rna6330, rna6330 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6330
Unique Name	rna6330
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2757
Alignment location	CM002468.1:269562..272524 +

Link to JBrowse

Properties


Property Name	Value
Product	fe-only
Orig transcript id	gnl\|cribi\|Naga_100163g7.7190.mrna
Orig protein id	gnl\|cribi\|Naga_100163g7.7190
Gene	HYDA1
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:269562..272524 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
HYDA1	gene6118	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6330	rna6330-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24352.1	cds6315	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:269562..272524+
coding sequence from alignment at CM002468.1:269562..272524+

mRNA sequence

>rna6330 ID=rna6330|Name=rna6330|organism=Nannochloropsis gaditana|type=mRNA|length=2757bp
GCGGCTCTGGAATTGATTTTGAGATGGCATTTTTGGGGGTGGGTGCGATG
TCGGAAAAAGCAGAGCTTCCGCTGCTTGCGGTGGGACGGGGGCGTAAGAA
TGACAGTCTGGGCCGCGCCAAGTTGACAGGAGCGAATGCAGACGATGTGC
CGGTTCCACGGTGCGCAATAACCCGCTTCGGGAGACGCAGGCCGCGCATA
GCCCCCTAAATTTTCATTTGTGTCCGTAGGATGTGTTGGTGACGGAATAT
TTGTCAGAATATGGCCTTGAAAAAAGAAGAAAGTAGAACATTCAGGCGAG
GGTCCTGGAAACGAGCGACATGCACGACATCCTTTTGAACCTGCTAGCAT
CGTTTAAATTTCCTTTCCCACGACCCGTGCCACCCCCGTCGGCAATACAG
GCAATGCCCGCACGGACACGGGCCATGCCAACGCAGCGCAAAGGCTTTGA
AAGACATTCGTTAATACAGGCATCGCGGTCAGAACAAGCCCTTTGGCGCT
GAGTTGAAGCTCAGAACGTCACGAAAGAAAGGAAGAATGCCGCCCAGTGC
AGCGTTCAGACGTTTACGTACTCCATGTCTCTCGCTCCTTGCTTCTTCTT
TTTCGTCGGCTACCGCCAAGGCGCCTCCCTCGACGGGGCTGCACCGCCTC
CTCATTGGCTTGGTGGGGGAAATGAACGCGGGCAAGAGCACGTGTTTGAA
TGCACTCACCCAGCAGGCCACCTCCATTGTCGATGCCACTCCTGGCACCA
CTGCCGACGTCAAAGCTGCACTCTTGGAACTGCACGGCCTGGGCCCCGTG
AAGCTCCTCGACACGGCGGGTATCGATGACGTGGGGGCGTTGGGAGAGAA
GAAAAAAGAGCGGACCTACCGGGCCTTGAAGGAAATTGACGTGGCCTTGG
TGGTGATTGATCCGTTTTCCAAGATCCTGTCGAGTTCCTCGTCCCAAAGG
CCTTATGATGGAACGGGAAGGGAAGGACGGCGCCGTGATGAGGGAGGAGG
TGGGATAGGAGGGGATATGTCCGAAAGCGCAATGGCAACGCCACCGTACA
CAGCCTGTCAGGCGGATCCTTCCTCGCTTTCCCTCCTCTCCTCCCTCGTG
CAGGCCATGGACCGCCGGGGACGCCGCGCCATGCTCGTCTTCAACTTGAA
GAAGGAGAGAGAGGAGGAGGTGGCTCGGGAGGGAAGGACGAGTCTTGGGG
GGGGGGGGAGGAACGGGCGGGTGAGGCAGGCGCTAGCTCTCCGTGGGTGA
GGGAACTGATTAATTCCATCGAAGAATGTATTCGGAGGGATATCAAGGGA
CAAAAATCGTACTCGTTAAGAGGAGAAGAGGGAGGAGGGGGGGGACAAGG
CGGGGGACAAGGTAGGAGGGGGAGGCCGATCGGCCCGTCCACGGCCAGTG
CAAGCGCCCCGGTCAGAAGGAACCTCCCTTTCTTCACGACAGATGGCGAG
CAGGAGGGCTCCCATTTCGTCCTCCTCCCTTCCTTCACGGCGGACTTCAC
AGCCCCCGGCGCGGGAAAGGCCCTGGCCTTACACCTACTTCACTCCCTCC
GCCCGTCCTCCCGCCCTGCCTCCGCCCCCTCCTTGCCCACCGAGGACCCC
GAACCTCCCCTCCTCCCCCTCCAATATCATCACGACAAAATCGTCCTCCT
CAACATACCCATGGACGCCGAGACCCCCCTCACCCGCCTCCTGCGGCCTC
AGGCCCTCCTCCAAGCCTTCTGCCTCCACCACTACATCCCAACGATCGCC
TACCGGATGAACCTGAGCAAAGCCCGGTCCTTCCCTCCTTCCTCGCCCTC
CCCCTCCGTCTCCTCCATGCAATCACCCTACGAGGAGGAGAAAGCCAAGT
TCCTCTCCCTCCTCTCCCTCCTCCCTCCCGGTAGCCTGGTTGTCACCGAC
TCTCAAGCCATCGACGTCGTCCACGCCTGGACCTTGCCGCCACTTGGCGG
GGACGAATCATTTACTAAGCTTCAAAAGCCGGTGGACATTACCACCTTTA
GCATCGTCATGATTCAGCACATGAGCGGGGGAAGGTTGGGGGCCTTTGTG
GAGGGTATGACCCGGCTGGTGGAGATGGAGGAGGAGGCAAGGCAGGCCAA
AGAAGGGAAAGAAGCGAGGGTGTTGATAGCGGAGGCATGCAATCATGTCC
GGATCCCAGAGGCGTGTGACGATATTGGCACGGTGCAGCTACCTCAGGCC
CTTCGGAGGGCGTTTCCACACCTTGGTTTCCATATTCATCACGCCTACGG
CCGAGAATTTCCCTGGCAGGCTTTGCAAGACGGAAGGTACGACGTAGTGG
TCCATTGCGGCGGCTGCATGATCGACAGGCAAAAGGTGCGGGCCCGCATG
GAAGAATGTGCCGACGGGGGGGTTGCCACGACAAACTATGGCCTTCTGTT
GGCCTACGCGGCTGCACCGCAGGCCATGTTGAGGGCGGTACGTCCTTTTG
GTGTGGAAATACCAGAGATATTGAGCAAGCATGCAACAATGGTGGAACAG
GATGGAGATGTAGGGCGGAGGGCATCGAAATCCGGGTCGTCTTGCCTGAA
CCCCGTGAGTGCCTTGTCTCCTCTGACTGACATGAAAGAATGAGTGTAAA
AAAGTCGCGATTTTACAGTGTGTTGCGCGCCATTGACGAATATACTTAAG
AAGTGAAGCTGCCTCAAATCTGATTTACAGCCAAAGCAGGCGAATTAAAT
GCACAAGCTTGTTTCGGTTTTCTTTTCCTTCCAAGTCGTATTCCTTAAAT
CAAGTCG

