EWM24373.1, cds6308 (CDS) Nannochloropsis gaditana

Overview
NameEWM24373.1
Unique Namecds6308
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:248511..248583 +
Alignment locationCM002468.1:248669..248970 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24373.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100246g2.10068.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:248511..248583 +
CM002468.1supercontigCM002468.1:248669..248970 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24373.1 vs. NCBI_GenBank
Match: gi|585105770|gb|EWM24373.1| (hypothetical protein Naga_100246g2 [Nannochloropsis gaditana])

HSP 1 Score: 259.225 bits (661), Expect = 9.929e-88
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 
Query:    1 MSPSDPNDPRPICKPQVNQASYYSEYYKAHGFKFQGGLSVTGLFQAFFGPGKPILPLSCVYSILHSRTHLSPTPPEGGKEKDSTLWAKSCVSDYLNFIRECRESDYCDGGRWSAVGDPAYNGCK 124
            MSPSDPNDPRPICKPQVNQASYYSEYYKAHGFKFQGGLSVTGLFQAFFGPGKPILPLSCVYSILHSRTHLSPTPPEGGKEKDSTLWAKSCVSDYLNFIRECRESDYCDGGRWSAVGDPAYNGCK
Sbjct:    1 MSPSDPNDPRPICKPQVNQASYYSEYYKAHGFKFQGGLSVTGLFQAFFGPGKPILPLSCVYSILHSRTHLSPTPPEGGKEKDSTLWAKSCVSDYLNFIRECRESDYCDGGRWSAVGDPAYNGCK 124
[Close]
BLAST of EWM24373.1 vs. NCBI_GenBank
Match: gi|553191766|ref|XP_005855449.1| (hypothetical protein NGA_0096801 [Nannochloropsis gaditana CCMP526] >gi|422293608|gb|EKU20908.1| hypothetical protein NGA_0096801 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 200.29 bits (508), Expect = 5.494e-63
Identity = 99/124 (79.84%), Postives = 99/124 (79.84%), Query Frame = 0 
Query:    1 MSPSDPNDPRPICKPQVNQASYYSEYYKAHGFKFQGGLSVTGLFQAFFGPGKPILPLSCVYSILHSRTHLSPTPPEGGKEKDSTLWAKSCVSDYLNFIRECRESDYCDGGRWSAVGDPAYNGCK 124
            MSPSDPNDPRPICKPQVNQASYYSEYYKAHGFKFQGGLSVTGLFQAFFGP                         EGGKEKDSTLWAKSCVSDYLNFIRECRESDYCDGGRWSAVGDPAYNGCK
Sbjct:  127 MSPSDPNDPRPICKPQVNQASYYSEYYKAHGFKFQGGLSVTGLFQAFFGP-------------------------EGGKEKDSTLWAKSCVSDYLNFIRECRESDYCDGGRWSAVGDPAYNGCK 225
The following BLAST results are available for this feature:
BLAST of EWM24373.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105770|gb|EWM24373.1|9.929e-88100.00hypothetical protein Naga_100246g2 [Nannochloropsi... [more]
gi|553191766|ref|XP_005855449.1|5.494e-6379.84hypothetical protein NGA_0096801 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6323rna6323Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications