rna6308, rna6308 (mRNA) Nannochloropsis gaditana

Overview
Namerna6308
Unique Namerna6308
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1611
Alignment locationCM002468.1:215954..217709 -

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Properties
Property NameValue
Productankyrin repeat protein
Orig transcript idgnl|cribi|Naga_100313g5.7268.mrna
Orig protein idgnl|cribi|Naga_100313g5.7268
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:215954..217709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100313g5gene6099Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6308rna6308-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24378.1cds6293Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6308 ID=rna6308|Name=rna6308|organism=Nannochloropsis gaditana|type=mRNA|length=1611bp
ATGGTGCAGCCAATCCGAGACACGATAAAAAAGCGGGGCAGTGTTAAGGT
TCTGGAGCGAGCGGCGCTGGGAGTGGATGGGGTGGGACGGATTTGCTATT
TCAAGGCGGATGAAGAAGAGAAGGACGAAGAGGAGGGAAACGAGGAGGAC
GCGACACCCAAACGGGTAGAAGCACAAGGGGAAGAGGCCAGATCCGCGGC
CCTTGCATCATCCCATCTAGTCTCCTGCCAGCCTCCCCCTCCTTCCCTTC
GCATTGTCACCCTCCCTCCCTCCCACTTCCTCCTCCCCGGCCTTGTCGAC
ACCCACCTCCACGCCCCTCAATTTGGCTACACGGGCACCGCCACCCATTT
GCCGTTGCTGGAATGGCTGAACCGGTACACTTTTCCCTCCGAGGCTCGGC
TCGCCAGCGATTTGTCCTACGCCCAGTCCCTCTACCGCTCCCTCCTTGAC
ACGGTGGTAGGGCAGGGTACCACCACGGCCCTCTACTTCGCCAGCAAGGA
CCTGGCTCCCACCAAGCTACTGGTCGACCTGATCCACGCCAAGGGGCAGC
GCGGTTTCGTAGGGAAGGTGAACATGGACAGGCATGCGCCCGAGGACTAC
TGTGAGGCGTCCGCCTCCGCCTCCTTGGCAGCGACGGAGGCGTTCCTCGA
CTACGTGCTGGACGTGGTGGCTTCCCCGTTGGTCCGCCCGGTCTTGACCC
CACGCTTCCTCCCCACCTGCTCCGACGCCTTACTCCAAGGGCTGGGTGCC
CTGGCGCGCAAATATGCAGGAAGGGAAGGAGGGCGAGAAGGAGGGCGGGG
TGGGGCGACACCCGGTTTACACATCCAGTCCCACATCAGCGAGAGCGCGG
ACCAGGTGGCTTTCAACCATCGTCTGGCCGAGCACCACCAAGGAGAGTCT
CGGGACCTTCCTGTCTTCGAACGGTGCGGGCTCCTCACCCCGCTGACCGT
CTTGGCCCATGGTATCCACCTCTCCCCCTCCGAGCTCGCCCTCCTGGCGC
GTAGGGGGGCCGGCCTCGCCCATTGCCCCCTCTCGAATTTCTTCTTCGGA
CACGGAGTACTCCCCGTGCGGAAGGTTCTAGAAGCCGGGGTCAAGGTCGG
TTTGGGCACTGACGTGGCAGGAGGGTACTCGAGCTCCATGCTGTCGGCGA
TCCGGTCCTGCGTGTTGGCCTCGCGGGCCCTGGAGGACGGGGTGGAGGAA
TGGCGGCATGGGGAGGAGGAAGGGGATAGGGAGGGAAAGAAGGAGGGAGG
GAAGCAGGGAGGAGAGCAATGGTGCAAAGAAGGGAGGGAGGGAATGAGGA
TCGATTGGAAGGAAGCCCTGTGGCTTGCGACGATGGGGGGGGCGGAATGT
CTGGGCTTGGAGGAGGAGGTGGGTTCATGGGCGGTGGGGAAAGCCTTCGA
CGCAGTCCGGGTAGATGTGAAGAAGGGAGGGGCAGTGGTGGTGCTGGAGG
GTGGGGGAGACAGTGCAGAGGACCTGGTGGAAAAGTGGGTGAATAACGGG
GACGACAGGCATGTCCTTGAGGTGTATGTGGTAGGGAGGGAGATCAAGCA
CGGGGGGTGGGAGGGAGGGGGCGGCGGGGCGGGGAAGGGGCGACCAAAGA