protein sequence of rna6330

>rna6330-protein ID=rna6330-protein|Name=rna6330|organism=Nannochloropsis gaditana|type=polypeptide|length=392bp
MRERHELFQVIDALEDQSRVKVAAVAPSVRVAMSEEFGLPPGRVSMGQIV
AGLKLLGFDYVFDTNFSADLTIMEEGTELLSRLRKDPGAGPLPMFTSCCP
GWINLVEKNYPELIPHLSSCKSPQGMMGALIKNVWAPRLERDPADVVSVS
VMPCTAKKGEAHRPADRGATYSSKIDGPVPNNDYVLTTREIGRLFRLRKI
ALPALDAQVPDDPLGESTGAAVLFGATGGVMEAALRTAYELASGGQELPK
MEMSDIRGLQGVKSSRVCIPNPDGKGPGAVVRVGVVHGTAETRALLERMK
LGDPAAQFDFVEVMACRGGCIGGGGQSKSDDALVLQKRMAHVYNLDEKSA
LRKSHDNPSIQKLYESELGRPGSARSHALLHTHYADRSEQTT

mRNA from alignment at CM002468.1:269562..272524+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6330 ID=rna6330|Name=rna6330|organism=Nannochloropsis gaditana|type=mRNA|length=2963bp|location=Sequence derived from alignment at CM002468.1:269562..272524+ (Nannochloropsis gaditana)
aaaggaaattTAAACGATGCTAGCAGGTTCAAAAGGATGTCGTGCATGTC
GCTCGTTTCCAGGACCCTCGCCTGAATGTTctactttcttcttttttcaa
gGCCATATTCTGACAAATATTCCGTCACCAACACATCCTACGGACACAAA
TGAAAATTTAGGGGGCTATGCGCGGCCTGCGTCTCCCGAAGCGGGTTATT
GCGCACCGTGGAACCGGCACATCGTCTGCATTCGCTCCTGTCAACTTGGC
GCGGCCCAGACTGTCATTCTTACGCCCCCGTCCCACCGCAAGCAGCGGAA
GCTCTGCTTTTTCCGACATCGCACCCACCCCCAAAAATGCCATCTCAAAA
TCAATTCCAGAGCCGCACGAGGAGCTTGTGAACGTGGAAGTCAATGGACG
GAGTATTGCCGTTCCAGCGTACTCGACCTTATTGGAAGCCGCCCGGGCCG
CGGGGGCCTTCGTGCCTACCTTGTGTGCACACCCTTCAATTCCTGCGCGC
GCCACGTGCCGCATATGTTTAGTGGAGCTCGAGACCGACCAcggggtgaa
ggaggtggtAGGCCCCGCGTCGGTCACGGACGCGAGGAGGGTCACGAAGC
TTGTGCCCGTCACAAAGTTGGTCCCTGCCTGCGTGACGCCTGTCAAGGAG
GGTTGTCGCATCCACACGCATTCTCCCGACGTGCTGAGCAATGTACGCTT
CGTGCTTCAGCTCCTACGGGCCAAGCATCCCAACACCTGTCAGACATGTG
ACGCCGATGGGAATTGCACTTTTCAAGACTTGTTGTATCGGTATCAGGTA
ATTCGATTCGCTATTTACCAGCCCTCCCGTGGTATCGCGTGCACCTGTGA
AAATACATGGATTATGCACTCTATGGTCTGTGTCTCCACTCCTTTCGAGA
GGCCGGCTCATTTAAAAACCAACACgtacctctccccctcctcctgcgcc
tcctccatctttcccaGGTAGAAGACGTCGCTCCCCCCGGAGTCCGGCGC
ACCTTCACGCACCACCATGAATGGGACGGCGGGGCCAGCATTGCCGCCGC
TTCGGACAGCCAGGGCCCGATGCCCTCCGAGGAGGATCCTTTCAATGCCA
