rna6323, rna6323 (mRNA) Nannochloropsis gaditana

Overview
Namerna6323
Unique Namerna6323
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length739
Alignment locationCM002468.1:248404..249363 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100246g2.10068.mrna
Orig protein idgnl|cribi|Naga_100246g2.10068
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:248404..249363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100246g2gene6112Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6323rna6323-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24373.1cds6308Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6323 ID=rna6323|Name=rna6323|organism=Nannochloropsis gaditana|type=mRNA|length=739bp
GCTGACTTTTCGTGTATTTGTACGACTTACATACAAGGAGTCGTATTTTG
CCGTGGCACCTTGTATTTTGCCGAAACTCAACTCATTACGATGCCTCCCT
CATACCACAGAAACCAAAGCCACGATGAAGTCTTTTGCTGCCCCTATTTT
TCTCCTCGCTGCCACCCTCCTCCAGCTTGCTGTCGCAACCAAATGCCCAT
CCGGCCTGACGTGCTCTGGTAATTCCAAAGAAGAGGCGTTTCTGGTGGAT
GGTATCACTTCGAACGCCTGTTTTGTCGTCAGCAAGTCTTACTGCCCCTT
CTGCATGCGGGCCAAGAGCACCCTGGCCTCCGTGGGCGCAGATTGTGAGA
TCATCGAACTCGACCAACGTGCGGACGGGCCCGCCCTCCAACGTGTCCTG
GCCGACATGACGGGTCGCCGCACCGTGCCCAACGTCTTCATCGGTGGGAA
AAGCATCGGCGGGGCGGATGACACGTTGCTTCTGCATTCCAAGGGAGAGC
TCAAGCGCCTCCTCGTGTCGGCAAAGGACCTTTAAATTTGCCAGCGGTGA
GGGGCCGCTGTGTTAGCCTCTGAAGTCAGCGTAGCGGAATGGAGTCATGG
TGGGAGTGTTGTTCGAGATACTTGATTGCTAAGGGATGTACGGGCTGTTT
GTAATCATAAGAATCAATGAAAAATGGTCCGACGATTCCAACGGCATGAG
TTAAAAAAGTAAAAAATGCAAGACGCAGAGAAGGACTGG
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protein sequence of rna6323

>rna6323-protein ID=rna6323-protein|Name=rna6323|organism=Nannochloropsis gaditana|type=polypeptide|length=124bp
MSPSDPNDPRPICKPQVNQASYYSEYYKAHGFKFQGGLSVTGLFQAFFGP
GKPILPLSCVYSILHSRTHLSPTPPEGGKEKDSTLWAKSCVSDYLNFIRE
CRESDYCDGGRWSAVGDPAYNGCK
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mRNA from alignment at CM002468.1:248404..249363+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6323 ID=rna6323|Name=rna6323|organism=Nannochloropsis gaditana|type=mRNA|length=960bp|location=Sequence derived from alignment at CM002468.1:248404..249363+ (Nannochloropsis gaditana)
TTCGTGATGCTGACAAGACTCGCGCATCCATTGACCGGGAAGAACATGCA
GGACCTGTTTCGGGCGGACCGGACACAAATCGCGCGGTGGACGAACGCCT
GCCTCGGATGTCTCCATCTGACCCTAACGATCCTAGGCCGATATGCAAGC
CCCAAGTGAATCAAGCTTCGTACTATTCCGGTCCGTGATCCGTCCGCTTC
CACTCTGAAACACCCTCTTACACACTCTAACTCACCCATATTGACCCCGA
CACCGACTTCGACAGAGTACTACAAGGCTCACGGCTTCAAGTTCCAAGGC
GGCTTGAGCGTCACGGGCCTCTTCCAGGCTTTCTTCGGCCCAGGTAAGCC
CATACTTCCTCTCTCATGCGTGTATTCCATCCTCCATTCACGAACCCACT
TGTCTCCCACACCACCAGAGggtggcaaggagaaggactcgACGCTCTGG
GCCAAATCTTGCGTTTCCGACTACCTCAATTTCATCCGAGAGTGCAGGGA
GTCTGATTACTGTGACGGTGGGCGCTGGTCTGCTGTCGGGGACCCGGCCT
ACAACGGGTGCAAGTAGAATCTTGTCTGCGCCTTCGACCCCCTCCAATAC
CTCAGCCAGGAACAGCTCCACTTCAACACGGGCATCACCCGCGTCCGAGT
GACGGGTGGGCGTTTACGCATCTCTACAACCTCTGGGAGAGCCTTCAATT
CAAGACCTTGAAGAGAATTGGGTGCACCCCGTTTGTGAAGCACATCATGG
TCTGCGTCCTTCTCACGAACATGCGCACCTGCCTCCGCGGGCAAAATCAG
ATCTCGACATACTTCCAAacctctccccccacacTCGACGAATACCAGGA
CTTGTTCAAGCCCATCCTCAGCCGCATCGAAAACCACTTACAGGACAGGA
CCTCGACGACGCGCTAAACGCCGTCTCCTGAAAAAAGAAACCAACCAAAA
AGGAAATCCA
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Coding sequence (CDS) from alignment at CM002468.1:248404..249363+

>rna6323 ID=rna6323|Name=rna6323|organism=Nannochloropsis gaditana|type=CDS|length=750bp|location=Sequence derived from alignment at CM002468.1:248404..249363+ (Nannochloropsis gaditana)
ATGTCTCCATCTGACCCTAACGATCCTAGGCCGATATGCAAGCCCCAAGT
GAATCAAGCTTCGTACTATTCCGAGTACTACAAGGCTCACGGCTTCAAGT
TCCAAGGCGGCTTGAGCGTCACGGGCCTCTTCCAGGCTTTCTTCGGCCCA
GGTAAGCCCATACTTCCTCTCTCATGCGTGTATTCCATCCTCCATTCACG
AACCCACTTGTCTCCCACACCACCAGAGggtggcaaggagaaggactcgA
CGCTCTGGGCCAAATCTTGCGTTTCCGACTACCTCAATTTCATCCGAGAG
TGCAGGGAGTCTGATTACTGTGACGGTGGGCGCTGGTCTGCTGTCGGGGA
CCCGGCCTACAACGGGTGCAAGTAGATGTCTCCATCTGACCCTAACGATC
CTAGGCCGATATGCAAGCCCCAAGTGAATCAAGCTTCGTACTATTCCGAG
TACTACAAGGCTCACGGCTTCAAGTTCCAAGGCGGCTTGAGCGTCACGGG
CCTCTTCCAGGCTTTCTTCGGCCCAGGTAAGCCCATACTTCCTCTCTCAT
GCGTGTATTCCATCCTCCATTCACGAACCCACTTGTCTCCCACACCACCA
GAGggtggcaaggagaaggactcgACGCTCTGGGCCAAATCTTGCGTTTC
CGACTACCTCAATTTCATCCGAGAGTGCAGGGAGTCTGATTACTGTGACG
GTGGGCGCTGGTCTGCTGTCGGGGACCCGGCCTACAACGGGTGCAAGTAG
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Synonyms
Publications