CACAGAAATAA
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protein sequence of rna6308

>rna6308-protein ID=rna6308-protein|Name=rna6308|organism=Nannochloropsis gaditana|type=polypeptide|length=292bp
MAANMPFSIVAVEEEVDLVMAEFVTAARQECLIAATRRGDVSTVAELLEQ
DNSLLYHTIHRKTSLLVVAVKHGHHALCEFLIRKGVEVNKICNAGLTAVH
HAAMLPDSQAIPLIHLLVKHGAHLNPPPHTRRYGWQSPLHLAVEKKRLGA
VRELVAMGSSIFGRNGRQQTPLALCGQFSAVAKAMDEGFRLQRLRSLIRR
LFLLSGTLPLMPPPGETKDRDLASEGRKVPLVQRYLTFCLERSTFCARRG
SYRQSGRRTEAPASSSADNFPVESIAADFTSSGATYLKERQA
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mRNA from alignment at CM002468.1:215954..217709-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6308 ID=rna6308|Name=rna6308|organism=Nannochloropsis gaditana|type=mRNA|length=1756bp|location=Sequence derived from alignment at CM002468.1:215954..217709- (Nannochloropsis gaditana)
ATGGCTGCAAATATGCCATTCTCGATTGTGGCCGTTGAGGAAGAAGTGGA
CTTGGTCATGGCTGAATTCGTGACCGCAGCACGTCAAGAGTGTTTGATTG
CCGCCACGCGCAGAGGAGACGTCAGCACCGTTGCCGAACTTCTGGAACAA
GACAATTCCCTGCTTTATCACACGATACATCGGAAAACTAGCCTCCTGGT
AGTCGCGGTGAAACACGGACATCATGCTCTGTGTGAATTTCTGATACGAA
AGGGGGTAGAGGTGAACAAAATTTGCAACGCAGGCCTCACAGCGGTCCAT
CATGCGGCCATGCTCCCGGATTCTCAAGCTATCCCTCTCATTCACCTGCT
TGTGAAACACGGCGCTCACTTGAATCCTCCGCCTCACACACGCCGTTATG
GTTGGCAGTCGCCTCTACACCTAGCTGTGGAGAAAAAGCGGCTCGGCGCG
GTGAGGGAACTGGTGGCGATGGGGAGTAGTATTTTCGGACGTAACGGACG
TCAGCAGACTCCTCTCGCACTATGCGGTCAATTTTCAGCGGTTGCCAAAG
CAATGGACGAGGGTTTCCGACTACAAAGGCTCCGGTCTTTGATACGGAGA
TTGTTCCTCTTGAGTGGAACCTTACCTCTGATGCCCCCACCAGGGGAAAC
GAAAGACAGGGACCTCGCATCTGTGTCTCATGGGAAACGAGGAAGACAAA
GAGAGGGAGAAAGTGTGTTGGACGGTGGTGTGAGAGGAGAAGCGTTGAAA
GATGAGAGGAGGAAAGATGGCGCGGACGAAAGGGGACCCACCGTAGGGGA
AAAGACGGTGATCCTCGTAAACGGAAAGCAAAAAGGCAAGCCGGACAGGG
GGAAAAGCTGGGGAAAAATGAATGCCATCGAACGACGATATCGCATGGGG
AAGGGATCTCCTCTCTTGACATTCAACTGCCGCGAGATTGGGAAAGAAGA
GCTGGGAAGAGGCGTGGAAGGAGAAGATGATGGAGGGGGGGAAGGAGGAG
GGGATGGAGGGGGGGAAGCAGCGGGAGGTGTCGAAAGAGGACAAGGTCTG
CAAAGGGAGGACAAAGAGAACGAGAAGAGAGCTGGTTGCGGGAGGGGCGG
GAAAGCCAAGAAATGCGAGGGAAAGGGAGCGCAAGGAGGAGGGAGAAAGC
AGAAGTCTACCCTCAGTAGAAAGAAGCTGGAAGAGAGGCGCACTGCCCGT
TTGATGAAGACTGTCTTTGAAGAGCTACCTTTTGACTTGCGCTCTACTAT
AGTAAAATTTGTGTGATGAGGAGCGAGGGACGGGACGAGGAGTTGAAAGA
GGGCGAGGAGGCGGGGGTGGTGGAGGAGGAAGAAAAGGAGGAGGAATGGC
AGGCGACGCCATGTATGTGTTGGCATGGCTCTCGACCTTCCTTCCGACTG
CCTGTGTCGGACGCGAGCAAGGCTGACCCCCTTTCCCCATGTCCTCCCTC
CACCCTCCTCATTCCTCCCTCCCCGCCCAGGTACCAGGGCGAACAAGCGC