TTACGTTCGATCCGGACAAGTGTGTCAAATGCGGGCGATGCGTGGCGATC
TGCCAGCGGATccaaggggtgggggcgaTCGGTTTCGTCGGGCGAGGGGT
CGATGAGCATGTGTCGACCACGCGGGGGCTGCCGTTGGACCGGACCAAGT
GTATCGAGTGCGGGCAGgtaccggggggggggggaacgtaGCACAGTGAG
GGGGTTTCCTGTGTGTGAATGGCTGTTGTATTTCGGTGGGTCGTGGATCT
TCTCTCCGGGGACATGACCCGAGGGGAGCGTCCCGAAGGGAACTTCGGAG
CACGCGCCGTCCAGTTGCCCACAGACCCGCGTaccgcttctcctttccgc
ccccctccagtGCGCCGCCGTTTGCCCCACGGGGGCCATGCGGGAGCGAC
ACGAGCTCTTCCAGGTGATAGACGCCTTGGAGGATCAAAGCCGGGTGAAA
GtcgcggccgtggcccccTCCGTACGCGTGGCCATGAGCGAGGAATTCGG
CCTGCCGCCCGGGCGCGTCTCCATGGGGCAAATTGTCGCGGGCTTGAAAC
TCTTGGGCTTCGACTATGTCTTCGACACGAATTTTTCCGCTGACTTGACC
ATCATGGAGGAAGGCACAGAGCTCCTGTCGCGGCTGCGGAAAGACCCGGG
GGCAGGGCCCCTTCCGATGTTCACTTCTTGTTGCCCGGGTTGGATCAACC
TGGTCGAAAAAAACTACCCGGAGTTGATCCCTCACCTCTCCAGCTGCAAG
TCACCGCAGGGGATGATGGGCGCTTTGATCAAGAATGTATGGGCGCCGCG
CTTGGAGCGAGACCCGGCGGACGTGGTCTCGGTCAGCGTCATGCCGTGCa
cggcgaagaaaggggaagcccACCGCCCGGCCGACAGGGGGGCCACCTAC
TCATCCAAGATCGACGGTCCCGTGCCCAACAATGACTACGTCTTGACCAC
GCGGGAAATCGGGCGCTTGTTTCGCCTGCGGAAAATAGCGCTGCCTGCCT
TGGATGCGCAAGTGCCCGATGACCCCTTGGGAGAGAGCACGGGTGCGGCG
GTCCTTTTCGGCGCGACCGGCGGGGTGATGGAAGCGGCGTTGAGGACGGC
TTATGAATTGGCCTCGGGGGGACAAGAACTCCCAAAGATGGAAATGAGCG
ACATTCGGGGATTGCAAGGGGTCAAATCCTCCCGGGTTTGCATCCCCAAT
CCGGATGGGAAAGGACCAGGGGCGGTGGTACGTGTTGGTGTCGTGCATGG
AACCGCGGAGACACGGGCATTGTTGGAAAGAATGAAGCTGGGGGATCCAG
CCGCTCAATTCGATTTTGTGGAGGTGATGGCTTGCCGGGGAGGCTGCatt
gggggaggtgggcagAGCAAGAGCGACGACGCCTTGGTCCTGCAGAAAAG
GATGGCACACGTGTACAATTTGGACGAGAAGAGCGCGCTGAGGAAAAGCC
ATGACAACCCCAGCATCCAGAAACTCTACGAAAGCGAACTGGGAAGGCCG
GGAAGTGCCCGGAGCCATGCATTGTTGCATACACATTACGCAGACCGGTC
CGAGCAAACAACATGATTTGAGCATAAGACCTCGGGAAAGAGGCTGAACG
ATATGTTGCATCTGCTTTATTGGGGCAAGATTTTGAAAAGAATGAATGAA
TTTAGAAAACAAACCACGTAGCAAGCGGATTCTGCACGGGCCTTGGTGCA
GAAACAAACAAAGCTTTCAATAAAGCACTTGGAGCAATTTTTCACGCTGT
CCATCACGTGTGCTTGTCATTCAATTCTGTGTCTGGTTATCTCTCCCAAA
TATCACCCCTTTCTTCTGTACAATATGCCTACTGATCTTCTCGTCTATAT
CAATGACACATGC

