-128
Identity = 202/380 (53.16%), Postives = 266/380 (70.00%), Query Frame = 0
Query:    9 QVIDALEDQSRVKVAAVAPSVRVAMSEEFGLPPGRVSMGQIVAGLKLLGFDYVFDTNFSADLTIMEEGTELLSRLRKDPGAGPLPMFTSCCPGWINLVEKNYPELIPHLSSCKSPQGMMGALIKNVWAPRLERDPADVVSVSVMPCTAKKGEAHRPADRGATYSSKIDGPVPNNDYVLTTREIGRLFRLRKIALPALDAQVPDDPLGESTGAAVLFGATGGVMEAALRTAYELASGGQELPKMEMSDIRGLQGVKSSRVCIPNPDGKGPGAVVRVGVVHGTAETRALLERMKLGDPAAQFDFVEVMACRGGCIGGGGQSKSDDALVLQKRMAHVYNLDEKSALRKSHDNPSIQKLYESELGRPGSARSHALLHTHYADRS 388
            +V+  +E + ++ VA  APSVRVA+ EEFG+ PG VS G++VA LK LGFDYVFDTNF+ADLTIMEEGTEL+ RL++    GP PMFTSCCPGWINL+EK YPE IP++SS KSPQ MM +++K  +A ++  DP D+V VSVMPCTAKK E  RP  +      +   P    DYV+TTRE+ +L ++++I    L  +  D+PLG STGA  +FG TGGVMEAALRTAYE+ +  Q LPK+E  D+RGL G+K + + I        G  +++ + HGTA  + LL+ ++  D    +DF+E+MAC GGCIGGGGQ KS D  +L+KR   +Y++DE S LR+SH+NP +QKLYE  L +P S  +H LLHTHY DRS
Sbjct:  211 KVLKLIERKEKILVAQTAPSVRVAIGEEFGMEPGSVSTGKMVASLKKLGFDYVFDTNFAADLTIMEEGTELIGRLKE---GGPFPMFTSCCPGWINLLEKEYPEFIPNVSSAKSPQQMMSSVVKTYFAKKIGVDPEDIVMVSVMPCTAKKDEIKRPQQKIKLEDGREIQP---TDYVITTRELAKLIKIKEINFAGLKDEEFDNPLGTSTGAGAIFGVTGGVMEAALRTAYEIITNKQ-LPKLEFDDVRGLNGIKEAEIDI-------EGKKIKIAIAHGTANVKKLLDDIR--DGRRYYDFIEIMACPGGCIGGGGQPKSLDPEILKKRAMAIYSIDELSTLRRSHENPDVQKLYEEFLEKPYSHIAHELLHTHYTDRS 574          
BLAST of EWM24352.1 vs. NCBI_GenBank
Match: gi|1148542041|ref|WP_077289989.1| (ferredoxin [Thermosipho sp. 1223] >gi|1145633419|gb|OOC45452.1| ferredoxin [Thermosipho sp. 1223])

HSP 1 Score: 388.652 bits (997), Expect = 1.093e-127
Identity = 202/380 (53.16%), Postives = 266/380 (70.00%), Query Frame = 0
Query:    9 QVIDALEDQSRVKVAAVAPSVRVAMSEEFGLPPGRVSMGQIVAGLKLLGFDYVFDTNFSADLTIMEEGTELLSRLRKDPGAGPLPMFTSCCPGWINLVEKNYPELIPHLSSCKSPQGMMGALIKNVWAPRLERDPADVVSVSVMPCTAKKGEAHRPADRGATYSSKIDGPVPNNDYVLTTREIGRLFRLRKIALPALDAQVPDDPLGESTGAAVLFGATGGVMEAALRTAYELASGGQELPKMEMSDIRGLQGVKSSRVCIPNPDGKGPGAVVRVGVVHGTAETRALLERMKLGDPAAQFDFVEVMACRGGCIGGGGQSKSDDALVLQKRMAHVYNLDEKSALRKSHDNPSIQKLYESELGRPGSARSHALLHTHYADRS 388
            +V+  +E + ++ VA  APSVRVA+ EEFG+ PG VS G++VA LK LGFDYVFDTNF+ADLTIMEEGTEL+ RL++    GP PMFTSCCPGWINL+EK YPE IP++SS KSPQ MM +++K  +A ++  DP D+V VSVMPCTAKK E  RP  +      +   P    DYV+TTRE+ +L ++++I    L  +  D+PLG STGA  +FG TGGVMEAALRTAYE+ +  Q LPK+E  ++RGL G+K + V I        G  +++ + HGTA  + LL+ ++  D    +DF+E+MAC GGCIGGGGQ KS D  +L+KR   +Y++DE S LR+SH+NP +QKLYE  L +P S  +H LLHTHY DRS
Sbjct:  211 KVLKLIERKEKILVAQTAPSVRVAIGEEFGMEPGSVSTGKMVASLKKLGFDYVFDTNFAADLTIMEEGTELIGRLKE---GGPFPMFTSCCPGWINLLEKEYPEFIPNVSSAKSPQQMMSSVVKTYFAKKIGVDPEDIVMVSVMPCTAKKDEIKRPQQKIKLEDGREIQP---TDYVITTRELAKLIKIKEINFAGLKDEEFDNPLGTSTGAGAIFGVTGGVMEAALRTAYEIITNKQ-LPKLEFDNVRGLNGIKEAEVDI-------EGKKLKIAIAHGTANVKKLLDDIR--DGRRYYDFIEIMACPGGCIGGGGQPKSLDPEILKKRAMAIYSIDELSTLRRSHENPDVQKLYEEFLEKPYSHIAHELLHTHYTDRS 574          
BLAST of EWM24352.1 vs. NCBI_GenBank