GGCGAGGGGCGTGGCGTTATTTATTCCCGACGAGCCACGTCCATCATAGG
AGGGACGGAAAGTGCCACTGGTGCAGCGATACTTGACCTTCTGCTTAGAA
AGAAGCACTTTTTGTGCAAGGAGAGGGTCCTACCGGCAGAGCGGGCGAAG
GACCGAGGCCCCTGCTTCCTCATCCGCAGACAATTTCCCTGTTGAAAGTA
TCGCAGCAGATTTCACCAGTAGCGGGGCAACATATCTAAAAGAAAGGCAA
GCCTGA
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Coding sequence (CDS) from alignment at CM002468.1:215954..217709-

>rna6308 ID=rna6308|Name=rna6308|organism=Nannochloropsis gaditana|type=CDS|length=1758bp|location=Sequence derived from alignment at CM002468.1:215954..217709- (Nannochloropsis gaditana)
GAGGGACGGAAAGTGCCACTGGTGCAGCGATACTTGACCTTCTGCTTAGA
AAGAAGCACTTTTTGTGCAAGGAGAGGGTCCTACCGGCAGAGCGGGCGAA
GGACCGAGGCCCCTGCTTCCTCATCCGCAGACAATTTCCCTGTTGAAAGT
ATCGCAGCAGATTTCACCAGTAGCGGGGCAACATATCTAAAAGAAAGGCA
AGCCTGAATGGCTGCAAATATGCCATTCTCGATTGTGGCCGTTGAGGAAG
AAGTGGACTTGGTCATGGCTGAATTCGTGACCGCAGCACGTCAAGAGTGT
TTGATTGCCGCCACGCGCAGAGGAGACGTCAGCACCGTTGCCGAACTTCT
GGAACAAGACAATTCCCTGCTTTATCACACGATACATCGGAAAACTAGCC
TCCTGGTAGTCGCGGTGAAACACGGACATCATGCTCTGTGTGAATTTCTG
ATACGAAAGGGGGTAGAGGTGAACAAAATTTGCAACGCAGGCCTCACAGC
GGTCCATCATGCGGCCATGCTCCCGGATTCTCAAGCTATCCCTCTCATTC
ACCTGCTTGTGAAACACGGCGCTCACTTGAATCCTCCGCCTCACACACGC
CGTTATGGTTGGCAGTCGCCTCTACACCTAGCTGTGGAGAAAAAGCGGCT
CGGCGCGGTGAGGGAACTGGTGGCGATGGGGAGTAGTATTTTCGGACGTA
ACGGACGTCAGCAGACTCCTCTCGCACTATGCGGTCAATTTTCAGCGGTT
GCCAAAGCAATGGACGAGGGTTTCCGACTACAAAGGCTCCGGTCTTTGAT
ACGGAGATTGTTCCTCTTGAGTGGAACCTTACCTCTGATGCCCCCACCAG
GGGAAACGAAAGACAGGGACCTCGCATCTGAGGGACGGAAAGTGCCACTG
GTGCAGCGATACTTGACCTTCTGCTTAGAAAGAAGCACTTTTTGTGCAAG
GAGAGGGTCCTACCGGCAGAGCGGGCGAAGGACCGAGGCCCCTGCTTCCT
CATCCGCAGACAATTTCCCTGTTGAAAGTATCGCAGCAGATTTCACCAGT
AGCGGGGCAACATATCTAAAAGAAAGGCAAGCCTGAATGGCTGCAAATAT
GCCATTCTCGATTGTGGCCGTTGAGGAAGAAGTGGACTTGGTCATGGCTG
AATTCGTGACCGCAGCACGTCAAGAGTGTTTGATTGCCGCCACGCGCAGA
GGAGACGTCAGCACCGTTGCCGAACTTCTGGAACAAGACAATTCCCTGCT
TTATCACACGATACATCGGAAAACTAGCCTCCTGGTAGTCGCGGTGAAAC
ACGGACATCATGCTCTGTGTGAATTTCTGATACGAAAGGGGGTAGAGGTG
AACAAAATTTGCAACGCAGGCCTCACAGCGGTCCATCATGCGGCCATGCT
CCCGGATTCTCAAGCTATCCCTCTCATTCACCTGCTTGTGAAACACGGCG
CTCACTTGAATCCTCCGCCTCACACACGCCGTTATGGTTGGCAGTCGCCT
CTACACCTAGCTGTGGAGAAAAAGCGGCTCGGCGCGGTGAGGGAACTGGT
GGCGATGGGGAGTAGTATTTTCGGACGTAACGGACGTCAGCAGACTCCTC
TCGCACTATGCGGTCAATTTTCAGCGGTTGCCAAAGCAATGGACGAGGGT
TTCCGACTACAAAGGCTCCGGTCTTTGATACGGAGATTGTTCCTCTTGAG
TGGAACCTTACCTCTGATGCCCCCACCAGGGGAAACGAAAGACAGGGACC
TCGCATCT
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Synonyms
Publications