Coding sequence (CDS) from alignment at CM002468.1:269562..272524+

>rna6330 ID=rna6330|Name=rna6330|organism=Nannochloropsis gaditana|type=CDS|length=1179bp|location=Sequence derived from alignment at CM002468.1:269562..272524+ (Nannochloropsis gaditana)
ATGCGGGAGCGACACGAGCTCTTCCAGGTGATAGACGCCTTGGAGGATCA
AAGCCGGGTGAAAGtcgcggccgtggcccccTCCGTACGCGTGGCCATGA
GCGAGGAATTCGGCCTGCCGCCCGGGCGCGTCTCCATGGGGCAAATTGTC
GCGGGCTTGAAACTCTTGGGCTTCGACTATGTCTTCGACACGAATTTTTC
CGCTGACTTGACCATCATGGAGGAAGGCACAGAGCTCCTGTCGCGGCTGC
GGAAAGACCCGGGGGCAGGGCCCCTTCCGATGTTCACTTCTTGTTGCCCG
GGTTGGATCAACCTGGTCGAAAAAAACTACCCGGAGTTGATCCCTCACCT
CTCCAGCTGCAAGTCACCGCAGGGGATGATGGGCGCTTTGATCAAGAATG
TATGGGCGCCGCGCTTGGAGCGAGACCCGGCGGACGTGGTCTCGGTCAGC
GTCATGCCGTGCacggcgaagaaaggggaagcccACCGCCCGGCCGACAG
GGGGGCCACCTACTCATCCAAGATCGACGGTCCCGTGCCCAACAATGACT
ACGTCTTGACCACGCGGGAAATCGGGCGCTTGTTTCGCCTGCGGAAAATA
GCGCTGCCTGCCTTGGATGCGCAAGTGCCCGATGACCCCTTGGGAGAGAG
CACGGGTGCGGCGGTCCTTTTCGGCGCGACCGGCGGGGTGATGGAAGCGG
CGTTGAGGACGGCTTATGAATTGGCCTCGGGGGGACAAGAACTCCCAAAG
ATGGAAATGAGCGACATTCGGGGATTGCAAGGGGTCAAATCCTCCCGGGT
TTGCATCCCCAATCCGGATGGGAAAGGACCAGGGGCGGTGGTACGTGTTG
GTGTCGTGCATGGAACCGCGGAGACACGGGCATTGTTGGAAAGAATGAAG
CTGGGGGATCCAGCCGCTCAATTCGATTTTGTGGAGGTGATGGCTTGCCG
GGGAGGCTGCattgggggaggtgggcagAGCAAGAGCGACGACGCCTTGG
TCCTGCAGAAAAGGATGGCACACGTGTACAATTTGGACGAGAAGAGCGCG
CTGAGGAAAAGCCATGACAACCCCAGCATCCAGAAACTCTACGAAAGCGA
ACTGGGAAGGCCGGGAAGTGCCCGGAGCCATGCATTGTTGCATACACATT
ACGCAGACCGGTCCGAGCAAACAACATGA

Synonyms

Publications