Match: gi|501004861|ref|WP_012057804.1| (ferredoxin [Thermosipho melanesiensis] >gi|149793997|gb|ABR31445.1| hydrogenase, Fe-only [Thermosipho melanesiensis BI429] >gi|1129888460|gb|APT74504.1| ferredoxin [Thermosipho melanesiensis] >gi|1145624329|gb|OOC36460.1| ferredoxin [Thermosipho melanesiensis] >gi|1145625149|gb|OOC37278.1| ferredoxin [Thermosipho melanesiensis] >gi|1145625903|gb|OOC38030.1| ferredoxin [Thermosipho melanesiensis] >gi|1145629169|gb|OOC41258.1| ferredoxin [Thermosipho melanesiensis] >gi|1145631187|gb|OOC43253.1| ferredoxin [Thermosipho melanesiensis])

HSP 1 Score: 387.882 bits (995), Expect = 2.489e-127
Identity = 202/380 (53.16%), Postives = 266/380 (70.00%), Query Frame = 0
Query:    9 QVIDALEDQSRVKVAAVAPSVRVAMSEEFGLPPGRVSMGQIVAGLKLLGFDYVFDTNFSADLTIMEEGTELLSRLRKDPGAGPLPMFTSCCPGWINLVEKNYPELIPHLSSCKSPQGMMGALIKNVWAPRLERDPADVVSVSVMPCTAKKGEAHRPADRGATYSSKIDGPVPNNDYVLTTREIGRLFRLRKIALPALDAQVPDDPLGESTGAAVLFGATGGVMEAALRTAYELASGGQELPKMEMSDIRGLQGVKSSRVCIPNPDGKGPGAVVRVGVVHGTAETRALLERMKLGDPAAQFDFVEVMACRGGCIGGGGQSKSDDALVLQKRMAHVYNLDEKSALRKSHDNPSIQKLYESELGRPGSARSHALLHTHYADRS 388
            +V+  LE + ++ VA  APSVRVA+ EEFG+ PG VS G++VA LK LGFDYVFDTNF+ADLTI+EEGTEL+ R ++    GP PMFTSCCPGWINL+EK YPE IP++SS KSPQ MM +++K  +A ++  DP D++ VSVMPCTAKK E  RP  +      +    +   DYV+TTRE+ +L +L++I    L     D+PLG STGAA +FG TGGVMEAALRTAYE+ +  +ELPK+E + +RGL G++ + + I        G  V+V + HGTA  R LL+ ++  D    +DF+E+MAC GGCIGGGGQ KS D  +L+KR   +Y++DE S LRKSH+NP IQKLYE  L +P S  +H LLHT+Y DR+
Sbjct:  211 KVLKLLERKEKILVAQTAPSVRVALGEEFGMEPGSVSTGKMVASLKKLGFDYVFDTNFAADLTIVEEGTELVERFKE---GGPFPMFTSCCPGWINLLEKIYPEFIPNVSSAKSPQQMMSSVVKTYFAKKIGVDPEDIIMVSVMPCTAKKDEIKRPQQKIKLEDGR---EIQTTDYVITTRELAKLIKLKEINFAGLQDAEFDNPLGTSTGAAAIFGVTGGVMEAALRTAYEVIT-NKELPKLEFTAVRGLDGIREAEIDI-------EGKKVKVAIAHGTANVRKLLDDIR--DGKRYYDFIEIMACPGGCIGGGGQPKSLDPDILKKRAMAIYSIDELSTLRKSHENPDIQKLYEEFLEKPNSHIAHELLHTYYTDRT 574          
The following BLAST results are available for this feature:
BLAST of EWM24352.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553187038|ref|XP_005854537.1|0.000e+099.74Fe-Fe hydrogenase [Nannochloropsis gaditana CCMP52... [more]
gi|585105748|gb|EWM24352.1|0.000e+0100.00fe-only [Nannochloropsis gaditana][more]
gi|751615724|ref|WP_041083655.1|2.631e-13252.43ferredoxin [Thermotoga profunda][more]
gi|327194990|gb|AEA34989.1|5.506e-12952.37[FeFe]-hydrogenase [Chlorella variabilis][more]
gi|500835435|ref|WP_012003383.1|5.722e-12951.15ferredoxin [Pseudothermotoga lettingae] >gi|157314... [more]
gi|655460948|ref|WP_028843928.1|1.362e-12850.90ferredoxin [Pseudothermotoga elfii][more]
gi|1130896535|ref|WP_075666576.1|1.589e-12853.16MULTISPECIES: ferredoxin [Thermosipho] >gi|1042794... [more]
gi|1147260564|ref|WP_077198749.1|1.910e-12853.16ferredoxin [Thermosipho affectus] >gi|1143352332|g... [more]
gi|1148542041|ref|WP_077289989.1|1.093e-12753.16ferredoxin [Thermosipho sp. 1223] >gi|1145633419|g... [more]
gi|501004861|ref|WP_012057804.1|2.489e-12753.16ferredoxin [Thermosipho melanesiensis] >gi|1497939... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6330rna6330Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications